EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000049950 (Gene tree)
Gene ID: 227522
Gene Symbol: Rpp38
Alias: C330006A15Rik
Full Name: ribonuclease P/MRP 38 subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 3695 bases
Position: chr2:3328949-3332643
Accession: 2443607
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000050992	Ribosomal_L7Ae	PF01248.26	1.2e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000062672	-	1042	XM_006497450	ENSMUSP00000050992	280 (aa)	XP_006497513	A2AJG0

Gene Model

Click here to download ENSMUSG00000049950's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000049950's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000049950	Rpp38	100	75.789	ENSG00000152464	RPP38	100	76.190	Homo_sapiens
ENSMUSG00000049950	Rpp38	94	44.853	ENSAPOG00000001240	rpp38	96	44.565	Acanthochromis_polyacanthus
ENSMUSG00000049950	Rpp38	100	72.183	ENSAMEG00000018832	RPP38	100	72.632	Ailuropoda_melanoleuca
ENSMUSG00000049950	Rpp38	88	44.444	ENSACIG00000011592	rpp38	92	44.195	Amphilophus_citrinellus
ENSMUSG00000049950	Rpp38	94	43.554	ENSAOCG00000017293	rpp38	97	43.299	Amphiprion_ocellaris
ENSMUSG00000049950	Rpp38	94	45.421	ENSAPEG00000002315	rpp38	96	45.126	Amphiprion_percula
ENSMUSG00000049950	Rpp38	96	45.818	ENSATEG00000000731	rpp38	98	45.818	Anabas_testudineus
ENSMUSG00000049950	Rpp38	91	48.450	ENSAPLG00000002054	RPP38	96	49.259	Anas_platyrhynchos
ENSMUSG00000049950	Rpp38	94	43.015	ENSACLG00000016958	rpp38	97	42.806	Astatotilapia_calliptera
ENSMUSG00000049950	Rpp38	94	42.647	ENSACLG00000016962	rpp38	97	42.446	Astatotilapia_calliptera
ENSMUSG00000049950	Rpp38	89	41.667	ENSAMXG00000025023	rpp38	94	42.857	Astyanax_mexicanus
ENSMUSG00000049950	Rpp38	100	68.421	ENSBTAG00000007702	RPP38	100	68.421	Bos_taurus
ENSMUSG00000049950	Rpp38	100	71.127	ENSCAFG00000024373	RPP38	100	71.579	Canis_familiaris
ENSMUSG00000049950	Rpp38	100	71.127	ENSCAFG00020008008	RPP38	100	71.579	Canis_lupus_dingo
ENSMUSG00000049950	Rpp38	100	67.719	ENSCHIG00000012484	RPP38	100	67.719	Capra_hircus
ENSMUSG00000049950	Rpp38	100	72.281	ENSCPOG00000003981	RPP38	100	72.281	Cavia_porcellus
ENSMUSG00000049950	Rpp38	100	75.789	ENSCLAG00000010194	RPP38	100	75.789	Chinchilla_lanigera
ENSMUSG00000049950	Rpp38	94	76.316	ENSCSAG00000019055	RPP38	100	76.056	Chlorocebus_sabaeus
ENSMUSG00000049950	Rpp38	100	77.193	ENSCHOG00000004335	RPP38	100	77.193	Choloepus_hoffmanni
ENSMUSG00000049950	Rpp38	100	83.986	ENSCGRG00001001395	Rpp38	100	85.053	Cricetulus_griseus_chok1gshd
ENSMUSG00000049950	Rpp38	100	83.986	ENSCGRG00000017441	Rpp38	100	85.053	Cricetulus_griseus_crigri
