EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000047454 (Gene tree)
Gene ID: 268566
Gene Symbol: Gphn
Alias: 5730552E08Rik|geph
Full Name: gephyrin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 458394
Position: chr12: 78226379-78684772
Accession: 109602
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000219629	-	484	-	-	- (aa)	-	-
ENSMUST00000110388	-	3300	XM_006515900	ENSMUSP00000106018	772 (aa)	XP_006515963	A0JNY3
ENSMUST00000052472	-	3570	XM_006515899	ENSMUSP00000054064	769 (aa)	XP_006515962	Q8BUV3

Gene Model

Click here to download ENSMUSG00000047454's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00790	Folate biosynthesis	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04727	GABAergic synapse	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000047454's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047454	Gphn	100	98.446	ENSG00000171723	GPHN	100	98.446	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0005102	signaling receptor binding	-	ISO	Function
GO:0005515	protein binding	17347650.21829170.27609886.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0006777	Mo-molybdopterin cofactor biosynthetic process	21873635.	IBA	Process
GO:0006777	Mo-molybdopterin cofactor biosynthetic process	9812897.	IMP	Process
GO:0006777	Mo-molybdopterin cofactor biosynthetic process	-	ISO	Process
GO:0007529	establishment of synaptic specificity at neuromuscular junction	21873635.	IBA	Process
GO:0007529	establishment of synaptic specificity at neuromuscular junction	10531433.	IMP	Process
GO:0008092	cytoskeletal protein binding	10531433.	TAS	Function
GO:0008152	metabolic process	-	IEA	Process
GO:0008940	nitrate reductase activity	-	ISO	Function
GO:0010038	response to metal ion	-	ISO	Process
GO:0014069	postsynaptic density	27609886.	IDA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0018315	molybdenum incorporation into molybdenum-molybdopterin complex	21873635.	IBA	Process
GO:0019897	extrinsic component of plasma membrane	9089277.	TAS	Component
GO:0030054	cell junction	-	IEA	Component
GO:0030425	dendrite	21873635.	IBA	Component
GO:0030425	dendrite	24554721.	IDA	Component
GO:0030425	dendrite	-	ISO	Component
GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	-	ISO	Component
GO:0032324	molybdopterin cofactor biosynthetic process	21873635.	IBA	Process
GO:0032324	molybdopterin cofactor biosynthetic process	-	ISO	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0042995	cell projection	-	IEA	Component
GO:0043025	neuronal cell body	24554721.	IDA	Component
GO:0043546	molybdopterin cofactor binding	-	ISO	Function
GO:0045184	establishment of protein localization	-	ISO	Process
GO:0045202	synapse	-	ISO	Component
GO:0045211	postsynaptic membrane	21873635.	IBA	Component
GO:0045211	postsynaptic membrane	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0060077	inhibitory synapse	9812897.24613359.	IDA	Component
GO:0060077	inhibitory synapse	21119615.	ISO	Component
GO:0060090	molecular adaptor activity	-	ISO	Function
GO:0061598	molybdopterin adenylyltransferase activity	21873635.	IBA	Function
GO:0061598	molybdopterin adenylyltransferase activity	-	ISO	Function
GO:0061599	molybdopterin molybdotransferase activity	21873635.	IBA	Function
GO:0061599	molybdopterin molybdotransferase activity	-	ISO	Function
GO:0072579	glycine receptor clustering	21873635.	IBA	Process
GO:0072579	glycine receptor clustering	9812897.	IMP	Process
GO:0097112	gamma-aminobutyric acid receptor clustering	21873635.	IBA	Process
GO:0097112	gamma-aminobutyric acid receptor clustering	19723286.	IGI	Process
GO:0097112	gamma-aminobutyric acid receptor clustering	-	ISO	Process
GO:0098690	glycinergic synapse	-	ISO	Component
GO:0098794	postsynapse	24554721.	IDA	Component
GO:0098970	postsynaptic neurotransmitter receptor diffusion trapping	21873635.	IBA	Process
GO:0098970	postsynaptic neurotransmitter receptor diffusion trapping	24894704.	IEP	Process
GO:0098982	GABA-ergic synapse	10531433.19955355.	IDA	Component
GO:0098982	GABA-ergic synapse	10531433.	IMP	Component
GO:0099091	postsynaptic specialization, intracellular component	19955355.	IDA	Component
GO:0099091	postsynaptic specialization, intracellular component	-	ISO	Component
GO:0099572	postsynaptic specialization	21873635.	IBA	Component
GO:0099572	postsynaptic specialization	-	ISO	Component
GO:0099645	neurotransmitter receptor localization to postsynaptic specialization membrane	10531433.	IDA	Process
GO:0099645	neurotransmitter receptor localization to postsynaptic specialization membrane	10531433.	IMP	Process
GO:0099645	neurotransmitter receptor localization to postsynaptic specialization membrane	-	ISO	Process