EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000048696 (Gene tree)
Gene ID: 237400
Gene Symbol: Mex3d
Alias: Rkhd1
Full Name: mex3 RNA binding family member D
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 7305 bases
Position: chr10:80380355-80387659
Accession: 2681847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000100987	KH_1	PF00013.29	7.4e-25	1	2
ENSMUSP00000100987	KH_1	PF00013.29	7.4e-25	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123141	-	1358	-	ENSMUSP00000115410	268 (aa)	-	F6TY75
ENSMUST00000105350	-	3266	XM_006513619	ENSMUSP00000100987	718 (aa)	XP_006513682	D3YTR3

Gene Model

Click here to download ENSMUSG00000048696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000048696's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000048696	Mex3d	68	52.033	ENSMUSG00000037253	Mex3c	67	52.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000048696	Mex3d	76	79.566	ENSG00000181588	MEX3D	100	80.108	Homo_sapiens
ENSMUSG00000048696	Mex3d	75	50.887	ENSAPOG00000000124	MEX3D	99	51.327	Acanthochromis_polyacanthus
ENSMUSG00000048696	Mex3d	62	80.095	ENSACIG00000017738	-	78	67.857	Amphilophus_citrinellus
ENSMUSG00000048696	Mex3d	70	53.757	ENSAOCG00000015529	MEX3D	96	53.992	Amphiprion_ocellaris
ENSMUSG00000048696	Mex3d	70	53.757	ENSAPEG00000012520	MEX3D	96	53.992	Amphiprion_percula
ENSMUSG00000048696	Mex3d	72	50.088	ENSATEG00000015620	MEX3D	96	50.261	Anabas_testudineus
ENSMUSG00000048696	Mex3d	75	74.677	ENSANAG00000035413	-	86	77.318	Aotus_nancymaae
ENSMUSG00000048696	Mex3d	74	51.264	ENSACLG00000002826	MEX3D	93	51.439	Astatotilapia_calliptera
ENSMUSG00000048696	Mex3d	60	75.556	ENSAMXG00000042500	MEX3D	95	53.654	Astyanax_mexicanus
ENSMUSG00000048696	Mex3d	75	77.677	ENSBTAG00000040334	MEX3D	82	80.216	Bos_taurus
ENSMUSG00000048696	Mex3d	74	80.370	ENSCJAG00000045432	MEX3D	82	80.072	Callithrix_jacchus
ENSMUSG00000048696	Mex3d	66	79.185	ENSCAFG00000023712	MEX3D	100	79.399	Canis_familiaris
ENSMUSG00000048696	Mex3d	72	79.693	ENSCAFG00020017245	MEX3D	84	77.577	Canis_lupus_dingo
ENSMUSG00000048696	Mex3d	75	78.285	ENSCHIG00000012929	MEX3D	82	80.396	Capra_hircus
ENSMUSG00000048696	Mex3d	75	80.586	ENSCCAG00000028942	MEX3D	99	80.576	Cebus_capucinus
ENSMUSG00000048696	Mex3d	76	80.944	ENSCATG00000029350	MEX3D	87	80.762	Cercocebus_atys
ENSMUSG00000048696	Mex3d	76	81.125	ENSCSAG00000011984	MEX3D	89	80.944	Chlorocebus_sabaeus
ENSMUSG00000048696	Mex3d	75	63.100	ENSCPBG00000018438	MEX3D	82	64.771	Chrysemys_picta_bellii
ENSMUSG00000048696	Mex3d	100	95.387	ENSCGRG00001023775	Mex3d	100	93.023	Cricetulus_griseus_chok1gshd
ENSMUSG00000048696	Mex3d	83	95.159	ENSCGRG00000018060	Mex3d	100	95.159	Cricetulus_griseus_crigri
ENSMUSG00000048696	Mex3d	70	48.748	ENSCSEG00000014157	MEX3D	95	52.308	Cynoglossus_semilaevis
ENSMUSG00000048696	Mex3d	70	53.831	ENSCVAG00000021251	MEX3D	89	49.420	Cyprinodon_variegatus
ENSMUSG00000048696	Mex3d	51	74.211	ENSDNOG00000041317	-	99	73.737	Dasypus_novemcinctus
ENSMUSG00000048696	Mex3d	75	80.762	ENSEASG00005021741	MEX3D	82	82.033	Equus_asinus_asinus
ENSMUSG00000048696	Mex3d	75	81.056	ENSECAG00000030546	MEX3D	59	82.332	Equus_caballus
ENSMUSG00000048696	Mex3d	72	49.343	ENSELUG00000008214	MEX3D	97	53.497	Esox_lucius
