EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000092096	-	4726	XM_006526134	ENSMUSP00000089728	493 (aa)	XP_006526197	Q9JMA1
ENSMUST00000133594	-	477	-	-	- (aa)	-	-
ENSMUST00000116669	-	2019	XM_017317959	ENSMUSP00000112368	458 (aa)	-	E9PYI8
ENSMUST00000154088	-	989	-	-	- (aa)	-	-
ENSMUST00000150321	-	639	-	-	- (aa)	-	-
ENSMUST00000234165	-	664	-	-	- (aa)	-	-
ENSMUST00000234243	-	612	-	-	- (aa)	-	-
ENSMUST00000128334	-	1346	-	-	- (aa)	-	-
ENSMUST00000145929	-	656	-	-	- (aa)	-	-
ENSMUST00000142013	-	1484	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047879	Usp14	98	41.750	WBGene00006856	usp-14	94	41.750	Caenorhabditis_elegans
ENSMUSG00000047879	Usp14	100	96.950	ENSG00000101557	USP14	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000502	proteasome complex	-	IEA	Component
GO:0002376	immune system process	-	IEA	Process
GO:0004843	thiol-dependent ubiquitin-specific protease activity	-	ISO	Function
GO:0004866	endopeptidase inhibitor activity	-	ISO	Function
GO:0005515	protein binding	19135427.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0006508	proteolysis	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	IEA	Process
GO:0007268	chemical synaptic transmission	12368914.	IMP	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0009986	cell surface	-	ISO	Component
GO:0016020	membrane	-	IEA	Component
GO:0016579	protein deubiquitination	-	ISO	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031410	cytoplasmic vesicle	-	ISO	Component
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	-	ISO	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0045202	synapse	12368914.	IDA	Component
GO:0050920	regulation of chemotaxis	-	ISO	Process
GO:0061136	regulation of proteasomal protein catabolic process	-	ISO	Process
GO:0070628	proteasome binding	-	ISO	Function
GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process	-	ISO	Process