EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000048647 (Gene tree)
Gene ID: 241624
Gene Symbol: Exd1
Alias: 4932702D22Rik|Exdl1
Full Name: exonuclease 3'-5' domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 31123 bases
Position: chr2:119516505-119547627
Accession: 3045306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000054980	DNA_pol_A_exo1	PF01612.20	2.4e-08	1	1
ENSMUSP00000126713	DNA_pol_A_exo1	PF01612.20	2.4e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000133668	-	537	-	ENSMUSP00000116082	98 (aa)	-	A2AQ12
ENSMUST00000060009	-	6042	XM_017318165	ENSMUSP00000054980	570 (aa)	XP_017173654	Q8CDF7
ENSMUST00000171024	-	5290	XM_006499491	ENSMUSP00000126713	570 (aa)	XP_006499554	Q8CDF7

Gene Model

Click here to download ENSMUSG00000048647's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000048647's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000048647	Exd1	99	73.252	ENSG00000178997	EXD1	99	73.252	Homo_sapiens
ENSMUSG00000048647	Exd1	99	74.653	ENSAMEG00000016793	EXD1	99	74.653	Ailuropoda_melanoleuca
ENSMUSG00000048647	Exd1	71	45.409	ENSAOCG00000009355	-	71	45.409	Amphiprion_ocellaris
ENSMUSG00000048647	Exd1	59	48.368	ENSAPEG00000002194	-	86	48.368	Amphiprion_percula
ENSMUSG00000048647	Exd1	69	58.481	ENSACAG00000003676	EXD1	100	58.481	Anolis_carolinensis
ENSMUSG00000048647	Exd1	99	73.124	ENSANAG00000029058	EXD1	99	73.124	Aotus_nancymaae
ENSMUSG00000048647	Exd1	70	42.432	ENSACLG00000001361	-	72	42.928	Astatotilapia_calliptera
ENSMUSG00000048647	Exd1	69	42.821	ENSAMXG00000026016	-	74	42.821	Astyanax_mexicanus
ENSMUSG00000048647	Exd1	83	73.684	ENSBTAG00000008363	EXD1	99	73.684	Bos_taurus
ENSMUSG00000048647	Exd1	99	68.412	ENSCJAG00000020765	EXD1	99	68.412	Callithrix_jacchus
ENSMUSG00000048647	Exd1	99	71.777	ENSCAFG00000009510	EXD1	99	71.777	Canis_familiaris
ENSMUSG00000048647	Exd1	74	70.353	ENSCAFG00020005504	EXD1	99	70.353	Canis_lupus_dingo
ENSMUSG00000048647	Exd1	99	70.599	ENSCHIG00000019606	EXD1	99	70.599	Capra_hircus
ENSMUSG00000048647	Exd1	99	69.825	ENSCPOG00000010573	EXD1	99	69.825	Cavia_porcellus
ENSMUSG00000048647	Exd1	99	69.983	ENSCCAG00000016905	EXD1	99	69.983	Cebus_capucinus
ENSMUSG00000048647	Exd1	99	73.647	ENSCATG00000037400	EXD1	99	73.647	Cercocebus_atys
ENSMUSG00000048647	Exd1	88	55.837	ENSCSAG00000007647	EXD1	99	55.837	Chlorocebus_sabaeus
ENSMUSG00000048647	Exd1	88	66.535	ENSCHOG00000011441	EXD1	99	66.535	Choloepus_hoffmanni
ENSMUSG00000048647	Exd1	99	52.167	ENSCPBG00000013511	EXD1	93	52.333	Chrysemys_picta_bellii
ENSMUSG00000048647	Exd1	99	69.808	ENSCANG00000036848	EXD1	99	69.808	Colobus_angolensis_palliatus