ENSMUSG00000049950	Rpp38	94	42.806	ENSCSEG00000001721	rpp38	99	42.361	Cynoglossus_semilaevis
ENSMUSG00000049950	Rpp38	95	44.043	ENSCVAG00000001676	rpp38	97	42.414	Cyprinodon_variegatus
ENSMUSG00000049950	Rpp38	90	47.710	ENSDARG00000040350	rpp38	95	46.886	Danio_rerio
ENSMUSG00000049950	Rpp38	100	73.944	ENSDNOG00000040314	RPP38	100	73.944	Dasypus_novemcinctus
ENSMUSG00000049950	Rpp38	100	66.548	ENSDORG00000009783	Rpp38	100	66.548	Dipodomys_ordii
ENSMUSG00000049950	Rpp38	100	71.378	ENSETEG00000002839	RPP38	100	71.378	Echinops_telfairi
ENSMUSG00000049950	Rpp38	99	72.340	ENSEASG00005019783	RPP38	98	72.340	Equus_asinus_asinus
ENSMUSG00000049950	Rpp38	99	67.491	ENSEEUG00000014677	RPP38	99	67.491	Erinaceus_europaeus
ENSMUSG00000049950	Rpp38	88	42.647	ENSELUG00000010160	rpp38	94	43.262	Esox_lucius
ENSMUSG00000049950	Rpp38	100	70.070	ENSFCAG00000022449	RPP38	100	70.070	Felis_catus
ENSMUSG00000049950	Rpp38	91	50.584	ENSFALG00000014804	RPP38	93	51.301	Ficedula_albicollis
ENSMUSG00000049950	Rpp38	100	74.386	ENSFDAG00000018669	RPP38	100	74.386	Fukomys_damarensis
ENSMUSG00000049950	Rpp38	95	42.553	ENSFHEG00000013741	rpp38	97	42.657	Fundulus_heteroclitus
ENSMUSG00000049950	Rpp38	91	50.000	ENSGALG00000008794	RPP38	91	50.554	Gallus_gallus
ENSMUSG00000049950	Rpp38	57	49.375	ENSGACG00000009258	rpp38	97	48.125	Gasterosteus_aculeatus
ENSMUSG00000049950	Rpp38	94	43.015	ENSHBUG00000010937	rpp38	97	43.165	Haplochromis_burtoni
ENSMUSG00000049950	Rpp38	100	72.281	ENSHGLG00000012144	RPP38	100	72.281	Heterocephalus_glaber_female
ENSMUSG00000049950	Rpp38	88	42.915	ENSIPUG00000022879	rpp38	95	41.509	Ictalurus_punctatus
ENSMUSG00000049950	Rpp38	100	72.982	ENSSTOG00000025699	RPP38	98	72.982	Ictidomys_tridecemlineatus
ENSMUSG00000049950	Rpp38	100	79.649	ENSJJAG00000007523	Rpp38	100	78.947	Jaculus_jaculus
ENSMUSG00000049950	Rpp38	88	42.803	ENSKMAG00000003986	rpp38	89	42.697	Kryptolebias_marmoratus
ENSMUSG00000049950	Rpp38	96	45.230	ENSLBEG00000006853	rpp38	98	44.876	Labrus_bergylta
ENSMUSG00000049950	Rpp38	95	53.214	ENSLACG00000006502	RPP38	100	53.220	Latimeria_chalumnae
ENSMUSG00000049950	Rpp38	93	47.445	ENSLOCG00000018347	rpp38	93	47.826	Lepisosteus_oculatus
ENSMUSG00000049950	Rpp38	100	74.296	ENSLAFG00000000509	RPP38	100	74.296	Loxodonta_africana
ENSMUSG00000049950	Rpp38	94	77.820	ENSMMUG00000007679	RPP38	100	77.465	Macaca_mulatta
ENSMUSG00000049950	Rpp38	96	43.416	ENSMAMG00000012774	rpp38	96	44.161	Mastacembelus_armatus
ENSMUSG00000049950	Rpp38	94	43.015	ENSMZEG00005003200	rpp38	97	42.806	Maylandia_zebra
ENSMUSG00000049950	Rpp38	94	43.015	ENSMZEG00005003189	rpp38	97	43.165	Maylandia_zebra
