EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000049313 (Gene tree)
Gene ID: 20660
Gene Symbol: Sorl1
Alias: 2900010L19Rik|LR11|Sorla|mSorLA
Full Name: sortilin-related receptor%2C LDLR class A repeats-containing
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 159578
Position: chr9: 41964720-42124297
Accession: 1202296
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148800	-	654	-	-	- (aa)	-	-
ENSMUST00000134560	-	769	-	-	- (aa)	-	-
ENSMUST00000060989	-	10715	XM_017313238	ENSMUSP00000058613	2215 (aa)	-	O88307
ENSMUST00000139133	-	224	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000049313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000049313's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001540	amyloid-beta binding	-	ISO	Function
GO:0005515	protein binding	18480253.19047013.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005641	nuclear envelope lumen	18362153.	IDA	Component
GO:0005641	nuclear envelope lumen	-	ISO	Component
GO:0005768	endosome	-	ISO	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005771	multivesicular body	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005802	trans-Golgi network	-	ISO	Component
GO:0006605	protein targeting	-	ISO	Process
GO:0006622	protein targeting to lysosome	-	ISO	Process
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006869	lipid transport	-	IEA	Process
GO:0006892	post-Golgi vesicle-mediated transport	-	ISO	Process
GO:0006897	endocytosis	-	IEA	Process
GO:0007275	multicellular organism development	-	IEA	Process
GO:0008202	steroid metabolic process	-	IEA	Process
GO:0008203	cholesterol metabolic process	-	IEA	Process
GO:0014910	regulation of smooth muscle cell migration	-	ISO	Process
GO:0016020	membrane	-	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016477	cell migration	-	ISO	Process
GO:0030169	low-density lipoprotein particle binding	-	ISO	Function
GO:0030306	ADP-ribosylation factor binding	-	ISO	Function
GO:0031985	Golgi cisterna	-	ISO	Component
GO:0032091	negative regulation of protein binding	-	ISO	Process
GO:0032460	negative regulation of protein oligomerization	-	ISO	Process
GO:0034067	protein localization to Golgi apparatus	-	ISO	Process
GO:0034362	low-density lipoprotein particle	-	IEA	Component
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043407	negative regulation of MAP kinase activity	18362153.	IMP	Process
GO:0045053	protein retention in Golgi apparatus	18362153.	IMP	Process
GO:0045053	protein retention in Golgi apparatus	-	ISO	Process
GO:0045732	positive regulation of protein catabolic process	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	19047013.	ISO	Component
GO:0050768	negative regulation of neurogenesis	18362153.	IMP	Process
GO:0051604	protein maturation	-	ISO	Process
GO:0055037	recycling endosome	-	ISO	Component
GO:0070863	positive regulation of protein exit from endoplasmic reticulum	-	ISO	Process
GO:1901215	negative regulation of neuron death	22986780.	IMP	Process
GO:1902430	negative regulation of amyloid-beta formation	18362153.19036982.	IMP	Process
GO:1902430	negative regulation of amyloid-beta formation	-	ISO	Process
GO:1902771	positive regulation of choline O-acetyltransferase activity	22986780.	IMP	Process
GO:1902948	negative regulation of tau-protein kinase activity	22986780.	IMP	Process
GO:1902953	positive regulation of ER to Golgi vesicle-mediated transport	-	ISO	Process
GO:1902955	positive regulation of early endosome to recycling endosome transport	-	ISO	Process
GO:1902960	negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process	18362153.	IMP	Process
GO:1902960	negative regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process	-	ISO	Process
GO:1902963	negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process	18362153.	IMP	Process
GO:1902963	negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process	-	ISO	Process
GO:1902966	positive regulation of protein localization to early endosome	-	ISO	Process
GO:1902997	negative regulation of neurofibrillary tangle assembly	22986780.	IMP	Process
GO:2001137	positive regulation of endocytic recycling	-	ISO	Process