ENSMUSG00000048647	Exd1	100	85.664	ENSCGRG00001011355	Exd1	97	85.664	Cricetulus_griseus_chok1gshd
ENSMUSG00000048647	Exd1	100	85.664	ENSCGRG00000011633	Exd1	100	85.664	Cricetulus_griseus_crigri
ENSMUSG00000048647	Exd1	67	43.445	ENSCSEG00000000904	-	68	43.445	Cynoglossus_semilaevis
ENSMUSG00000048647	Exd1	63	35.655	ENSDARG00000098669	exd1	85	41.985	Danio_rerio
ENSMUSG00000048647	Exd1	99	73.693	ENSDNOG00000011410	EXD1	99	73.693	Dasypus_novemcinctus
ENSMUSG00000048647	Exd1	91	72.851	ENSDORG00000012079	Exd1	99	72.851	Dipodomys_ordii
ENSMUSG00000048647	Exd1	69	68.889	ENSETEG00000014257	-	78	68.889	Echinops_telfairi
ENSMUSG00000048647	Exd1	99	72.222	ENSEASG00005016394	EXD1	99	72.222	Equus_asinus_asinus
ENSMUSG00000048647	Exd1	99	73.997	ENSECAG00000021250	EXD1	99	73.997	Equus_caballus
ENSMUSG00000048647	Exd1	87	66.000	ENSEEUG00000001232	EXD1	99	66.000	Erinaceus_europaeus
ENSMUSG00000048647	Exd1	71	43.035	ENSELUG00000006324	-	67	43.035	Esox_lucius
ENSMUSG00000048647	Exd1	99	75.217	ENSFCAG00000028533	EXD1	99	75.217	Felis_catus
ENSMUSG00000048647	Exd1	57	45.201	ENSGMOG00000015956	-	96	44.410	Gadus_morhua
ENSMUSG00000048647	Exd1	67	51.646	ENSGALG00000041449	EXD1	95	51.646	Gallus_gallus
ENSMUSG00000048647	Exd1	71	41.584	ENSGAFG00000017161	-	74	41.584	Gambusia_affinis
ENSMUSG00000048647	Exd1	99	51.613	ENSGAGG00000019200	EXD1	93	51.613	Gopherus_agassizii
ENSMUSG00000048647	Exd1	99	73.427	ENSGGOG00000004594	EXD1	99	73.427	Gorilla_gorilla
ENSMUSG00000048647	Exd1	99	71.804	ENSHGLG00000015369	EXD1	99	71.804	Heterocephalus_glaber_female
ENSMUSG00000048647	Exd1	99	70.753	ENSHGLG00100007398	EXD1	100	70.753	Heterocephalus_glaber_male
ENSMUSG00000048647	Exd1	99	78.109	ENSSTOG00000014980	EXD1	99	78.109	Ictidomys_tridecemlineatus
ENSMUSG00000048647	Exd1	79	41.138	ENSLBEG00000000022	-	69	43.532	Labrus_bergylta
ENSMUSG00000048647	Exd1	75	49.423	ENSLACG00000006680	EXD1	72	49.423	Latimeria_chalumnae
ENSMUSG00000048647	Exd1	70	44.363	ENSLOCG00000012278	-	97	44.363	Lepisosteus_oculatus
ENSMUSG00000048647	Exd1	92	69.606	ENSLAFG00000014739	EXD1	99	69.606	Loxodonta_africana
ENSMUSG00000048647	Exd1	99	73.298	ENSMFAG00000034670	EXD1	99	73.298	Macaca_fascicularis
ENSMUSG00000048647	Exd1	99	73.298	ENSMMUG00000013991	EXD1	99	73.298	Macaca_mulatta
ENSMUSG00000048647	Exd1	99	73.473	ENSMNEG00000037333	EXD1	99	73.473	Macaca_nemestrina
ENSMUSG00000048647	Exd1	62	80.114	ENSMLEG00000033153	EXD1	97	85.614	Mandrillus_leucophaeus
ENSMUSG00000048647	Exd1	70	42.928	ENSMZEG00005009193	-	75	43.424	Maylandia_zebra
ENSMUSG00000048647	Exd1	67	51.276	ENSMGAG00000011179	EXD1	98	51.276	Meleagris_gallopavo
