EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000049553 (Gene tree)
Gene ID
20019
Gene Symbol
Polr1a
Alias
194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1
Full Name
polymerase (RNA) I polypeptide A
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
75883 bases
Position
chr6:71909053-71984935
Accession
1096397
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000060858RNA_pol_Rpb1_5PF04998.178.4e-10311
ENSMUSP00000060858RNA_pol_Rpb1_4PF05000.171.9e-2511
ENSMUSP00000060858RNA_pol_Rpb1_2PF00623.204.5e-7011
ENSMUSP00000060858RNA_pol_Rpb1_3PF04983.181.1e-3611
ENSMUSP00000060858RNA_pol_Rpb1_1PF04997.121.8e-2111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000206753-3302--- (aa)--
ENSMUST00000206556-3394-ENSMUSP00000146166282 (aa)-A0A0U1RPX8
ENSMUST00000055296-9216XM_006505804ENSMUSP000000608581717 (aa)XP_006505867O35134
ENSMUST00000205842-1492--- (aa)--
ENSMUST00000205333-359--- (aa)--
ENSMUST00000205517-4572-ENSMUSP00000146050743 (aa)-A0A0U1RPM9
ENSMUST00000206823-352--- (aa)--
ENSMUST00000205942-584--- (aa)--
ENSMUST00000206513-625-ENSMUSP0000014555348 (aa)-A0A0U1RNG3
ENSMUST00000206982-554--- (aa)--
Gene Model
Click here to download ENSMUSG00000049553's gene model file
Pathways
Pathway IDPathway NameSource
mmu03020RNA polymeraseKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000049553's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000049553Polr1a7333.333ENSMUSG00000005198Polr2a5137.143
ENSMUSG00000049553Polr1a6331.876ENSMUSG00000025280Polr3a7032.623
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000049553Polr1a10085.871ENSG00000068654POLR1A10086.277Homo_sapiens
ENSMUSG00000049553Polr1a9952.143ENSAPOG00000017945polr1a9966.974Acanthochromis_polyacanthus
ENSMUSG00000049553Polr1a10086.361ENSAMEG00000005807POLR1A10088.730Ailuropoda_melanoleuca
ENSMUSG00000049553Polr1a9667.289ENSACIG00000022147polr1a10066.736Amphilophus_citrinellus
ENSMUSG00000049553Polr1a10065.081ENSAOCG00000017336polr1a10067.439Amphiprion_ocellaris
ENSMUSG00000049553Polr1a10065.023ENSAPEG00000016105polr1a9770.139Amphiprion_percula
ENSMUSG00000049553Polr1a10064.882ENSATEG00000016773polr1a10064.919Anabas_testudineus
ENSMUSG00000049553Polr1a9965.563ENSAPLG00000013871POLR1A9972.283Anas_platyrhynchos
ENSMUSG00000049553Polr1a9968.735ENSACAG00000012141POLR1A9968.580Anolis_carolinensis
ENSMUSG00000049553Polr1a10085.921ENSANAG00000033927POLR1A10086.095Aotus_nancymaae
ENSMUSG00000049553Polr1a10061.387ENSACLG00000020541polr1a10061.659Astatotilapia_calliptera
ENSMUSG00000049553Polr1a5561.205ENSAMXG00000011553-9465.076Astyanax_mexicanus
ENSMUSG00000049553Polr1a8558.159ENSAMXG00000011559-8558.159Astyanax_mexicanus
ENSMUSG00000049553Polr1a10086.493ENSBTAG00000006481POLR1A10086.427Bos_taurus
ENSMUSG00000049553Polr1a9939.370WBGene00012999rpoa-19838.695Caenorhabditis_elegans
ENSMUSG00000049553Polr1a10085.177ENSCJAG00000019547POLR1A10085.582Callithrix_jacchus
ENSMUSG00000049553Polr1a10085.789ENSCAFG00000007613POLR1A10085.963Canis_familiaris
ENSMUSG00000049553Polr1a10086.079ENSCAFG00020014752POLR1A10086.253Canis_lupus_dingo