ENSMUSG00000049950	Rpp38	91	48.276	ENSMGAG00000008217	RPP38	91	49.077	Meleagris_gallopavo
ENSMUSG00000049950	Rpp38	100	84.342	ENSMAUG00000003644	Rpp38	100	84.342	Mesocricetus_auratus
ENSMUSG00000049950	Rpp38	100	85.461	ENSMOCG00000007020	Rpp38	100	84.752	Microtus_ochrogaster
ENSMUSG00000049950	Rpp38	94	42.806	ENSMMOG00000003446	rpp38	96	42.086	Mola_mola
ENSMUSG00000049950	Rpp38	95	62.825	ENSMODG00000024091	RPP38	100	62.544	Monodelphis_domestica
ENSMUSG00000049950	Rpp38	91	42.491	ENSMALG00000002356	rpp38	93	42.491	Monopterus_albus
ENSMUSG00000049950	Rpp38	100	97.500	MGP_CAROLIEiJ_G0023133	Rpp38	100	97.500	Mus_caroli
ENSMUSG00000049950	Rpp38	100	95.357	MGP_PahariEiJ_G0019193	Rpp38	100	95.357	Mus_pahari
ENSMUSG00000049950	Rpp38	100	98.571	MGP_SPRETEiJ_G0024051	Rpp38	100	98.571	Mus_spretus
ENSMUSG00000049950	Rpp38	99	70.463	ENSMPUG00000018523	RPP38	99	70.922	Mustela_putorius_furo
ENSMUSG00000049950	Rpp38	94	74.906	ENSMLUG00000002153	RPP38	100	74.648	Myotis_lucifugus
ENSMUSG00000049950	Rpp38	100	78.947	ENSNGAG00000011066	Rpp38	100	78.947	Nannospalax_galili
ENSMUSG00000049950	Rpp38	94	43.284	ENSNBRG00000006994	rpp38	98	42.652	Neolamprologus_brichardi
ENSMUSG00000049950	Rpp38	94	43.590	ENSONIG00000020467	rpp38	96	43.066	Oreochromis_niloticus
ENSMUSG00000049950	Rpp38	94	71.053	ENSOCUG00000022768	-	100	71.479	Oryctolagus_cuniculus
ENSMUSG00000049950	Rpp38	94	71.053	ENSOCUG00000024367	-	100	71.479	Oryctolagus_cuniculus
ENSMUSG00000049950	Rpp38	90	42.146	ENSORLG00000009219	rpp38	96	42.491	Oryzias_latipes
ENSMUSG00000049950	Rpp38	88	42.063	ENSORLG00020011503	rpp38	90	41.791	Oryzias_latipes_hni
ENSMUSG00000049950	Rpp38	93	41.264	ENSORLG00015017702	rpp38	94	42.199	Oryzias_latipes_hsok
ENSMUSG00000049950	Rpp38	88	45.802	ENSOMEG00000005414	rpp38	99	44.948	Oryzias_melastigma
ENSMUSG00000049950	Rpp38	100	75.704	ENSOGAG00000008059	RPP38	100	75.704	Otolemur_garnettii
ENSMUSG00000049950	Rpp38	100	68.421	ENSOARG00000004534	RPP38	100	68.421	Ovis_aries
ENSMUSG00000049950	Rpp38	100	75.789	ENSPPAG00000041577	RPP38	91	75.789	Pan_paniscus
ENSMUSG00000049950	Rpp38	100	70.423	ENSPPRG00000015329	RPP38	100	70.423	Panthera_pardus
ENSMUSG00000049950	Rpp38	100	70.070	ENSPTIG00000007188	RPP38	100	70.423	Panthera_tigris_altaica
ENSMUSG00000049950	Rpp38	100	75.789	ENSPTRG00000002318	RPP38	91	75.789	Pan_troglodytes
ENSMUSG00000049950	Rpp38	94	44.565	ENSPKIG00000025652	rpp38	95	44.444	Paramormyrops_kingsleyae
ENSMUSG00000049950	Rpp38	96	54.015	ENSPSIG00000001527	RPP38	97	54.015	Pelodiscus_sinensis
ENSMUSG00000049950	Rpp38	100	86.833	ENSPEMG00000008375	Rpp38	100	87.544	Peromyscus_maniculatus_bairdii
