EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000049717 (Gene tree)
Gene ID
319583
Gene Symbol
Lig4
Alias
5830471N16Rik|DNA ligase IV|tiny
Full Name
ligase IV%2C DNA%2C ATP-dependent
Gene Type
protein_coding
Species
Mus_musculus
Status
putative
Strand
Minus strand
Length
8638 bases
Position
chr8:9969049-9977686
Accession
1335098
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000093130RNA_ligasePF09414.105.7e-0911
ENSMUSP00000130807RNA_ligasePF09414.105.7e-0911
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000170033-3105XM_017312854ENSMUSP00000130807911 (aa)XP_017168343Q8BTF7
ENSMUST00000095476-5028-ENSMUSP00000093130911 (aa)-Q8BTF7
Gene Model
Click here to download ENSMUSG00000049717's gene model file
Pathways
Pathway IDPathway NameSource
mmu03450Non-homologous end-joiningKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000049717's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000049717Lig410087.047ENSG00000174405LIG410087.047Homo_sapiens
ENSMUSG00000049717Lig49964.835ENSAPOG00000000866lig49964.945Acanthochromis_polyacanthus
ENSMUSG00000049717Lig410083.425ENSAMEG00000019685LIG49983.425Ailuropoda_melanoleuca
ENSMUSG00000049717Lig49965.457ENSACIG00000018309lig49965.567Amphilophus_citrinellus
ENSMUSG00000049717Lig49964.505ENSAOCG00000011768lig49964.615Amphiprion_ocellaris
ENSMUSG00000049717Lig49964.725ENSAPEG00000017815lig49964.835Amphiprion_percula
ENSMUSG00000049717Lig49965.198ENSATEG00000005583lig49965.308Anabas_testudineus
ENSMUSG00000049717Lig49773.750ENSAPLG00000001673LIG49973.750Anas_platyrhynchos
ENSMUSG00000049717Lig49974.640ENSACAG00000014566LIG49974.640Anolis_carolinensis
ENSMUSG00000049717Lig410086.937ENSANAG00000012446LIG410086.937Aotus_nancymaae
ENSMUSG00000049717Lig49964.474ENSACLG00000027051lig49964.796Astatotilapia_calliptera
ENSMUSG00000049717Lig49963.567ENSAMXG00000008192lig49463.567Astyanax_mexicanus
ENSMUSG00000049717Lig410085.181ENSBTAG00000015868LIG410085.181Bos_taurus
ENSMUSG00000049717Lig410086.059ENSCJAG00000014689LIG410086.059Callithrix_jacchus
ENSMUSG00000049717Lig410085.291ENSCAFG00000006031LIG410085.291Canis_familiaris
ENSMUSG00000049717Lig410085.291ENSCAFG00020021230LIG410085.291Canis_lupus_dingo
ENSMUSG00000049717Lig410084.632ENSCHIG00000001019LIG410084.632Capra_hircus
ENSMUSG00000049717Lig49985.825ENSCAPG00000006284LIG49985.825Cavia_aperea
ENSMUSG00000049717Lig410085.730ENSCPOG00000014266LIG410085.730Cavia_porcellus
ENSMUSG00000049717Lig410085.950ENSCCAG00000019971LIG410085.950Cebus_capucinus
ENSMUSG00000049717Lig410086.279ENSCATG00000021075LIG410086.279Cercocebus_atys
ENSMUSG00000049717Lig410086.718ENSCLAG00000003376LIG410086.718Chinchilla_lanigera
ENSMUSG00000049717Lig410086.498ENSCSAG00000000211LIG410086.498Chlorocebus_sabaeus
ENSMUSG00000049717Lig49976.269ENSCPBG00000023291LIG410075.817Chrysemys_picta_bellii
ENSMUSG00000049717Lig46945.683ENSCING00000009536-9745.683Ciona_intestinalis
ENSMUSG00000049717Lig48345.729ENSCSAVG00000010336-9845.729Ciona_savignyi
ENSMUSG00000049717Lig410086.608ENSCANG00000005805LIG410086.608Colobus_angolensis_palliatus
