EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000048118 (Gene tree)
Gene ID: 238247
Gene Symbol: Arid4a
Alias: A630067N03Rik|Rbbp1
Full Name: AT rich interactive domain 4A (RBP1-like)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 82603 bases
Position: chr12:71015990-71098592
Accession: 2444354
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000121319	Tudor-knot	PF11717.8	5.8e-13	1	1
ENSMUSP00000035512	Tudor-knot	PF11717.8	1.2e-12	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135709	-	1887	XM_006515834	ENSMUSP00000121319	531 (aa)	XP_006515897	E9Q9V1
ENSMUST00000134718	-	1639	-	-	- (aa)	-	-
ENSMUST00000125125	-	1320	-	ENSMUSP00000121109	295 (aa)	-	Q8BY40
ENSMUST00000046305	-	4998	XM_011244105	ENSMUSP00000035512	1261 (aa)	XP_011242407	F8VPQ2

Gene Model

Click here to download ENSMUSG00000048118's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000048118's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000048118	Arid4a	100	85.432	ENSG00000032219	ARID4A	100	100.000	Homo_sapiens
ENSMUSG00000048118	Arid4a	99	83.685	ENSAMEG00000002532	ARID4A	99	83.685	Ailuropoda_melanoleuca
ENSMUSG00000048118	Arid4a	75	51.506	ENSACIG00000021943	-	63	55.144	Amphilophus_citrinellus
ENSMUSG00000048118	Arid4a	86	57.240	ENSATEG00000014386	arid4a	63	66.735	Anabas_testudineus
ENSMUSG00000048118	Arid4a	99	71.239	ENSAPLG00000006185	ARID4A	100	71.729	Anas_platyrhynchos
ENSMUSG00000048118	Arid4a	100	66.361	ENSACAG00000014637	ARID4A	99	66.081	Anolis_carolinensis
ENSMUSG00000048118	Arid4a	100	84.640	ENSANAG00000037559	ARID4A	100	84.640	Aotus_nancymaae
ENSMUSG00000048118	Arid4a	82	54.075	ENSACLG00000005837	arid4a	73	57.938	Astatotilapia_calliptera
ENSMUSG00000048118	Arid4a	71	68.542	ENSAMXG00000000379	arid4a	90	67.629	Astyanax_mexicanus
ENSMUSG00000048118	Arid4a	100	84.834	ENSBTAG00000018898	ARID4A	100	84.834	Bos_taurus
ENSMUSG00000048118	Arid4a	100	84.877	ENSCJAG00000018764	ARID4A	100	84.877	Callithrix_jacchus
ENSMUSG00000048118	Arid4a	100	85.432	ENSCAFG00000023936	ARID4A	100	85.432	Canis_familiaris
ENSMUSG00000048118	Arid4a	100	85.273	ENSCAFG00020008690	ARID4A	99	85.273	Canis_lupus_dingo
ENSMUSG00000048118	Arid4a	99	82.821	ENSCHIG00000021589	ARID4A	100	82.821	Capra_hircus
ENSMUSG00000048118	Arid4a	99	84.219	ENSTSYG00000013397	ARID4A	99	84.060	Carlito_syrichta
ENSMUSG00000048118	Arid4a	79	78.860	ENSCAPG00000008719	-	100	78.385	Cavia_aperea
ENSMUSG00000048118	Arid4a	94	71.743	ENSCPOG00000032725	-	98	71.343	Cavia_porcellus
ENSMUSG00000048118	Arid4a	99	80.228	ENSCCAG00000019639	ARID4A	98	81.893	Cebus_capucinus
ENSMUSG00000048118	Arid4a	100	85.511	ENSCATG00000041635	ARID4A	100	85.432	Cercocebus_atys
ENSMUSG00000048118	Arid4a	99	72.368	ENSCLAG00000003914	-	99	71.992	Chinchilla_lanigera
ENSMUSG00000048118	Arid4a	99	81.321	ENSCSAG00000014425	ARID4A	98	83.636	Chlorocebus_sabaeus