ENSMUSG00000049950	Rpp38	100	65.018	ENSPCIG00000009096	RPP38	94	65.018	Phascolarctos_cinereus
ENSMUSG00000049950	Rpp38	62	47.253	ENSPFOG00000016823	rpp38	82	47.253	Poecilia_formosa
ENSMUSG00000049950	Rpp38	89	41.762	ENSPLAG00000007626	rpp38	91	41.762	Poecilia_latipinna
ENSMUSG00000049950	Rpp38	88	38.189	ENSPMEG00000020392	rpp38	93	38.258	Poecilia_mexicana
ENSMUSG00000049950	Rpp38	89	41.065	ENSPREG00000017744	rpp38	93	40.684	Poecilia_reticulata
ENSMUSG00000049950	Rpp38	100	76.491	ENSPPYG00000002113	RPP38	100	76.491	Pongo_abelii
ENSMUSG00000049950	Rpp38	94	72.659	ENSPVAG00000007155	RPP38	100	72.982	Pteropus_vampyrus
ENSMUSG00000049950	Rpp38	94	43.015	ENSPNYG00000004293	rpp38	97	43.165	Pundamilia_nyererei
ENSMUSG00000049950	Rpp38	88	43.600	ENSPNAG00000010633	rpp38	100	42.958	Pygocentrus_nattereri
ENSMUSG00000049950	Rpp38	98	86.182	ENSRNOG00000038025	Rpp38	99	85.507	Rattus_norvegicus
ENSMUSG00000049950	Rpp38	100	65.724	ENSSHAG00000015529	RPP38	100	65.724	Sarcophilus_harrisii
ENSMUSG00000049950	Rpp38	94	42.446	ENSSMAG00000018276	rpp38	95	43.333	Scophthalmus_maximus
ENSMUSG00000049950	Rpp38	94	44.404	ENSSDUG00000001651	rpp38	98	43.416	Seriola_dumerili
ENSMUSG00000049950	Rpp38	94	44.404	ENSSLDG00000014355	rpp38	98	43.772	Seriola_lalandi_dorsalis
ENSMUSG00000049950	Rpp38	100	55.000	ENSSARG00000012099	RPP38	100	55.000	Sorex_araneus
ENSMUSG00000049950	Rpp38	99	55.124	ENSSPUG00000018363	-	99	55.124	Sphenodon_punctatus
ENSMUSG00000049950	Rpp38	100	55.439	ENSSPUG00000005237	-	100	55.439	Sphenodon_punctatus
ENSMUSG00000049950	Rpp38	97	51.449	ENSSPUG00000008560	-	99	51.449	Sphenodon_punctatus
ENSMUSG00000049950	Rpp38	94	42.857	ENSSPAG00000020387	rpp38	99	41.844	Stegastes_partitus
ENSMUSG00000049950	Rpp38	100	67.361	ENSSSCG00000027110	RPP38	100	67.361	Sus_scrofa
ENSMUSG00000049950	Rpp38	91	50.775	ENSTGUG00000001366	RPP38	96	50.741	Taeniopygia_guttata
ENSMUSG00000049950	Rpp38	95	41.844	ENSTNIG00000001334	rpp38	97	41.489	Tetraodon_nigroviridis
ENSMUSG00000049950	Rpp38	100	68.421	ENSTTRG00000004420	RPP38	100	68.421	Tursiops_truncatus
ENSMUSG00000049950	Rpp38	100	72.535	ENSUAMG00000002618	RPP38	100	72.982	Ursus_americanus
ENSMUSG00000049950	Rpp38	100	71.678	ENSUMAG00000012382	RPP38	100	72.727	Ursus_maritimus
ENSMUSG00000049950	Rpp38	100	70.423	ENSVVUG00000005272	RPP38	100	70.877	Vulpes_vulpes
ENSMUSG00000049950	Rpp38	92	45.956	ENSXETG00000003419	rpp38	97	46.619	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	ISO	Component
GO:0001682	tRNA 5'-leader removal	-	ISO	Process
GO:0004526	ribonuclease P activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030681	multimeric ribonuclease P complex	-	ISO	Component