EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000047888 (Gene tree)
Gene ID: 213988
Gene Symbol: Tnrc6b
Alias: 2700090M07Rik|A730065C02Rik|D230019K20Rik
Full Name: trinucleotide repeat containing 6b
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 229773 bases
Position: chr15:80711313-80941085
Accession: 2443730
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000064336	Ago_hook	PF10427.9	2.7e-20	1	1
ENSMUSP00000154573	Ago_hook	PF10427.9	5.2e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000226857	-	3240	-	-	- (aa)	-	-
ENSMUST00000226461	-	2053	-	-	- (aa)	-	-
ENSMUST00000227546	-	620	-	-	- (aa)	-	-
ENSMUST00000227449	-	183	-	ENSMUSP00000153748	61 (aa)	-	A0A2I3BPE5
ENSMUST00000228124	-	3407	-	ENSMUSP00000154573	958 (aa)	-	A0A2I3BRG1
ENSMUST00000226442	-	3302	-	-	- (aa)	-	-
ENSMUST00000067689	-	17332	-	ENSMUSP00000064336	1810 (aa)	-	Q8BKI2
ENSMUST00000228525	-	1774	-	-	- (aa)	-	-
ENSMUST00000228320	-	376	-	-	- (aa)	-	-
ENSMUST00000228071	-	5215	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000047888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000047888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000047888	Tnrc6b	99	41.712	ENSMUSG00000052707	Tnrc6a	98	38.260
ENSMUSG00000047888	Tnrc6b	99	39.456	ENSMUSG00000025571	Tnrc6c	99	35.191

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000047888	Tnrc6b	99	95.851	ENSG00000100354	TNRC6B	100	96.226	Homo_sapiens
ENSMUSG00000047888	Tnrc6b	99	90.173	ENSAMEG00000011025	TNRC6B	100	89.757	Ailuropoda_melanoleuca
ENSMUSG00000047888	Tnrc6b	99	85.685	ENSAPLG00000009347	TNRC6B	100	84.541	Anas_platyrhynchos
ENSMUSG00000047888	Tnrc6b	99	77.625	ENSACAG00000007281	TNRC6B	99	73.341	Anolis_carolinensis
ENSMUSG00000047888	Tnrc6b	99	94.606	ENSANAG00000035042	TNRC6B	100	95.873	Aotus_nancymaae
ENSMUSG00000047888	Tnrc6b	87	47.747	ENSAMXG00000008707	tnrc6b	97	44.819	Astyanax_mexicanus
ENSMUSG00000047888	Tnrc6b	99	93.472	ENSBTAG00000021076	TNRC6B	99	93.845	Bos_taurus
ENSMUSG00000047888	Tnrc6b	96	94.836	ENSCJAG00000002732	TNRC6B	99	97.465	Callithrix_jacchus
ENSMUSG00000047888	Tnrc6b	99	94.404	ENSCAFG00000001255	TNRC6B	99	91.813	Canis_familiaris
ENSMUSG00000047888	Tnrc6b	99	94.611	ENSCAFG00020002189	TNRC6B	99	94.596	Canis_lupus_dingo
ENSMUSG00000047888	Tnrc6b	99	93.875	ENSCHIG00000003491	TNRC6B	100	94.042	Capra_hircus
ENSMUSG00000047888	Tnrc6b	99	93.983	ENSTSYG00000011836	TNRC6B	100	94.340	Carlito_syrichta
ENSMUSG00000047888	Tnrc6b	100	95.317	ENSCPOG00000005705	TNRC6B	100	95.372	Cavia_porcellus