ENSMUSG00000049553Polr1a10085.847ENSCHIG00000018204POLR1A10085.448Capra_hircus
ENSMUSG00000049553Polr1a10084.968ENSTSYG00000002761POLR1A10085.200Carlito_syrichta
ENSMUSG00000049553Polr1a9782.497ENSCAPG00000010132POLR1A10082.666Cavia_aperea
ENSMUSG00000049553Polr1a10087.027ENSCPOG00000012350POLR1A10087.202Cavia_porcellus
ENSMUSG00000049553Polr1a10085.756ENSCCAG00000019839POLR1A10086.161Cebus_capucinus
ENSMUSG00000049553Polr1a10085.929ENSCATG00000029786POLR1A10086.277Cercocebus_atys
ENSMUSG00000049553Polr1a10087.108ENSCLAG00000005187POLR1A10087.050Chinchilla_lanigera
ENSMUSG00000049553Polr1a10085.929ENSCSAG00000016251POLR1A10086.277Chlorocebus_sabaeus
ENSMUSG00000049553Polr1a9972.043ENSCHOG00000003766-8490.955Choloepus_hoffmanni
ENSMUSG00000049553Polr1a9973.868ENSCPBG00000001115POLR1A9974.055Chrysemys_picta_bellii
ENSMUSG00000049553Polr1a9943.864ENSCING00000007684-9942.490Ciona_intestinalis
ENSMUSG00000049553Polr1a8975.641ENSCSAVG00000007184-9949.539Ciona_savignyi
ENSMUSG00000049553Polr1a10083.333ENSCANG00000031785POLR1A10083.218Colobus_angolensis_palliatus
ENSMUSG00000049553Polr1a9990.457ENSCGRG00001006651Polr1a10087.667Cricetulus_griseus_chok1gshd
ENSMUSG00000049553Polr1a9988.889ENSCGRG00000007004-9788.929Cricetulus_griseus_crigri
ENSMUSG00000049553Polr1a9990.457ENSCGRG00000010834Polr1a10092.105Cricetulus_griseus_crigri
ENSMUSG00000049553Polr1a10061.534ENSCSEG00000020190polr1a10061.034Cynoglossus_semilaevis
ENSMUSG00000049553Polr1a10063.642ENSCVAG00000020941polr1a10063.647Cyprinodon_variegatus
ENSMUSG00000049553Polr1a10066.609ENSDARG00000098375polr1a10066.318Danio_rerio
ENSMUSG00000049553Polr1a10080.568ENSDNOG00000010829POLR1A10080.742Dasypus_novemcinctus
ENSMUSG00000049553Polr1a10087.493ENSDORG00000008298Polr1a10087.840Dipodomys_ordii
ENSMUSG00000049553Polr1a9980.645ENSETEG00000000412-7296.875Echinops_telfairi
ENSMUSG00000049553Polr1a9942.838ENSEBUG00000005667-9366.667Eptatretus_burgeri
ENSMUSG00000049553Polr1a10086.624ENSEASG00005001625POLR1A10087.087Equus_asinus_asinus
ENSMUSG00000049553Polr1a10086.508ENSECAG00000036306-10088.751Equus_caballus
ENSMUSG00000049553Polr1a10086.508ENSECAG00000010092POLR1A10088.751Equus_caballus
ENSMUSG00000049553Polr1a10086.508ENSECAG00000030510-10088.751Equus_caballus
ENSMUSG00000049553Polr1a8591.489ENSEEUG00000000676POLR1A8591.489Erinaceus_europaeus
ENSMUSG00000049553Polr1a10065.493ENSELUG00000012769polr1a9966.453Esox_lucius
ENSMUSG00000049553Polr1a10086.145ENSFCAG00000008966POLR1A10086.319Felis_catus
ENSMUSG00000049553Polr1a9971.269ENSFALG00000010082POLR1A9971.202Ficedula_albicollis
ENSMUSG00000049553Polr1a10087.267ENSFDAG00000013726POLR1A10087.326Fukomys_damarensis
ENSMUSG00000049553Polr1a10060.522ENSFHEG00000005996polr1a10060.671Fundulus_heteroclitus
ENSMUSG00000049553Polr1a10060.093ENSGMOG00000002230polr1a10059.860Gadus_morhua
ENSMUSG00000049553Polr1a9961.649ENSGALG00000038160-9968.462Gallus_gallus
ENSMUSG00000049553Polr1a10063.921ENSGAFG00000015266polr1a10063.337Gambusia_affinis
ENSMUSG00000049553Polr1a10063.652ENSGACG00000018791polr1a10063.715Gasterosteus_aculeatus