ENSMUSG00000048118	Arid4a	99	80.228	ENSCHOG00000003408	ARID4A	94	77.540	Choloepus_hoffmanni
ENSMUSG00000048118	Arid4a	100	73.460	ENSCPBG00000024815	ARID4A	100	73.776	Chrysemys_picta_bellii
ENSMUSG00000048118	Arid4a	100	85.115	ENSCANG00000034778	ARID4A	100	85.115	Colobus_angolensis_palliatus
ENSMUSG00000048118	Arid4a	100	88.510	ENSCGRG00001018168	Arid4a	100	88.431	Cricetulus_griseus_chok1gshd
ENSMUSG00000048118	Arid4a	100	85.122	ENSCGRG00000005293	Arid4a	96	87.891	Cricetulus_griseus_crigri
ENSMUSG00000048118	Arid4a	85	57.888	ENSCSEG00000011930	arid4a	58	65.306	Cynoglossus_semilaevis
ENSMUSG00000048118	Arid4a	100	83.518	ENSDNOG00000004090	ARID4A	100	83.281	Dasypus_novemcinctus
ENSMUSG00000048118	Arid4a	100	78.797	ENSDORG00000002170	Arid4a	100	78.718	Dipodomys_ordii
ENSMUSG00000048118	Arid4a	82	98.039	ENSETEG00000014494	ARID4A	92	81.671	Echinops_telfairi
ENSMUSG00000048118	Arid4a	100	85.194	ENSEASG00005016222	ARID4A	99	85.194	Equus_asinus_asinus
ENSMUSG00000048118	Arid4a	100	85.194	ENSECAG00000019256	ARID4A	100	85.194	Equus_caballus
ENSMUSG00000048118	Arid4a	100	74.051	ENSEEUG00000001510	ARID4A	100	74.051	Erinaceus_europaeus
ENSMUSG00000048118	Arid4a	71	66.872	ENSELUG00000003087	arid4a	69	67.300	Esox_lucius
ENSMUSG00000048118	Arid4a	100	84.798	ENSFCAG00000019223	ARID4A	100	84.798	Felis_catus
ENSMUSG00000048118	Arid4a	100	71.495	ENSFALG00000003561	ARID4A	100	71.651	Ficedula_albicollis
ENSMUSG00000048118	Arid4a	86	87.701	ENSFDAG00000005958	-	100	87.701	Fukomys_damarensis
ENSMUSG00000048118	Arid4a	70	69.431	ENSFHEG00000004741	arid4a	69	64.124	Fundulus_heteroclitus
ENSMUSG00000048118	Arid4a	100	72.512	ENSGALG00000012037	ARID4A	100	73.381	Gallus_gallus
ENSMUSG00000048118	Arid4a	100	72.907	ENSGAGG00000012085	ARID4A	100	73.223	Gopherus_agassizii
ENSMUSG00000048118	Arid4a	100	85.273	ENSGGOG00000027092	ARID4A	100	85.273	Gorilla_gorilla
ENSMUSG00000048118	Arid4a	99	76.504	ENSHGLG00000001903	-	99	76.128	Heterocephalus_glaber_female
ENSMUSG00000048118	Arid4a	99	75.564	ENSHGLG00100005885	-	99	75.188	Heterocephalus_glaber_male
ENSMUSG00000048118	Arid4a	100	85.827	ENSSTOG00000019680	ARID4A	100	85.827	Ictidomys_tridecemlineatus
ENSMUSG00000048118	Arid4a	95	89.305	ENSJJAG00000016742	Arid4a	100	89.305	Jaculus_jaculus
ENSMUSG00000048118	Arid4a	57	68.085	ENSKMAG00000018271	arid4a	57	64.170	Kryptolebias_marmoratus
ENSMUSG00000048118	Arid4a	71	51.151	ENSLBEG00000018330	arid4a	51	84.483	Labrus_bergylta
ENSMUSG00000048118	Arid4a	100	84.707	ENSLAFG00000008653	ARID4A	99	84.707	Loxodonta_africana
ENSMUSG00000048118	Arid4a	100	85.273	ENSMFAG00000037044	ARID4A	100	85.194	Macaca_fascicularis
ENSMUSG00000048118	Arid4a	100	85.352	ENSMMUG00000003514	ARID4A	100	85.273	Macaca_mulatta
ENSMUSG00000048118	Arid4a	100	85.352	ENSMNEG00000037476	ARID4A	100	85.273	Macaca_nemestrina
ENSMUSG00000048118	Arid4a	100	85.432	ENSMLEG00000043095	ARID4A	100	85.352	Mandrillus_leucophaeus
