EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000050188 (Gene tree)
Gene ID: 116748
Gene Symbol: Lsm10
Alias: -
Full Name: U7 snRNP-specific Sm-like protein LSM10
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 1962 bases
Position: chr4:126096623-126098584
Accession: 2151045
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000119610	LSM	PF01423.22	6.3e-13	1	1
ENSMUSP00000061913	LSM	PF01423.22	1.2e-12	1	1
ENSMUSP00000136585	LSM	PF01423.22	1.2e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000055575	-	943	XM_006502686	ENSMUSP00000061913	122 (aa)	XP_006502749	Q8QZX5
ENSMUST00000151831	-	352	-	ENSMUSP00000119610	93 (aa)	-	A8Y5G9
ENSMUST00000179323	-	808	-	ENSMUSP00000136585	122 (aa)	-	Q8QZX5

Gene Model

Click here to download ENSMUSG00000050188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000050188's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000050188	Lsm10	75	31.507	ENSMUSG00000007050	Lsm2	77	31.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000050188	Lsm10	100	90.323	ENSG00000181817	LSM10	98	90.833	Homo_sapiens
ENSMUSG00000050188	Lsm10	100	93.548	ENSAMEG00000019854	LSM10	98	90.909	Ailuropoda_melanoleuca
ENSMUSG00000050188	Lsm10	97	66.949	ENSACIG00000015420	oscp1a	78	66.949	Amphilophus_citrinellus
ENSMUSG00000050188	Lsm10	98	69.231	ENSAOCG00000015607	LSM10	86	66.667	Amphiprion_ocellaris
ENSMUSG00000050188	Lsm10	95	71.591	ENSAOCG00000015618	LSM10	95	69.565	Amphiprion_ocellaris
ENSMUSG00000050188	Lsm10	95	71.591	ENSAOCG00000014654	-	95	69.565	Amphiprion_ocellaris
ENSMUSG00000050188	Lsm10	95	71.591	ENSAPEG00000021845	-	95	69.565	Amphiprion_percula
ENSMUSG00000050188	Lsm10	98	69.231	ENSAPEG00000021851	LSM10	86	66.667	Amphiprion_percula
ENSMUSG00000050188	Lsm10	96	65.169	ENSATEG00000006310	oscp1a	83	63.393	Anabas_testudineus
ENSMUSG00000050188	Lsm10	99	70.652	ENSACAG00000001231	LSM10	95	69.231	Anolis_carolinensis
ENSMUSG00000050188	Lsm10	100	89.247	ENSANAG00000031489	-	98	90.000	Aotus_nancymaae
ENSMUSG00000050188	Lsm10	100	90.323	ENSANAG00000018759	-	98	91.667	Aotus_nancymaae
ENSMUSG00000050188	Lsm10	96	67.416	ENSACLG00000004728	oscp1a	94	67.241	Astatotilapia_calliptera
ENSMUSG00000050188	Lsm10	97	71.111	ENSAMXG00000025301	oscp1a	98	67.227	Astyanax_mexicanus
ENSMUSG00000050188	Lsm10	100	92.473	ENSBTAG00000024096	LSM10	98	90.833	Bos_taurus
ENSMUSG00000050188	Lsm10	100	89.247	ENSCJAG00000044880	LSM10	98	90.833	Callithrix_jacchus
ENSMUSG00000050188	Lsm10	100	95.699	ENSCAFG00000003382	LSM10	98	94.215	Canis_familiaris
ENSMUSG00000050188	Lsm10	100	95.699	ENSCAFG00020008920	LSM10	98	94.215	Canis_lupus_dingo
ENSMUSG00000050188	Lsm10	100	92.473	ENSCHIG00000009398	LSM10	98	90.833	Capra_hircus
ENSMUSG00000050188	Lsm10	100	91.398	ENSCAPG00000012567	LSM10	98	90.083	Cavia_aperea
ENSMUSG00000050188	Lsm10	100	91.398	ENSCPOG00000039302	LSM10	98	90.083	Cavia_porcellus
ENSMUSG00000050188	Lsm10	100	90.323	ENSCCAG00000018913	-	98	91.667	Cebus_capucinus
ENSMUSG00000050188	Lsm10	100	90.323	ENSCCAG00000008378	-	98	90.000	Cebus_capucinus