ENSMUSG00000048647	Exd1	100	84.939	ENSMAUG00000002698	Exd1	100	84.939	Mesocricetus_auratus
ENSMUSG00000048647	Exd1	99	75.958	ENSMICG00000014337	EXD1	99	75.958	Microcebus_murinus
ENSMUSG00000048647	Exd1	100	80.560	ENSMOCG00000018151	Exd1	100	80.560	Microtus_ochrogaster
ENSMUSG00000048647	Exd1	90	63.810	ENSMODG00000000164	EXD1	99	63.810	Monodelphis_domestica
ENSMUSG00000048647	Exd1	69	41.117	ENSMALG00000015814	-	87	40.741	Monopterus_albus
ENSMUSG00000048647	Exd1	100	95.614	MGP_CAROLIEiJ_G0024145	Exd1	100	95.614	Mus_caroli
ENSMUSG00000048647	Exd1	100	88.772	MGP_PahariEiJ_G0025588	Exd1	100	88.772	Mus_pahari
ENSMUSG00000048647	Exd1	100	97.544	MGP_SPRETEiJ_G0025061	Exd1	100	97.544	Mus_spretus
ENSMUSG00000048647	Exd1	99	74.564	ENSMPUG00000008811	EXD1	99	74.564	Mustela_putorius_furo
ENSMUSG00000048647	Exd1	92	72.401	ENSMLUG00000001466	EXD1	99	72.401	Myotis_lucifugus
ENSMUSG00000048647	Exd1	100	77.797	ENSNGAG00000002319	Exd1	100	77.797	Nannospalax_galili
ENSMUSG00000048647	Exd1	99	70.139	ENSNLEG00000003456	EXD1	98	71.542	Nomascus_leucogenys
ENSMUSG00000048647	Exd1	88	61.154	ENSOPRG00000016433	EXD1	99	61.154	Ochotona_princeps
ENSMUSG00000048647	Exd1	69	42.462	ENSONIG00000012043	-	99	43.216	Oreochromis_niloticus
ENSMUSG00000048647	Exd1	89	69.261	ENSOCUG00000013817	EXD1	99	69.261	Oryctolagus_cuniculus
ENSMUSG00000048647	Exd1	69	42.065	ENSORLG00000026344	-	74	42.065	Oryzias_latipes
ENSMUSG00000048647	Exd1	70	41.769	ENSORLG00020005465	-	76	41.769	Oryzias_latipes_hni
ENSMUSG00000048647	Exd1	70	42.015	ENSORLG00015004848	-	77	42.015	Oryzias_latipes_hsok
ENSMUSG00000048647	Exd1	67	43.959	ENSOMEG00000019812	-	77	43.243	Oryzias_melastigma
ENSMUSG00000048647	Exd1	90	66.731	ENSOGAG00000013095	EXD1	99	66.923	Otolemur_garnettii
ENSMUSG00000048647	Exd1	99	74.081	ENSOARG00000020330	EXD1	99	74.081	Ovis_aries
ENSMUSG00000048647	Exd1	99	73.427	ENSPPAG00000033760	EXD1	99	73.427	Pan_paniscus
ENSMUSG00000048647	Exd1	99	75.217	ENSPPRG00000011128	EXD1	99	75.217	Panthera_pardus
ENSMUSG00000048647	Exd1	99	75.043	ENSPTIG00000020026	EXD1	99	75.043	Panthera_tigris_altaica
ENSMUSG00000048647	Exd1	99	73.822	ENSPTRG00000006941	EXD1	99	73.601	Pan_troglodytes
ENSMUSG00000048647	Exd1	99	73.473	ENSPANG00000019000	EXD1	99	73.473	Papio_anubis
ENSMUSG00000048647	Exd1	68	41.985	ENSPKIG00000000671	-	70	41.985	Paramormyrops_kingsleyae
ENSMUSG00000048647	Exd1	98	52.448	ENSPSIG00000014473	EXD1	92	52.373	Pelodiscus_sinensis
ENSMUSG00000048647	Exd1	86	34.809	ENSPMGG00000015466	-	98	34.809	Periophthalmus_magnuspinnatus
ENSMUSG00000048647	Exd1	85	64.575	ENSPCIG00000027845	EXD1	98	64.575	Phascolarctos_cinereus