ENSMUSG00000048696	Mex3d	72	80.192	ENSFCAG00000043755	MEX3D	98	80.364	Felis_catus
ENSMUSG00000048696	Mex3d	70	66.469	ENSGALG00000052296	MEX3D	90	64.950	Gallus_gallus
ENSMUSG00000048696	Mex3d	59	67.925	ENSGAFG00000008425	MEX3D	91	69.057	Gambusia_affinis
ENSMUSG00000048696	Mex3d	68	51.838	ENSGACG00000015299	MEX3D	94	52.803	Gasterosteus_aculeatus
ENSMUSG00000048696	Mex3d	75	63.100	ENSGAGG00000001233	MEX3D	80	63.853	Gopherus_agassizii
ENSMUSG00000048696	Mex3d	72	78.846	ENSGGOG00000001083	-	100	78.887	Gorilla_gorilla
ENSMUSG00000048696	Mex3d	74	52.277	ENSHBUG00000021600	MEX3D	93	51.805	Haplochromis_burtoni
ENSMUSG00000048696	Mex3d	74	79.926	ENSHGLG00000015152	MEX3D	92	79.412	Heterocephalus_glaber_female
ENSMUSG00000048696	Mex3d	72	52.285	ENSHCOG00000001289	MEX3D	83	53.261	Hippocampus_comes
ENSMUSG00000048696	Mex3d	61	72.222	ENSIPUG00000019444	MEX3D	89	53.475	Ictalurus_punctatus
ENSMUSG00000048696	Mex3d	73	85.255	ENSSTOG00000025299	MEX3D	100	85.255	Ictidomys_tridecemlineatus
ENSMUSG00000048696	Mex3d	79	84.629	ENSJJAG00000024350	Mex3d	97	84.629	Jaculus_jaculus
ENSMUSG00000048696	Mex3d	54	58.205	ENSKMAG00000006645	MEX3D	98	52.555	Kryptolebias_marmoratus
ENSMUSG00000048696	Mex3d	74	50.089	ENSLBEG00000000974	MEX3D	84	52.220	Labrus_bergylta
ENSMUSG00000048696	Mex3d	72	59.962	ENSLACG00000016407	MEX3D	81	59.083	Latimeria_chalumnae
ENSMUSG00000048696	Mex3d	74	78.996	ENSMFAG00000043798	MEX3D	100	78.810	Macaca_fascicularis
ENSMUSG00000048696	Mex3d	74	82.004	ENSMMUG00000043577	MEX3D	96	78.452	Macaca_mulatta
ENSMUSG00000048696	Mex3d	76	69.928	ENSMNEG00000043766	MEX3D	87	70.471	Macaca_nemestrina
ENSMUSG00000048696	Mex3d	74	49.396	ENSMAMG00000009575	MEX3D	88	49.435	Mastacembelus_armatus
ENSMUSG00000048696	Mex3d	74	49.574	ENSMZEG00005025626	MEX3D	86	51.115	Maylandia_zebra
ENSMUSG00000048696	Mex3d	66	65.106	ENSMGAG00000002325	MEX3D	100	64.331	Meleagris_gallopavo
ENSMUSG00000048696	Mex3d	91	93.750	ENSMAUG00000014977	Mex3d	100	90.909	Mesocricetus_auratus
ENSMUSG00000048696	Mex3d	72	83.430	ENSMICG00000036648	MEX3D	83	81.555	Microcebus_murinus
ENSMUSG00000048696	Mex3d	85	92.369	ENSMOCG00000010308	Mex3d	100	92.369	Microtus_ochrogaster
ENSMUSG00000048696	Mex3d	74	64.880	ENSMODG00000004116	MEX3D	97	66.971	Monodelphis_domestica
ENSMUSG00000048696	Mex3d	69	52.148	ENSMALG00000020525	MEX3D	95	53.204	Monopterus_albus
ENSMUSG00000048696	Mex3d	100	99.443	MGP_CAROLIEiJ_G0015582	Mex3d	100	99.509	Mus_caroli
ENSMUSG00000048696	Mex3d	100	99.582	MGP_SPRETEiJ_G0016400	Mex3d	100	99.673	Mus_spretus
ENSMUSG00000048696	Mex3d	65	75.589	ENSMLUG00000017018	MEX3D	96	75.375	Myotis_lucifugus
ENSMUSG00000048696	Mex3d	100	80.913	ENSNGAG00000021771	Mex3d	100	83.850	Nannospalax_galili
ENSMUSG00000048696	Mex3d	64	71.111	ENSNBRG00000020089	MEX3D	92	51.264	Neolamprologus_brichardi
ENSMUSG00000048696	Mex3d	61	84.000	ENSNLEG00000001719	-	99	83.243	Nomascus_leucogenys
ENSMUSG00000048696	Mex3d	66	66.253	ENSMEUG00000016404	-	100	66.530	Notamacropus_eugenii
ENSMUSG00000048696	Mex3d	57	79.208	ENSOPRG00000008708	-	94	80.977	Ochotona_princeps
ENSMUSG00000048696	Mex3d	72	79.696	ENSODEG00000012631	MEX3D	94	78.860	Octodon_degus