ENSMUSG00000050188	Lsm10	100	91.398	ENSCATG00000006589	LSM10	98	92.500	Cercocebus_atys
ENSMUSG00000050188	Lsm10	100	93.548	ENSCLAG00000008633	LSM10	98	91.736	Chinchilla_lanigera
ENSMUSG00000050188	Lsm10	100	91.398	ENSCSAG00000000134	LSM10	98	92.500	Chlorocebus_sabaeus
ENSMUSG00000050188	Lsm10	100	91.398	ENSCHOG00000008615	LSM10	98	91.057	Choloepus_hoffmanni
ENSMUSG00000050188	Lsm10	94	31.034	ENSCSAVG00000001896	-	87	30.392	Ciona_savignyi
ENSMUSG00000050188	Lsm10	100	91.398	ENSCANG00000019928	LSM10	98	92.500	Colobus_angolensis_palliatus
ENSMUSG00000050188	Lsm10	100	95.699	ENSCGRG00001004317	-	99	95.868	Cricetulus_griseus_chok1gshd
ENSMUSG00000050188	Lsm10	94	85.470	ENSCGRG00001022673	-	94	85.470	Cricetulus_griseus_chok1gshd
ENSMUSG00000050188	Lsm10	100	95.699	ENSCGRG00000014935	-	99	95.868	Cricetulus_griseus_crigri
ENSMUSG00000050188	Lsm10	94	85.470	ENSCGRG00000015514	-	94	85.470	Cricetulus_griseus_crigri
ENSMUSG00000050188	Lsm10	96	65.169	ENSCSEG00000010374	oscp1a	77	64.348	Cynoglossus_semilaevis
ENSMUSG00000050188	Lsm10	99	69.565	ENSCVAG00000001536	oscp1a	90	65.546	Cyprinodon_variegatus
ENSMUSG00000050188	Lsm10	91	70.588	ENSDARG00000109563	CABZ01074453.1	99	70.588	Danio_rerio
ENSMUSG00000050188	Lsm10	100	72.043	ENSDARG00000101222	oscp1a	100	69.421	Danio_rerio
ENSMUSG00000050188	Lsm10	100	93.548	ENSDNOG00000036662	LSM10	98	94.167	Dasypus_novemcinctus
ENSMUSG00000050188	Lsm10	100	94.624	ENSDORG00000007579	Lsm10	98	93.388	Dipodomys_ordii
ENSMUSG00000050188	Lsm10	95	30.769	FBgn0033554	Lsm10	82	30.769	Drosophila_melanogaster
ENSMUSG00000050188	Lsm10	100	96.774	ENSETEG00000005703	LSM10	98	90.909	Echinops_telfairi
ENSMUSG00000050188	Lsm10	98	56.044	ENSEBUG00000001312	oscp1a	100	48.361	Eptatretus_burgeri
ENSMUSG00000050188	Lsm10	100	94.624	ENSEASG00005012194	LSM10	98	94.215	Equus_asinus_asinus
ENSMUSG00000050188	Lsm10	100	95.699	ENSECAG00000005071	LSM10	98	95.041	Equus_caballus
ENSMUSG00000050188	Lsm10	100	93.548	ENSEEUG00000012032	LSM10	98	92.562	Erinaceus_europaeus
ENSMUSG00000050188	Lsm10	100	70.968	ENSELUG00000007452	oscp1a	99	66.942	Esox_lucius
ENSMUSG00000050188	Lsm10	100	73.118	ENSFALG00000000851	LSM10	95	72.650	Ficedula_albicollis
ENSMUSG00000050188	Lsm10	100	90.323	ENSFDAG00000021056	LSM10	98	88.430	Fukomys_damarensis
ENSMUSG00000050188	Lsm10	90	71.429	ENSFHEG00000001058	oscp1a	95	68.182	Fundulus_heteroclitus
ENSMUSG00000050188	Lsm10	97	68.889	ENSGMOG00000019832	oscp1a	89	66.981	Gadus_morhua
ENSMUSG00000050188	Lsm10	100	75.269	ENSGALG00000002127	LSM10	98	73.554	Gallus_gallus
ENSMUSG00000050188	Lsm10	98	59.574	ENSGAFG00000016445	oscp1a	96	60.000	Gambusia_affinis
ENSMUSG00000050188	Lsm10	96	68.539	ENSGACG00000002329	oscp1a	95	64.655	Gasterosteus_aculeatus
ENSMUSG00000050188	Lsm10	100	78.495	ENSGAGG00000024848	LSM10	98	74.380	Gopherus_agassizii
ENSMUSG00000050188	Lsm10	100	91.398	ENSGGOG00000003556	LSM10	98	92.500	Gorilla_gorilla
ENSMUSG00000050188	Lsm10	96	67.416	ENSHBUG00000001722	oscp1a	94	67.241	Haplochromis_burtoni