ENSMUSG00000048118	Arid4a	55	53.786	ENSMAMG00000006769	arid4a	59	55.336	Mastacembelus_armatus
ENSMUSG00000048118	Arid4a	82	54.075	ENSMZEG00005017186	arid4a	73	57.938	Maylandia_zebra
ENSMUSG00000048118	Arid4a	100	71.851	ENSMGAG00000013615	ARID4A	100	72.650	Meleagris_gallopavo
ENSMUSG00000048118	Arid4a	100	79.849	ENSMAUG00000016160	Arid4a	97	79.878	Mesocricetus_auratus
ENSMUSG00000048118	Arid4a	100	85.737	ENSMICG00000011761	ARID4A	100	85.737	Microcebus_murinus
ENSMUSG00000048118	Arid4a	100	87.163	ENSMOCG00000010098	Arid4a	100	86.926	Microtus_ochrogaster
ENSMUSG00000048118	Arid4a	100	74.903	ENSMODG00000007881	ARID4A	100	74.903	Monodelphis_domestica
ENSMUSG00000048118	Arid4a	100	98.493	MGP_CAROLIEiJ_G0017824	Arid4a	100	98.493	Mus_caroli
ENSMUSG00000048118	Arid4a	100	96.590	MGP_PahariEiJ_G0029580	Arid4a	100	96.590	Mus_pahari
ENSMUSG00000048118	Arid4a	100	99.207	MGP_SPRETEiJ_G0018669	Arid4a	100	99.207	Mus_spretus
ENSMUSG00000048118	Arid4a	100	85.352	ENSMPUG00000006137	ARID4A	100	85.352	Mustela_putorius_furo
ENSMUSG00000048118	Arid4a	99	83.775	ENSMLUG00000012354	ARID4A	99	83.775	Myotis_lucifugus
ENSMUSG00000048118	Arid4a	100	82.399	ENSNGAG00000015701	Arid4a	99	82.320	Nannospalax_galili
ENSMUSG00000048118	Arid4a	100	84.956	ENSNLEG00000013149	ARID4A	100	84.956	Nomascus_leucogenys
ENSMUSG00000048118	Arid4a	99	76.217	ENSOPRG00000002859	ARID4A	71	87.879	Ochotona_princeps
ENSMUSG00000048118	Arid4a	99	71.992	ENSODEG00000014309	-	99	72.180	Octodon_degus
ENSMUSG00000048118	Arid4a	99	65.414	ENSOANG00000011836	ARID4A	99	70.072	Ornithorhynchus_anatinus
ENSMUSG00000048118	Arid4a	100	83.056	ENSOCUG00000001052	ARID4A	100	83.056	Oryctolagus_cuniculus
ENSMUSG00000048118	Arid4a	66	67.548	ENSORLG00020001443	arid4a	71	84.483	Oryzias_latipes_hni
ENSMUSG00000048118	Arid4a	100	83.491	ENSOGAG00000000385	ARID4A	100	83.491	Otolemur_garnettii
ENSMUSG00000048118	Arid4a	100	84.094	ENSOARG00000021110	ARID4A	100	84.094	Ovis_aries
ENSMUSG00000048118	Arid4a	100	85.352	ENSPPAG00000042713	ARID4A	100	85.352	Pan_paniscus
ENSMUSG00000048118	Arid4a	100	84.719	ENSPPRG00000009142	ARID4A	100	84.719	Panthera_pardus
ENSMUSG00000048118	Arid4a	100	84.798	ENSPTIG00000007597	ARID4A	100	84.798	Panthera_tigris_altaica
ENSMUSG00000048118	Arid4a	100	85.352	ENSPTRG00000006393	ARID4A	100	85.352	Pan_troglodytes
ENSMUSG00000048118	Arid4a	100	85.511	ENSPANG00000022390	ARID4A	100	85.432	Papio_anubis
ENSMUSG00000048118	Arid4a	68	74.869	ENSPKIG00000015415	arid4a	82	74.869	Paramormyrops_kingsleyae
ENSMUSG00000048118	Arid4a	99	71.727	ENSPSIG00000014845	ARID4A	100	71.749	Pelodiscus_sinensis
ENSMUSG00000048118	Arid4a	100	87.639	ENSPEMG00000008231	Arid4a	100	87.797	Peromyscus_maniculatus_bairdii
ENSMUSG00000048118	Arid4a	98	69.982	ENSPCIG00000017482	ARID4A	98	72.727	Phascolarctos_cinereus
ENSMUSG00000048118	Arid4a	100	85.511	ENSPPYG00000005857	ARID4A	100	85.511	Pongo_abelii