ENSMUSG00000047888	Tnrc6b	99	92.347	ENSCCAG00000019912	TNRC6B	100	93.042	Cebus_capucinus
ENSMUSG00000047888	Tnrc6b	96	94.954	ENSCATG00000029291	TNRC6B	100	94.582	Cercocebus_atys
ENSMUSG00000047888	Tnrc6b	100	95.477	ENSCLAG00000016942	TNRC6B	100	95.477	Chinchilla_lanigera
ENSMUSG00000047888	Tnrc6b	97	91.191	ENSCSAG00000006021	TNRC6B	99	91.135	Chlorocebus_sabaeus
ENSMUSG00000047888	Tnrc6b	55	95.971	ENSCHOG00000010004	-	61	95.971	Choloepus_hoffmanni
ENSMUSG00000047888	Tnrc6b	89	84.308	ENSCPBG00000022932	TNRC6B	99	84.606	Chrysemys_picta_bellii
ENSMUSG00000047888	Tnrc6b	99	94.404	ENSCANG00000030776	TNRC6B	100	94.935	Colobus_angolensis_palliatus
ENSMUSG00000047888	Tnrc6b	96	97.421	ENSCGRG00001020166	Tnrc6b	99	97.421	Cricetulus_griseus_chok1gshd
ENSMUSG00000047888	Tnrc6b	100	97.461	ENSCGRG00000016696	Tnrc6b	99	97.465	Cricetulus_griseus_crigri
ENSMUSG00000047888	Tnrc6b	100	94.169	ENSDNOG00000012744	TNRC6B	100	94.321	Dasypus_novemcinctus
ENSMUSG00000047888	Tnrc6b	100	95.698	ENSDORG00000003386	Tnrc6b	100	95.367	Dipodomys_ordii
ENSMUSG00000047888	Tnrc6b	99	81.497	ENSETEG00000006570	TNRC6B	99	84.002	Echinops_telfairi
ENSMUSG00000047888	Tnrc6b	99	95.087	ENSEASG00005005306	TNRC6B	99	94.872	Equus_asinus_asinus
ENSMUSG00000047888	Tnrc6b	100	95.212	ENSECAG00000009759	TNRC6B	99	97.000	Equus_caballus
ENSMUSG00000047888	Tnrc6b	63	95.676	ENSEEUG00000008690	-	59	95.238	Erinaceus_europaeus
ENSMUSG00000047888	Tnrc6b	56	64.238	ENSELUG00000019468	-	73	62.579	Esox_lucius
ENSMUSG00000047888	Tnrc6b	100	94.618	ENSFCAG00000004791	TNRC6B	100	94.454	Felis_catus
ENSMUSG00000047888	Tnrc6b	99	81.729	ENSFALG00000012195	TNRC6B	100	87.390	Ficedula_albicollis
ENSMUSG00000047888	Tnrc6b	100	96.026	ENSFDAG00000021368	TNRC6B	100	96.026	Fukomys_damarensis
ENSMUSG00000047888	Tnrc6b	97	88.249	ENSGALG00000012050	TNRC6B	97	88.192	Gallus_gallus
ENSMUSG00000047888	Tnrc6b	97	86.873	ENSGAGG00000025188	TNRC6B	98	86.930	Gopherus_agassizii
ENSMUSG00000047888	Tnrc6b	99	95.643	ENSGGOG00000008444	TNRC6B	100	95.991	Gorilla_gorilla
ENSMUSG00000047888	Tnrc6b	100	95.102	ENSHGLG00000009306	TNRC6B	100	94.827	Heterocephalus_glaber_female
ENSMUSG00000047888	Tnrc6b	100	95.088	ENSHGLG00100018108	TNRC6B	100	94.923	Heterocephalus_glaber_male
ENSMUSG00000047888	Tnrc6b	92	61.728	ENSIPUG00000001515	tnrc6b	80	46.985	Ictalurus_punctatus
ENSMUSG00000047888	Tnrc6b	100	95.918	ENSSTOG00000008927	TNRC6B	100	95.918	Ictidomys_tridecemlineatus
ENSMUSG00000047888	Tnrc6b	100	95.580	ENSJJAG00000015779	Tnrc6b	100	95.359	Jaculus_jaculus