ENSMUSG00000049717Lig410092.325ENSCGRG00001012072Lig410092.325Cricetulus_griseus_chok1gshd
ENSMUSG00000049717Lig410092.325ENSCGRG00000013417Lig410092.325Cricetulus_griseus_crigri
ENSMUSG00000049717Lig49765.114ENSCSEG00000013905lig49565.114Cynoglossus_semilaevis
ENSMUSG00000049717Lig49964.784ENSCVAG00000007896lig49964.784Cyprinodon_variegatus
ENSMUSG00000049717Lig49963.415ENSDARG00000060620lig49863.415Danio_rerio
ENSMUSG00000049717Lig410084.539ENSDNOG00000000513LIG410084.539Dasypus_novemcinctus
ENSMUSG00000049717Lig410085.620ENSDORG00000027303Lig410085.620Dipodomys_ordii
ENSMUSG00000049717Lig48931.548FBgn0030506Lig49131.548Drosophila_melanogaster
ENSMUSG00000049717Lig49981.042ENSETEG00000015563LIG410081.153Echinops_telfairi
ENSMUSG00000049717Lig49943.606ENSEBUG00000014243lig49943.606Eptatretus_burgeri
ENSMUSG00000049717Lig410085.840ENSEASG00005022073LIG410085.840Equus_asinus_asinus
ENSMUSG00000049717Lig410085.510ENSECAG00000003257LIG410085.510Equus_caballus
ENSMUSG00000049717Lig49965.491ENSELUG00000006787lig49965.821Esox_lucius
ENSMUSG00000049717Lig410085.071ENSFCAG00000031985LIG410085.071Felis_catus
ENSMUSG00000049717Lig48974.416ENSFALG00000004214LIG49874.416Ficedula_albicollis
ENSMUSG00000049717Lig410085.401ENSFDAG00000008973LIG410085.401Fukomys_damarensis
ENSMUSG00000049717Lig49963.626ENSFHEG00000007398lig49063.626Fundulus_heteroclitus
ENSMUSG00000049717Lig48564.212ENSGMOG00000012843lig49964.212Gadus_morhua
ENSMUSG00000049717Lig410072.926ENSGALG00000016854LIG410072.926Gallus_gallus
ENSMUSG00000049717Lig49964.365ENSGAFG00000019779lig49563.916Gambusia_affinis
ENSMUSG00000049717Lig49963.234ENSGACG00000014135lig49963.234Gasterosteus_aculeatus
ENSMUSG00000049717Lig410086.937ENSGGOG00000027771LIG410086.937Gorilla_gorilla
ENSMUSG00000049717Lig49964.364ENSHBUG00000006245lig49964.686Haplochromis_burtoni
ENSMUSG00000049717Lig410085.291ENSHGLG00000000718LIG410085.291Heterocephalus_glaber_female
ENSMUSG00000049717Lig410085.291ENSHGLG00100003265LIG410085.291Heterocephalus_glaber_male
ENSMUSG00000049717Lig49964.505ENSHCOG00000012010lig49964.505Hippocampus_comes
ENSMUSG00000049717Lig49964.945ENSIPUG00000013748lig49964.945Ictalurus_punctatus
ENSMUSG00000049717Lig410086.169ENSSTOG00000024303LIG410086.169Ictidomys_tridecemlineatus
ENSMUSG00000049717Lig410086.608ENSJJAG00000006750Lig410086.608Jaculus_jaculus
ENSMUSG00000049717Lig49964.230ENSKMAG00000001149lig49964.230Kryptolebias_marmoratus
ENSMUSG00000049717Lig49165.542ENSLBEG00000014578lig49965.663Labrus_bergylta
ENSMUSG00000049717Lig49971.350ENSLACG00000003282LIG49971.350Latimeria_chalumnae
ENSMUSG00000049717Lig49970.044ENSLOCG00000008901lig49870.044Lepisosteus_oculatus
ENSMUSG00000049717Lig410082.804ENSLAFG00000031152LIG410082.804Loxodonta_africana
ENSMUSG00000049717Lig410086.389ENSMFAG00000037235LIG410086.389Macaca_fascicularis
ENSMUSG00000049717Lig410086.389ENSMMUG00000008874LIG410086.389Macaca_mulatta
ENSMUSG00000049717Lig410086.389ENSMNEG00000023575LIG410086.389Macaca_nemestrina
ENSMUSG00000049717Lig410086.389ENSMLEG00000026720LIG410086.389Mandrillus_leucophaeus