ENSMUSG00000048647	Exd1	69	41.045	ENSPFOG00000013673	-	97	41.045	Poecilia_formosa
ENSMUSG00000048647	Exd1	71	41.422	ENSPLAG00000014262	-	81	40.179	Poecilia_latipinna
ENSMUSG00000048647	Exd1	71	41.667	ENSPMEG00000012071	-	74	41.667	Poecilia_mexicana
ENSMUSG00000048647	Exd1	71	42.402	ENSPREG00000019468	-	74	42.402	Poecilia_reticulata
ENSMUSG00000048647	Exd1	88	72.727	ENSPPYG00000006369	EXD1	98	72.727	Pongo_abelii
ENSMUSG00000048647	Exd1	68	61.282	ENSPCAG00000005269	-	75	61.282	Procavia_capensis
ENSMUSG00000048647	Exd1	99	72.997	ENSPCOG00000026598	EXD1	99	74.612	Propithecus_coquereli
ENSMUSG00000048647	Exd1	88	74.451	ENSPVAG00000003149	EXD1	98	74.451	Pteropus_vampyrus
ENSMUSG00000048647	Exd1	72	42.593	ENSPNAG00000008931	exd1	84	42.593	Pygocentrus_nattereri
ENSMUSG00000048647	Exd1	100	87.368	ENSRNOG00000025360	Exd1	100	87.368	Rattus_norvegicus
ENSMUSG00000048647	Exd1	62	84.659	ENSRBIG00000037257	EXD1	100	84.659	Rhinopithecus_bieti
ENSMUSG00000048647	Exd1	99	73.298	ENSRROG00000034491	EXD1	99	73.298	Rhinopithecus_roxellana
ENSMUSG00000048647	Exd1	99	65.271	ENSSBOG00000024842	EXD1	99	65.271	Saimiri_boliviensis_boliviensis
ENSMUSG00000048647	Exd1	89	64.054	ENSSHAG00000016701	EXD1	97	64.054	Sarcophilus_harrisii
ENSMUSG00000048647	Exd1	70	45.250	ENSSDUG00000004368	exd1	67	45.500	Seriola_dumerili
ENSMUSG00000048647	Exd1	85	70.204	ENSSARG00000009556	-	98	69.583	Sorex_araneus
ENSMUSG00000048647	Exd1	98	44.194	ENSSPUG00000001716	EXD1	91	44.194	Sphenodon_punctatus
ENSMUSG00000048647	Exd1	99	74.042	ENSSSCG00000004752	EXD1	99	74.042	Sus_scrofa
ENSMUSG00000048647	Exd1	67	40.256	ENSTNIG00000017431	-	93	40.256	Tetraodon_nigroviridis
ENSMUSG00000048647	Exd1	74	60.047	ENSTBEG00000003085	EXD1	99	60.047	Tupaia_belangeri
ENSMUSG00000048647	Exd1	87	73.307	ENSTTRG00000009809	EXD1	97	73.307	Tursiops_truncatus
ENSMUSG00000048647	Exd1	99	75.261	ENSUMAG00000012170	EXD1	99	75.261	Ursus_maritimus
ENSMUSG00000048647	Exd1	89	73.281	ENSVPAG00000007758	EXD1	99	73.281	Vicugna_pacos
ENSMUSG00000048647	Exd1	99	71.777	ENSVVUG00000026704	EXD1	99	71.777	Vulpes_vulpes
ENSMUSG00000048647	Exd1	68	47.208	ENSXETG00000017895	exd1	95	47.208	Xenopus_tropicalis
ENSMUSG00000048647	Exd1	58	41.818	ENSXCOG00000010879	-	84	41.818	Xiphophorus_couchianus
ENSMUSG00000048647	Exd1	64	42.149	ENSXMAG00000014462	-	86	41.742	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	-	IEA	Function
GO:0031047	gene silencing by RNA	26669262.	IMP	Process
GO:0034587	piRNA metabolic process	26669262.	IMP	Process
GO:0051321	meiotic cell cycle	-	IEA	Process
GO:1990923	PET complex	26669262.	IDA	Component