ENSMUSG00000047888	Tnrc6b	98	61.787	ENSLACG00000000628	-	99	62.369	Latimeria_chalumnae
ENSMUSG00000047888	Tnrc6b	99	88.944	ENSLAFG00000014473	TNRC6B	99	94.259	Loxodonta_africana
ENSMUSG00000047888	Tnrc6b	96	95.230	ENSMFAG00000003862	TNRC6B	100	94.700	Macaca_fascicularis
ENSMUSG00000047888	Tnrc6b	100	95.050	ENSMMUG00000021345	TNRC6B	100	95.760	Macaca_mulatta
ENSMUSG00000047888	Tnrc6b	99	94.508	ENSMNEG00000042745	TNRC6B	99	94.872	Macaca_nemestrina
ENSMUSG00000047888	Tnrc6b	99	95.440	ENSMLEG00000041780	TNRC6B	100	95.760	Mandrillus_leucophaeus
ENSMUSG00000047888	Tnrc6b	98	83.941	ENSMGAG00000012333	TNRC6B	99	83.434	Meleagris_gallopavo
ENSMUSG00000047888	Tnrc6b	100	96.576	ENSMAUG00000016123	Tnrc6b	100	96.576	Mesocricetus_auratus
ENSMUSG00000047888	Tnrc6b	99	96.162	ENSMICG00000014056	TNRC6B	100	95.283	Microcebus_murinus
ENSMUSG00000047888	Tnrc6b	97	98.500	ENSMOCG00000020334	Tnrc6b	100	98.500	Microtus_ochrogaster
ENSMUSG00000047888	Tnrc6b	71	54.569	ENSMMOG00000002799	si:dkey-217f16.6	59	69.388	Mola_mola
ENSMUSG00000047888	Tnrc6b	100	99.392	MGP_CAROLIEiJ_G0020043	Tnrc6b	100	99.392	Mus_caroli
ENSMUSG00000047888	Tnrc6b	100	99.006	MGP_PahariEiJ_G0020045	Tnrc6b	100	99.006	Mus_pahari
ENSMUSG00000047888	Tnrc6b	100	99.779	MGP_SPRETEiJ_G0020941	Tnrc6b	100	99.779	Mus_spretus
ENSMUSG00000047888	Tnrc6b	95	96.762	ENSMPUG00000016442	TNRC6B	99	83.610	Mustela_putorius_furo
ENSMUSG00000047888	Tnrc6b	97	89.753	ENSMLUG00000008765	TNRC6B	99	89.497	Myotis_lucifugus
ENSMUSG00000047888	Tnrc6b	100	95.815	ENSNGAG00000021294	Tnrc6b	100	95.815	Nannospalax_galili
ENSMUSG00000047888	Tnrc6b	99	82.402	ENSNLEG00000015311	TNRC6B	100	96.226	Nomascus_leucogenys
ENSMUSG00000047888	Tnrc6b	99	92.642	ENSOPRG00000012054	TNRC6B	88	90.870	Ochotona_princeps
ENSMUSG00000047888	Tnrc6b	100	95.976	ENSODEG00000013146	TNRC6B	100	95.865	Octodon_degus
ENSMUSG00000047888	Tnrc6b	87	46.948	ENSONIG00000019679	-	99	41.859	Oreochromis_niloticus
ENSMUSG00000047888	Tnrc6b	100	94.221	ENSOCUG00000016128	TNRC6B	100	94.056	Oryctolagus_cuniculus
ENSMUSG00000047888	Tnrc6b	97	90.591	ENSOGAG00000011096	TNRC6B	99	89.951	Otolemur_garnettii
ENSMUSG00000047888	Tnrc6b	100	93.812	ENSOARG00000017238	TNRC6B	100	93.593	Ovis_aries
ENSMUSG00000047888	Tnrc6b	99	95.747	ENSPPAG00000028514	TNRC6B	100	95.632	Pan_paniscus
ENSMUSG00000047888	Tnrc6b	99	94.600	ENSPPRG00000017741	TNRC6B	100	94.941	Panthera_pardus
ENSMUSG00000047888	Tnrc6b	99	88.266	ENSPTIG00000022064	TNRC6B	98	88.471	Panthera_tigris_altaica
ENSMUSG00000047888	Tnrc6b	99	95.643	ENSPTRG00000047826	TNRC6B	100	95.991	Pan_troglodytes