ENSMUSG00000049717Lig49965.275ENSMAMG00000008472lig49965.385Mastacembelus_armatus
ENSMUSG00000049717Lig49964.474ENSMZEG00005001855lig49964.686Maylandia_zebra
ENSMUSG00000049717Lig410072.926ENSMGAG00000015532LIG410072.926Meleagris_gallopavo
ENSMUSG00000049717Lig410089.352ENSMOCG00000019000Lig410089.352Microtus_ochrogaster
ENSMUSG00000049717Lig49964.009ENSMMOG00000004390lig49964.120Mola_mola
ENSMUSG00000049717Lig410080.461ENSMODG00000025064LIG410080.921Monodelphis_domestica
ENSMUSG00000049717Lig49964.452ENSMALG00000008555lig49964.452Monopterus_albus
ENSMUSG00000049717Lig410098.024MGP_CAROLIEiJ_G0030809Lig410098.024Mus_caroli
ENSMUSG00000049717Lig410097.475MGP_PahariEiJ_G0021270Lig410097.475Mus_pahari
ENSMUSG00000049717Lig410098.573MGP_SPRETEiJ_G0031917Lig410098.573Mus_spretus
ENSMUSG00000049717Lig410084.083ENSMPUG00000018675LIG410084.083Mustela_putorius_furo
ENSMUSG00000049717Lig410085.730ENSMLUG00000001267LIG410085.730Myotis_lucifugus
ENSMUSG00000049717Lig410088.694ENSNGAG00000013258Lig410088.694Nannospalax_galili
ENSMUSG00000049717Lig49964.693ENSNBRG00000021252lig49965.017Neolamprologus_brichardi
ENSMUSG00000049717Lig410086.389ENSNLEG00000007888LIG410086.389Nomascus_leucogenys
ENSMUSG00000049717Lig410084.632ENSOPRG00000005765LIG410084.632Ochotona_princeps
ENSMUSG00000049717Lig410084.852ENSODEG00000019683LIG410084.852Octodon_degus
ENSMUSG00000049717Lig49964.583ENSONIG00000011969lig49864.796Oreochromis_niloticus
ENSMUSG00000049717Lig410086.279ENSOCUG00000015734LIG410086.279Oryctolagus_cuniculus
ENSMUSG00000049717Lig49963.377ENSORLG00000004041lig49963.596Oryzias_latipes
ENSMUSG00000049717Lig49963.816ENSORLG00020019607lig49964.035Oryzias_latipes_hni
ENSMUSG00000049717Lig49963.487ENSORLG00015017754lig49963.706Oryzias_latipes_hsok
ENSMUSG00000049717Lig47468.491ENSOMEG00000003459lig49868.491Oryzias_melastigma
ENSMUSG00000049717Lig410085.855ENSOGAG00000032120LIG49985.855Otolemur_garnettii
ENSMUSG00000049717Lig48286.174ENSOARG00000005590LIG49886.174Ovis_aries
ENSMUSG00000049717Lig410086.828ENSPPAG00000032998LIG410086.828Pan_paniscus
ENSMUSG00000049717Lig410085.510ENSPPRG00000017804LIG410085.510Panthera_pardus
ENSMUSG00000049717Lig410085.510ENSPTIG00000010051LIG410085.510Panthera_tigris_altaica
ENSMUSG00000049717Lig410086.937ENSPTRG00000006025LIG410086.937Pan_troglodytes
ENSMUSG00000049717Lig410086.389ENSPANG00000007562LIG410086.389Papio_anubis
ENSMUSG00000049717Lig49965.423ENSPKIG00000011645lig49865.423Paramormyrops_kingsleyae
ENSMUSG00000049717Lig49976.070ENSPSIG00000001504LIG49976.070Pelodiscus_sinensis
ENSMUSG00000049717Lig49961.889ENSPMGG00000013486lig49961.690Periophthalmus_magnuspinnatus
ENSMUSG00000049717Lig410091.338ENSPEMG00000000076Lig410091.338Peromyscus_maniculatus_bairdii
ENSMUSG00000049717Lig410081.360ENSPCIG00000021882LIG410081.360Phascolarctos_cinereus
ENSMUSG00000049717Lig49964.182ENSPFOG00000000797lig49963.736Poecilia_formosa
ENSMUSG00000049717Lig49964.071ENSPLAG00000001196lig49963.626Poecilia_latipinna
ENSMUSG00000049717Lig49964.182ENSPMEG00000021353lig49963.956Poecilia_mexicana
ENSMUSG00000049717Lig49963.737ENSPREG00000007323lig49963.516Poecilia_reticulata