ENSMUSG00000049553Polr1a9968.407ENSGAGG00000004984-9680.176Gopherus_agassizii
ENSMUSG00000049553Polr1a8657.028ENSGAGG00000020105-8957.028Gopherus_agassizii
ENSMUSG00000049553Polr1a10085.871ENSGGOG00000001788POLR1A10086.277Gorilla_gorilla
ENSMUSG00000049553Polr1a8669.970ENSHBUG00000020021polr1a9770.265Haplochromis_burtoni
ENSMUSG00000049553Polr1a10087.725ENSHGLG00000006334POLR1A10087.842Heterocephalus_glaber_female
ENSMUSG00000049553Polr1a10087.413ENSHGLG00100006614POLR1A10087.529Heterocephalus_glaber_male
ENSMUSG00000049553Polr1a10061.561ENSHCOG00000003345polr1a10061.242Hippocampus_comes
ENSMUSG00000049553Polr1a10065.837ENSIPUG00000013174polr1a10065.912Ictalurus_punctatus
ENSMUSG00000049553Polr1a10085.440ENSSTOG00000012580POLR1A10085.498Ictidomys_tridecemlineatus
ENSMUSG00000049553Polr1a10088.379ENSJJAG00000013113Polr1a10088.553Jaculus_jaculus
ENSMUSG00000049553Polr1a10064.481ENSKMAG00000007399polr1a10064.107Kryptolebias_marmoratus
ENSMUSG00000049553Polr1a9468.054ENSLBEG00000015401polr1a9968.054Labrus_bergylta
ENSMUSG00000049553Polr1a9962.230ENSLACG00000003218polr1a9976.227Latimeria_chalumnae
ENSMUSG00000049553Polr1a10070.255ENSLOCG00000010881polr1a10069.452Lepisosteus_oculatus
ENSMUSG00000049553Polr1a10085.573ENSLAFG00000014948POLR1A10085.706Loxodonta_africana
ENSMUSG00000049553Polr1a10085.929ENSMFAG00000046097POLR1A10085.987Macaca_fascicularis
ENSMUSG00000049553Polr1a10085.929ENSMMUG00000015815POLR1A10085.987Macaca_mulatta
ENSMUSG00000049553Polr1a10085.929ENSMNEG00000043313POLR1A10085.987Macaca_nemestrina
ENSMUSG00000049553Polr1a10085.292ENSMLEG00000042428POLR1A10085.640Mandrillus_leucophaeus
ENSMUSG00000049553Polr1a10065.124ENSMAMG00000016565polr1a10065.124Mastacembelus_armatus
ENSMUSG00000049553Polr1a10064.682ENSMZEG00005004915polr1a10064.907Maylandia_zebra
ENSMUSG00000049553Polr1a9968.681ENSMGAG00000013111POLR1A9968.739Meleagris_gallopavo
ENSMUSG00000049553Polr1a9990.310ENSMAUG00000008497Polr1a10093.139Mesocricetus_auratus
ENSMUSG00000049553Polr1a10086.574ENSMICG00000000757POLR1A10086.690Microcebus_murinus
ENSMUSG00000049553Polr1a10092.375ENSMOCG00000000122Polr1a10092.724Microtus_ochrogaster
ENSMUSG00000049553Polr1a10064.494ENSMMOG00000010216polr1a10064.514Mola_mola
ENSMUSG00000049553Polr1a10073.911ENSMODG00000009335POLR1A10073.612Monodelphis_domestica
ENSMUSG00000049553Polr1a10064.406ENSMALG00000013363polr1a10064.327Monopterus_albus
ENSMUSG00000049553Polr1a10098.195MGP_CAROLIEiJ_G0028494Polr1a10098.195Mus_caroli
ENSMUSG00000049553Polr1a10095.108MGP_PahariEiJ_G0022230Polr1a10094.991Mus_pahari
ENSMUSG00000049553Polr1a100100.000MGP_SPRETEiJ_G0029499Polr1a100100.000Mus_spretus
ENSMUSG00000049553Polr1a10086.377ENSMPUG00000009135POLR1A10086.551Mustela_putorius_furo
ENSMUSG00000049553Polr1a10085.466ENSMLUG00000015723POLR1A10085.640Myotis_lucifugus
ENSMUSG00000049553Polr1a10089.645ENSNGAG00000017907Polr1a10090.169Nannospalax_galili
ENSMUSG00000049553Polr1a10065.081ENSNBRG00000000519polr1a10065.081Neolamprologus_brichardi
ENSMUSG00000049553Polr1a10083.631ENSNLEG00000002264POLR1A10083.919Nomascus_leucogenys