ENSMUSG00000047888	Tnrc6b	99	85.581	ENSPANG00000009271	TNRC6B	99	91.200	Papio_anubis
ENSMUSG00000047888	Tnrc6b	97	86.866	ENSPSIG00000005318	TNRC6B	99	86.979	Pelodiscus_sinensis
ENSMUSG00000047888	Tnrc6b	100	97.518	ENSPEMG00000011403	Tnrc6b	100	97.518	Peromyscus_maniculatus_bairdii
ENSMUSG00000047888	Tnrc6b	97	85.860	ENSPCIG00000020347	TNRC6B	99	85.974	Phascolarctos_cinereus
ENSMUSG00000047888	Tnrc6b	89	43.830	ENSPFOG00000006033	-	95	42.102	Poecilia_formosa
ENSMUSG00000047888	Tnrc6b	76	53.317	ENSPMEG00000006371	-	68	54.265	Poecilia_mexicana
ENSMUSG00000047888	Tnrc6b	99	95.851	ENSPPYG00000011849	TNRC6B	99	92.203	Pongo_abelii
ENSMUSG00000047888	Tnrc6b	84	85.025	ENSPCAG00000008739	TNRC6B	77	87.823	Procavia_capensis
ENSMUSG00000047888	Tnrc6b	99	96.162	ENSPCOG00000020790	TNRC6B	100	95.991	Propithecus_coquereli
ENSMUSG00000047888	Tnrc6b	93	94.032	ENSPVAG00000004975	TNRC6B	94	94.032	Pteropus_vampyrus
ENSMUSG00000047888	Tnrc6b	80	65.079	ENSPNAG00000011713	tnrc6b	78	44.860	Pygocentrus_nattereri
ENSMUSG00000047888	Tnrc6b	100	98.023	ENSRNOG00000024907	Tnrc6b	100	98.023	Rattus_norvegicus
ENSMUSG00000047888	Tnrc6b	99	94.802	ENSRBIG00000035576	TNRC6B	99	95.642	Rhinopithecus_bieti
ENSMUSG00000047888	Tnrc6b	99	94.595	ENSRROG00000031135	TNRC6B	100	95.642	Rhinopithecus_roxellana
ENSMUSG00000047888	Tnrc6b	99	94.606	ENSSBOG00000029743	TNRC6B	96	95.873	Saimiri_boliviensis_boliviensis
ENSMUSG00000047888	Tnrc6b	97	81.897	ENSSHAG00000009692	TNRC6B	99	80.782	Sarcophilus_harrisii
ENSMUSG00000047888	Tnrc6b	85	84.096	ENSSARG00000007971	-	70	84.746	Sorex_araneus
ENSMUSG00000047888	Tnrc6b	99	75.419	ENSSPUG00000010801	TNRC6B	100	81.543	Sphenodon_punctatus
ENSMUSG00000047888	Tnrc6b	100	94.331	ENSSSCG00000000078	TNRC6B	99	94.237	Sus_scrofa
ENSMUSG00000047888	Tnrc6b	88	86.219	ENSTGUG00000010138	-	99	82.438	Taeniopygia_guttata
ENSMUSG00000047888	Tnrc6b	99	90.560	ENSTTRG00000011465	TNRC6B	100	88.828	Tursiops_truncatus
ENSMUSG00000047888	Tnrc6b	99	94.398	ENSUAMG00000007174	TNRC6B	99	93.423	Ursus_americanus
ENSMUSG00000047888	Tnrc6b	97	94.470	ENSUMAG00000014336	TNRC6B	100	94.218	Ursus_maritimus
ENSMUSG00000047888	Tnrc6b	73	88.352	ENSVPAG00000001467	TNRC6B	75	88.105	Vicugna_pacos
ENSMUSG00000047888	Tnrc6b	100	94.664	ENSVVUG00000007064	TNRC6B	100	94.766	Vulpes_vulpes
ENSMUSG00000047888	Tnrc6b	78	49.369	ENSXCOG00000003042	-	82	41.903	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0031047	gene silencing by RNA	-	ISO	Process
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process