ENSMUSG00000049717Lig410086.718ENSPPYG00000005540LIG410086.718Pongo_abelii
ENSMUSG00000049717Lig410085.840ENSPVAG00000016403LIG410085.840Pteropus_vampyrus
ENSMUSG00000049717Lig49964.474ENSPNYG00000009660lig49964.686Pundamilia_nyererei
ENSMUSG00000049717Lig410064.145ENSPNAG00000028056lig410064.254Pygocentrus_nattereri
ENSMUSG00000049717Lig410064.145ENSPNAG00000028069LIG410064.254Pygocentrus_nattereri
ENSMUSG00000049717Lig410094.182ENSRNOG00000014605Lig410094.182Rattus_norvegicus
ENSMUSG00000049717Lig410085.291ENSRBIG00000039962LIG410085.291Rhinopithecus_bieti
ENSMUSG00000049717Lig410086.279ENSRROG00000006040LIG410086.279Rhinopithecus_roxellana
ENSMUSG00000049717Lig410086.169ENSSBOG00000019029LIG410086.169Saimiri_boliviensis_boliviensis
ENSMUSG00000049717Lig410078.618ENSSHAG00000009525LIG410078.618Sarcophilus_harrisii
ENSMUSG00000049717Lig410064.520ENSSFOG00015012835lig410064.520Scleropages_formosus
ENSMUSG00000049717Lig49962.348ENSSMAG00000011267lig49962.348Scophthalmus_maximus
ENSMUSG00000049717Lig49965.410ENSSDUG00000010343lig49865.410Seriola_dumerili
ENSMUSG00000049717Lig49963.787ENSSLDG00000003239lig49963.787Seriola_lalandi_dorsalis
ENSMUSG00000049717Lig410080.635ENSSARG00000006573LIG410080.635Sorex_araneus
ENSMUSG00000049717Lig49375.948ENSSPUG00000002444LIG410075.948Sphenodon_punctatus
ENSMUSG00000049717Lig49964.835ENSSPAG00000001609lig49964.945Stegastes_partitus
ENSMUSG00000049717Lig49983.828ENSSSCG00000009540LIG49983.828Sus_scrofa
ENSMUSG00000049717Lig49973.187ENSTGUG00000010795LIG410073.187Taeniopygia_guttata
ENSMUSG00000049717Lig49964.895ENSTRUG00000009984lig49964.895Takifugu_rubripes
ENSMUSG00000049717Lig49964.615ENSTNIG00000010348lig49964.835Tetraodon_nigroviridis
ENSMUSG00000049717Lig410087.157ENSTBEG00000017741LIG410087.157Tupaia_belangeri
ENSMUSG00000049717Lig410085.950ENSTTRG00000012660LIG410085.950Tursiops_truncatus
ENSMUSG00000049717Lig410083.644ENSUAMG00000003773LIG410083.644Ursus_americanus
ENSMUSG00000049717Lig49970.110ENSXETG00000002654lig49970.110Xenopus_tropicalis
ENSMUSG00000049717Lig49963.960ENSXCOG00000017401lig49963.516Xiphophorus_couchianus
ENSMUSG00000049717Lig49964.333ENSXMAG00000015142lig49963.886Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000012single strand break repair-ISOProcess
GO:0000166nucleotide binding-IEAFunction
GO:0000793condensed chromosome-ISOComponent
GO:0001701in utero embryonic development9823897.10911993.16777961.IMPProcess
GO:0002328pro-B cell differentiation9823897.10911993.IMPProcess
GO:0003677DNA binding-ISOFunction
GO:0003909DNA ligase activity-ISOFunction
GO:0003910DNA ligase (ATP) activity15194694.IDAFunction
GO:0003910DNA ligase (ATP) activity-ISOFunction
GO:0005515protein binding20620605.IPIFunction
GO:0005524ATP binding15194694.IDAFunction
GO:0005524ATP binding-ISOFunction
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex21873635.IBAComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex15194694.IDAComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex-ISOComponent
GO:0006260DNA replication-IEAProcess