ENSMUSG00000049553Polr1a7592.913ENSMEUG00000011665-7592.913Notamacropus_eugenii
ENSMUSG00000049553Polr1a9979.767ENSOPRG00000008269POLR1A10080.742Ochotona_princeps
ENSMUSG00000049553Polr1a10087.616ENSODEG00000003542POLR1A10088.023Octodon_degus
ENSMUSG00000049553Polr1a10065.371ENSONIG00000015895polr1a10065.411Oreochromis_niloticus
ENSMUSG00000049553Polr1a9067.323ENSOANG00000012384-10070.219Ornithorhynchus_anatinus
ENSMUSG00000049553Polr1a6568.421ENSOANG00000000237-10068.293Ornithorhynchus_anatinus
ENSMUSG00000049553Polr1a10087.515ENSOCUG00000010138POLR1A10087.631Oryctolagus_cuniculus
ENSMUSG00000049553Polr1a10064.232ENSORLG00000008753polr1a9964.327Oryzias_latipes
ENSMUSG00000049553Polr1a10063.152ENSORLG00020020726polr1a9963.109Oryzias_latipes_hni
ENSMUSG00000049553Polr1a9671.277ENSORLG00015016071polr1a9971.277Oryzias_latipes_hsok
ENSMUSG00000049553Polr1a8258.874ENSOMEG00000019264-10049.530Oryzias_melastigma
ENSMUSG00000049553Polr1a5658.612ENSOMEG00000019310-9462.818Oryzias_melastigma
ENSMUSG00000049553Polr1a10087.030ENSOGAG00000004031POLR1A10086.682Otolemur_garnettii
ENSMUSG00000049553Polr1a10084.713ENSOARG00000020601POLR1A10085.723Ovis_aries
ENSMUSG00000049553Polr1a10085.698ENSPPAG00000042450POLR1A10086.103Pan_paniscus
ENSMUSG00000049553Polr1a10086.261ENSPPRG00000006702POLR1A10086.435Panthera_pardus
ENSMUSG00000049553Polr1a10085.789ENSPTIG00000018783POLR1A10085.962Panthera_tigris_altaica
ENSMUSG00000049553Polr1a10085.987ENSPTRG00000012147POLR1A10086.045Pan_troglodytes
ENSMUSG00000049553Polr1a10085.929ENSPANG00000025908POLR1A10086.277Papio_anubis
ENSMUSG00000049553Polr1a9473.611ENSPKIG00000005468polr1a9973.611Paramormyrops_kingsleyae
ENSMUSG00000049553Polr1a9967.426ENSPSIG00000009321-9971.852Pelodiscus_sinensis
ENSMUSG00000049553Polr1a9046.245ENSPMGG00000009718polr1a9567.622Periophthalmus_magnuspinnatus
ENSMUSG00000049553Polr1a10093.364ENSPEMG00000022224Polr1a10093.423Peromyscus_maniculatus_bairdii
ENSMUSG00000049553Polr1a9578.070ENSPCIG00000004222POLR1A9978.131Phascolarctos_cinereus
ENSMUSG00000049553Polr1a10064.269ENSPFOG00000005025polr1a10064.290Poecilia_formosa
ENSMUSG00000049553Polr1a10064.518ENSPLAG00000021389polr1a10064.228Poecilia_latipinna
ENSMUSG00000049553Polr1a10062.399ENSPMEG00000006463polr1a10062.920Poecilia_mexicana
ENSMUSG00000049553Polr1a10064.311ENSPREG00000002389polr1a10064.311Poecilia_reticulata
ENSMUSG00000049553Polr1a10085.408ENSPPYG00000012217POLR1A10085.814Pongo_abelii
ENSMUSG00000049553Polr1a9288.000ENSPCAG00000011582POLR1A9181.202Procavia_capensis
ENSMUSG00000049553Polr1a10086.863ENSPCOG00000026987POLR1A10087.037Propithecus_coquereli
ENSMUSG00000049553Polr1a9981.408ENSPVAG00000012674POLR1A9584.106Pteropus_vampyrus
ENSMUSG00000049553Polr1a10064.682ENSPNYG00000000026polr1a10064.907Pundamilia_nyererei
ENSMUSG00000049553Polr1a10067.324ENSPNAG00000019223polr1a9969.284Pygocentrus_nattereri
ENSMUSG00000049553Polr1a10094.351ENSRNOG00000009545Polr1a10094.292Rattus_norvegicus
ENSMUSG00000049553Polr1a10085.756ENSRBIG00000028335POLR1A10085.814Rhinopithecus_bieti