ENSMUSG00000048118	Arid4a	89	90.909	ENSPCAG00000002099	ARID4A	89	90.909	Procavia_capensis
ENSMUSG00000048118	Arid4a	100	85.669	ENSPCOG00000013924	ARID4A	100	85.669	Propithecus_coquereli
ENSMUSG00000048118	Arid4a	100	84.244	ENSPVAG00000003866	ARID4A	100	84.244	Pteropus_vampyrus
ENSMUSG00000048118	Arid4a	82	54.075	ENSPNYG00000009221	arid4a	71	58.678	Pundamilia_nyererei
ENSMUSG00000048118	Arid4a	100	91.277	ENSRNOG00000026239	Arid4a	100	91.594	Rattus_norvegicus
ENSMUSG00000048118	Arid4a	100	84.968	ENSRBIG00000032944	ARID4A	99	84.968	Rhinopithecus_bieti
ENSMUSG00000048118	Arid4a	100	85.511	ENSRROG00000034002	ARID4A	100	85.511	Rhinopithecus_roxellana
ENSMUSG00000048118	Arid4a	100	84.640	ENSSBOG00000027453	ARID4A	100	84.640	Saimiri_boliviensis_boliviensis
ENSMUSG00000048118	Arid4a	99	75.930	ENSSHAG00000018032	ARID4A	99	75.930	Sarcophilus_harrisii
ENSMUSG00000048118	Arid4a	73	50.754	ENSSLDG00000022684	arid4a	86	68.047	Seriola_lalandi_dorsalis
ENSMUSG00000048118	Arid4a	99	83.043	ENSSARG00000006966	ARID4A	100	83.043	Sorex_araneus
ENSMUSG00000048118	Arid4a	99	70.801	ENSSPUG00000018360	ARID4A	100	70.824	Sphenodon_punctatus
ENSMUSG00000048118	Arid4a	100	83.411	ENSSSCG00000005073	ARID4A	100	83.411	Sus_scrofa
ENSMUSG00000048118	Arid4a	79	68.100	ENSTGUG00000013032	-	100	74.215	Taeniopygia_guttata
ENSMUSG00000048118	Arid4a	81	57.542	ENSTRUG00000008557	arid4a	62	65.546	Takifugu_rubripes
ENSMUSG00000048118	Arid4a	76	58.308	ENSTNIG00000002593	arid4a	61	63.750	Tetraodon_nigroviridis
ENSMUSG00000048118	Arid4a	99	76.038	ENSTBEG00000017302	ARID4A	82	81.014	Tupaia_belangeri
ENSMUSG00000048118	Arid4a	100	83.452	ENSUAMG00000007706	ARID4A	99	83.452	Ursus_americanus
ENSMUSG00000048118	Arid4a	100	84.243	ENSUMAG00000016791	ARID4A	99	84.243	Ursus_maritimus
ENSMUSG00000048118	Arid4a	93	84.626	ENSVPAG00000003645	ARID4A	93	84.626	Vicugna_pacos
ENSMUSG00000048118	Arid4a	100	85.273	ENSVVUG00000029542	ARID4A	100	85.273	Vulpes_vulpes
ENSMUSG00000048118	Arid4a	100	57.810	ENSXETG00000011968	arid4a	73	74.167	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0006349	regulation of gene expression by genetic imprinting	17043311.	IGI	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0007283	spermatogenesis	23487765.	IGI	Process
GO:0017053	transcriptional repressor complex	-	ISO	Component
GO:0030154	cell differentiation	-	IEA	Process
GO:0034773	histone H4-K20 trimethylation	17043311.	IGI	Process
GO:0034773	histone H4-K20 trimethylation	18728284.	IMP	Process
GO:0036124	histone H3-K9 trimethylation	17043311.	IGI	Process
GO:0036124	histone H3-K9 trimethylation	18728284.	IMP	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	23487765.	IGI	Process
GO:0048821	erythrocyte development	18728284.	IMP	Process
GO:0080182	histone H3-K4 trimethylation	18728284.	IMP	Process
GO:0097368	establishment of Sertoli cell barrier	23487765.	IGI	Process