GO:0006266DNA ligation15194694.IDAProcess
GO:0006266DNA ligation15968270.IMPProcess
GO:0006266DNA ligation-ISOProcess
GO:0006281DNA repair11779495.21390131.IMPProcess
GO:0006297nucleotide-excision repair, DNA gap filling21873635.IBAProcess
GO:0006297nucleotide-excision repair, DNA gap filling-ISOProcess
GO:0006302double-strand break repair12531011.15175260.IGIProcess
GO:0006302double-strand break repair12531011.15175260.17554302.IMPProcess
GO:0006302double-strand break repair-ISOProcess
GO:0006303double-strand break repair via nonhomologous end joining21873635.IBAProcess
GO:0006303double-strand break repair via nonhomologous end joining10823907.12361565.16777961.IMPProcess
GO:0006303double-strand break repair via nonhomologous end joining-ISOProcess
GO:0006310DNA recombination-IEAProcess
GO:0006974cellular response to DNA damage stimulus-IEAProcess
GO:0007049cell cycle-IEAProcess
GO:0007417central nervous system development10911993.IGIProcess
GO:0007417central nervous system development9875844.9889105.IMPProcess
GO:0008022protein C-terminus binding-ISOFunction
GO:0008283cell proliferation15175260.17554302.IMPProcess
GO:0010165response to X-ray-ISOProcess
GO:0010212response to ionizing radiation10823907.21390131.IMPProcess
GO:0010332response to gamma radiation9823897.10911993.IMPProcess
GO:0016874ligase activity-ISOFunction
GO:0032807DNA ligase IV complex21873635.IBAComponent
GO:0032807DNA ligase IV complex-ISOComponent
GO:0033077T cell differentiation in thymus9823897.10911993.IMPProcess
GO:0033151V(D)J recombination15194694.IDAProcess
GO:0033151V(D)J recombination10716994.IMPProcess
GO:0033151V(D)J recombination-ISOProcess
GO:0033152immunoglobulin V(D)J recombination21873635.IBAProcess
GO:0033152immunoglobulin V(D)J recombination9823897.IMPProcess
GO:0033153T cell receptor V(D)J recombination10911993.IMPProcess
GO:0035019somatic stem cell population maintenance17554302.IMPProcess
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0043524negative regulation of neuron apoptotic process10911993.16777961.IGIProcess
GO:0043524negative regulation of neuron apoptotic process9875844.IMPProcess
GO:0045190isotype switching17713479.IMPProcess
GO:0046872metal ion binding-IEAFunction
GO:0048146positive regulation of fibroblast proliferation9823897.10911993.IMPProcess
GO:0050769positive regulation of neurogenesis9875844.10716994.16777961.IMPProcess
GO:0051102DNA ligation involved in DNA recombination9823897.IMPProcess
GO:0051103DNA ligation involved in DNA repair9823897.IMPProcess
GO:0051103DNA ligation involved in DNA repair-ISOProcess
GO:0051276chromosome organization15175260.IGIProcess
GO:0051301cell division-IEAProcess
GO:0051402neuron apoptotic process11248063.IGIProcess
GO:0070419nonhomologous end joining complex-ISOComponent
GO:0071479cellular response to ionizing radiation-ISOProcess
GO:0071897DNA biosynthetic process-IEAProcess
GO:0097680double-strand break repair via classical nonhomologous end joining-ISOProcess
GO:2001252positive regulation of chromosome organization-ISOProcess

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