ENSMUSG00000049553Polr1a10085.698ENSRROG00000031473POLR1A10085.756Rhinopithecus_roxellana
ENSMUSG00000049553Polr1a9936.518YOR341WRPA1909935.932Saccharomyces_cerevisiae
ENSMUSG00000049553Polr1a10085.524ENSSBOG00000030262POLR1A10085.929Saimiri_boliviensis_boliviensis
ENSMUSG00000049553Polr1a10072.775ENSSHAG00000014739POLR1A10072.659Sarcophilus_harrisii
ENSMUSG00000049553Polr1a10067.307ENSSFOG00015019716polr1a10067.188Scleropages_formosus
ENSMUSG00000049553Polr1a10064.459ENSSMAG00000014342polr1a10064.364Scophthalmus_maximus
ENSMUSG00000049553Polr1a10066.010ENSSDUG00000014631polr1a10065.668Seriola_dumerili
ENSMUSG00000049553Polr1a10064.244ENSSLDG00000024095polr1a10063.984Seriola_lalandi_dorsalis
ENSMUSG00000049553Polr1a7595.745ENSSARG00000003136-7595.745Sorex_araneus
ENSMUSG00000049553Polr1a9576.410ENSSPUG00000004215POLR1A9876.410Sphenodon_punctatus
ENSMUSG00000049553Polr1a9946.237ENSSPAG00000016341polr1a9570.793Stegastes_partitus
ENSMUSG00000049553Polr1a9981.720ENSSSCG00000008226POLR1A9987.675Sus_scrofa
ENSMUSG00000049553Polr1a9970.501ENSTGUG00000010704POLR1A10070.501Taeniopygia_guttata
ENSMUSG00000049553Polr1a10062.811ENSTRUG00000002210polr1a9963.298Takifugu_rubripes
ENSMUSG00000049553Polr1a10059.122ENSTNIG00000010116polr1a10059.167Tetraodon_nigroviridis
ENSMUSG00000049553Polr1a9982.796ENSTBEG00000008646POLR1A7496.460Tupaia_belangeri
ENSMUSG00000049553Polr1a10082.472ENSTTRG00000008597POLR1A10082.472Tursiops_truncatus
ENSMUSG00000049553Polr1a9982.667ENSUAMG00000012158-9486.876Ursus_americanus
ENSMUSG00000049553Polr1a9972.043ENSUAMG00000000099-9872.143Ursus_americanus
ENSMUSG00000049553Polr1a10085.159ENSUMAG00000006700POLR1A10085.333Ursus_maritimus
ENSMUSG00000049553Polr1a10085.731ENSVVUG00000001245POLR1A10085.905Vulpes_vulpes
ENSMUSG00000049553Polr1a10067.779ENSXETG00000001952polr1a10069.182Xenopus_tropicalis
ENSMUSG00000049553Polr1a5361.745ENSXCOG00000013384polr1a9274.542Xiphophorus_couchianus
ENSMUSG00000049553Polr1a5259.173ENSXCOG00000007112-9162.298Xiphophorus_couchianus
ENSMUSG00000049553Polr1a10064.426ENSXMAG00000004032polr1a10063.979Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001054RNA polymerase I activity21873635.IBAFunction
GO:0001054RNA polymerase I activity-ISOFunction
GO:0003677DNA binding-IEAFunction
GO:0003682chromatin binding-ISOFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity21873635.IBAFunction
GO:0003899DNA-directed 5'-3' RNA polymerase activity-ISOFunction
GO:0005515protein binding9236775.15226435.IPIFunction
GO:0005634nucleus9236775.IDAComponent
GO:0005736RNA polymerase I complex21873635.IBAComponent
GO:0005736RNA polymerase I complex9236775.15226435.IDAComponent
GO:0005736RNA polymerase I complex-ISOComponent
GO:0006351transcription, DNA-templated-IEAProcess
GO:0008270zinc ion binding-IEAFunction
GO:0009303rRNA transcription-ISOProcess
GO:0016740transferase activity-IEAFunction
GO:0016779nucleotidyltransferase activity-IEAFunction
GO:0046872metal ion binding-IEAFunction
GO:1904750negative regulation of protein localization to nucleolus-ISOProcess

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