ENSMUSG00000048696	Mex3d	70	52.852	ENSORLG00000015223	MEX3D	85	52.827	Oryzias_latipes
ENSMUSG00000048696	Mex3d	70	53.462	ENSORLG00020017489	MEX3D	85	53.707	Oryzias_latipes_hni
ENSMUSG00000048696	Mex3d	76	51.706	ENSORLG00015017429	MEX3D	89	54.175	Oryzias_latipes_hsok
ENSMUSG00000048696	Mex3d	63	67.797	ENSOMEG00000020682	MEX3D	99	52.110	Oryzias_melastigma
ENSMUSG00000048696	Mex3d	72	82.592	ENSOGAG00000032843	MEX3D	100	81.868	Otolemur_garnettii
ENSMUSG00000048696	Mex3d	77	80.466	ENSPTRG00000010208	MEX3D	92	80.466	Pan_troglodytes
ENSMUSG00000048696	Mex3d	75	77.222	ENSPANG00000025407	MEX3D	82	76.481	Papio_anubis
ENSMUSG00000048696	Mex3d	70	51.262	ENSPKIG00000018608	MEX3D	91	53.612	Paramormyrops_kingsleyae
ENSMUSG00000048696	Mex3d	69	52.673	ENSPKIG00000011176	-	90	51.252	Paramormyrops_kingsleyae
ENSMUSG00000048696	Mex3d	64	68.519	ENSPMGG00000017213	-	87	49.171	Periophthalmus_magnuspinnatus
ENSMUSG00000048696	Mex3d	74	65.989	ENSPCIG00000000826	MEX3D	76	65.653	Phascolarctos_cinereus
ENSMUSG00000048696	Mex3d	72	52.000	ENSPFOG00000013402	MEX3D	97	52.415	Poecilia_formosa
ENSMUSG00000048696	Mex3d	72	50.478	ENSPLAG00000018945	MEX3D	94	67.925	Poecilia_latipinna
ENSMUSG00000048696	Mex3d	72	50.383	ENSPMEG00000009307	MEX3D	90	67.925	Poecilia_mexicana
ENSMUSG00000048696	Mex3d	63	67.925	ENSPREG00000017736	MEX3D	93	52.533	Poecilia_reticulata
ENSMUSG00000048696	Mex3d	69	81.288	ENSPPYG00000009324	-	97	81.325	Pongo_abelii
ENSMUSG00000048696	Mex3d	76	82.278	ENSPCOG00000021111	MEX3D	92	82.278	Propithecus_coquereli
ENSMUSG00000048696	Mex3d	74	52.641	ENSPNYG00000006622	-	93	52.441	Pundamilia_nyererei
ENSMUSG00000048696	Mex3d	70	51.779	ENSPNAG00000027243	MEX3D	95	53.585	Pygocentrus_nattereri
ENSMUSG00000048696	Mex3d	90	96.749	ENSRNOG00000030830	Mex3d	98	96.749	Rattus_norvegicus
ENSMUSG00000048696	Mex3d	68	54.309	ENSSFOG00015003876	mex3d	86	51.773	Scleropages_formosus
ENSMUSG00000048696	Mex3d	53	58.333	ENSSMAG00000003087	MEX3D	84	52.252	Scophthalmus_maximus
ENSMUSG00000048696	Mex3d	68	49.900	ENSSDUG00000015559	MEX3D	81	51.205	Seriola_dumerili
ENSMUSG00000048696	Mex3d	72	50.088	ENSSLDG00000010251	MEX3D	85	50.256	Seriola_lalandi_dorsalis
ENSMUSG00000048696	Mex3d	76	60.326	ENSSPUG00000015849	MEX3D	82	62.050	Sphenodon_punctatus
ENSMUSG00000048696	Mex3d	74	51.852	ENSSPAG00000005264	MEX3D	98	49.754	Stegastes_partitus
ENSMUSG00000048696	Mex3d	75	81.250	ENSSSCG00000021750	MEX3D	83	81.818	Sus_scrofa
ENSMUSG00000048696	Mex3d	68	64.008	ENSTGUG00000000201	MEX3D	99	64.155	Taeniopygia_guttata
ENSMUSG00000048696	Mex3d	63	66.038	ENSTRUG00000007986	MEX3D	95	51.838	Takifugu_rubripes
ENSMUSG00000048696	Mex3d	69	50.851	ENSTNIG00000015325	MEX3D	94	53.497	Tetraodon_nigroviridis
ENSMUSG00000048696	Mex3d	69	81.010	ENSTTRG00000008132	MEX3D	97	81.288	Tursiops_truncatus
ENSMUSG00000048696	Mex3d	52	71.111	ENSXCOG00000008198	MEX3D	90	71.111	Xiphophorus_couchianus
ENSMUSG00000048696	Mex3d	72	52.471	ENSXMAG00000025266	MEX3D	96	53.383	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006402	mRNA catabolic process	-	ISO	Process
GO:0017091	AU-rich element binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0050779	RNA destabilization	-	ISO	Process
GO:0061157	mRNA destabilization	14769789.	NAS	Process