EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000047281 (Gene tree)
Gene ID: 55948
Gene Symbol: Sfn
Alias: 14-3-3 sigma|Er|MME1|Ywhas
Full Name: stratifin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 1613
Position: chr4: 133600556-133602168
Accession: 1891831
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000057311	-	1613	-	ENSMUSP00000050374	248 (aa)	-	O70456

Gene Model

Click here to download ENSMUSG00000047281's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04110	Cell cycle	KEGG
mmu04115	p53 signaling pathway	KEGG
mmu04960	Aldosterone-regulated sodium reabsorption	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000047281's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047281	Sfn	94	68.670	WBGene00001502	ftt-2	96	67.188	Caenorhabditis_elegans
ENSMUSG00000047281	Sfn	99	65.992	FBgn0004907	14-3-3zeta	94	67.521	Drosophila_melanogaster
ENSMUSG00000047281	Sfn	98	72.314	ENSG00000134308	YWHAQ	95	72.650	Homo_sapiens
ENSMUSG00000047281	Sfn	97	71.545	ENSG00000164924	YWHAZ	100	76.471	Homo_sapiens
ENSMUSG00000047281	Sfn	96	68.201	ENSG00000166913	YWHAB	93	72.464	Homo_sapiens
ENSMUSG00000047281	Sfn	98	71.901	ENSMUSG00000076432	Ywhaq	95	72.222	Mus_musculus
ENSMUSG00000047281	Sfn	97	71.138	ENSMUSG00000022285	Ywhaz	100	73.077	Mus_musculus
ENSMUSG00000047281	Sfn	96	68.201	ENSMUSG00000018326	Ywhab	94	68.376	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	10767298.	IDA	Process
GO:0001836	release of cytochrome c from mitochondria	-	ISO	Process
GO:0003334	keratinocyte development	24075906.	IGI	Process
GO:0005515	protein binding	16710422.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005634	nucleus	16710422.	IDA	Component
GO:0005737	cytoplasm	16710422.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	-	ISO	Process
GO:0010482	regulation of epidermal cell division	24075906.	IMP	Process
GO:0010839	negative regulation of keratinocyte proliferation	17041603.24075906.	IGI	Process
GO:0019901	protein kinase binding	10767298.	IDA	Function
GO:0019904	protein domain specific binding	-	IEA	Function
GO:0030216	keratinocyte differentiation	16239341.	IMP	Process
GO:0030307	positive regulation of cell growth	16710422.	IDA	Process
GO:0031424	keratinization	6174530.	IMP	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0043154	negative regulation of cysteine-type endopeptidase activity involved in apoptotic process	-	ISO	Process
GO:0043588	skin development	17041603.	IGI	Process
GO:0043588	skin development	16239341.	IMP	Process
GO:0045606	positive regulation of epidermal cell differentiation	24075906.	IMP	Process
GO:0046827	positive regulation of protein export from nucleus	17938205.	IDA	Process
GO:0051219	phosphoprotein binding	17938205.	IPI	Function
GO:0051726	regulation of cell cycle	10767298.	IDA	Process
GO:0061436	establishment of skin barrier	24075906.	IMP	Process