ENSMUSG00000050188	Lsm10	100	90.323	ENSHGLG00000011625	LSM10	98	89.256	Heterocephalus_glaber_female
ENSMUSG00000050188	Lsm10	100	90.323	ENSHGLG00100001769	LSM10	98	89.256	Heterocephalus_glaber_male
ENSMUSG00000050188	Lsm10	97	71.111	ENSIPUG00000005808	oscp1a	91	69.524	Ictalurus_punctatus
ENSMUSG00000050188	Lsm10	100	95.699	ENSSTOG00000000606	LSM10	98	93.388	Ictidomys_tridecemlineatus
ENSMUSG00000050188	Lsm10	96	67.416	ENSKMAG00000012143	oscp1a	96	64.655	Kryptolebias_marmoratus
ENSMUSG00000050188	Lsm10	100	64.516	ENSLBEG00000017764	oscp1a	98	64.167	Labrus_bergylta
ENSMUSG00000050188	Lsm10	100	73.118	ENSLACG00000015904	LSM10	93	71.901	Latimeria_chalumnae
ENSMUSG00000050188	Lsm10	100	69.892	ENSLOCG00000018277	oscp1a	98	69.167	Lepisosteus_oculatus
ENSMUSG00000050188	Lsm10	100	96.774	ENSLAFG00000009600	LSM10	98	95.000	Loxodonta_africana
ENSMUSG00000050188	Lsm10	100	91.398	ENSMFAG00000009115	LSM10	98	92.500	Macaca_fascicularis
ENSMUSG00000050188	Lsm10	100	91.398	ENSMMUG00000017338	LSM10	98	92.500	Macaca_mulatta
ENSMUSG00000050188	Lsm10	100	91.398	ENSMNEG00000020023	LSM10	98	92.500	Macaca_nemestrina
ENSMUSG00000050188	Lsm10	100	91.398	ENSMLEG00000025150	LSM10	98	92.500	Mandrillus_leucophaeus
ENSMUSG00000050188	Lsm10	100	67.742	ENSMAMG00000004427	oscp1a	98	64.167	Mastacembelus_armatus
ENSMUSG00000050188	Lsm10	96	67.416	ENSMZEG00005026307	oscp1a	94	67.241	Maylandia_zebra
ENSMUSG00000050188	Lsm10	100	74.194	ENSMGAG00000015707	LSM10	98	72.727	Meleagris_gallopavo
ENSMUSG00000050188	Lsm10	99	95.041	ENSMAUG00000016624	Lsm10	99	95.041	Mesocricetus_auratus
ENSMUSG00000050188	Lsm10	99	95.868	ENSMOCG00000021943	Lsm10	99	95.868	Microtus_ochrogaster
ENSMUSG00000050188	Lsm10	95	69.318	ENSMMOG00000013597	oscp1a	88	66.102	Mola_mola
ENSMUSG00000050188	Lsm10	100	84.946	ENSMODG00000023328	LSM10	98	82.645	Monodelphis_domestica
ENSMUSG00000050188	Lsm10	74	58.108	ENSMALG00000012661	oscp1a	58	58.108	Monopterus_albus
ENSMUSG00000050188	Lsm10	100	99.180	MGP_CAROLIEiJ_G0026467	Lsm10	100	99.180	Mus_caroli
ENSMUSG00000050188	Lsm10	100	100.000	MGP_PahariEiJ_G0028798	Lsm10	100	100.000	Mus_pahari
ENSMUSG00000050188	Lsm10	100	100.000	MGP_SPRETEiJ_G0027446	Lsm10	100	100.000	Mus_spretus
ENSMUSG00000050188	Lsm10	100	95.699	ENSMPUG00000018593	LSM10	98	94.215	Mustela_putorius_furo
ENSMUSG00000050188	Lsm10	100	89.247	ENSMLUG00000023895	LSM10	98	88.430	Myotis_lucifugus
ENSMUSG00000050188	Lsm10	100	96.774	ENSNGAG00000015011	Lsm10	98	95.868	Nannospalax_galili
ENSMUSG00000050188	Lsm10	96	68.539	ENSNBRG00000014306	oscp1a	94	68.103	Neolamprologus_brichardi
ENSMUSG00000050188	Lsm10	100	91.398	ENSNLEG00000033754	LSM10	98	92.500	Nomascus_leucogenys
ENSMUSG00000050188	Lsm10	100	84.946	ENSMEUG00000006313	LSM10	98	82.645	Notamacropus_eugenii
ENSMUSG00000050188	Lsm10	100	92.473	ENSOPRG00000001699	LSM10	98	90.909	Ochotona_princeps
ENSMUSG00000050188	Lsm10	100	93.548	ENSODEG00000019161	LSM10	98	91.736	Octodon_degus
ENSMUSG00000050188	Lsm10	96	68.539	ENSONIG00000020904	oscp1a	95	68.103	Oreochromis_niloticus
ENSMUSG00000050188	Lsm10	100	80.645	ENSOANG00000002066	LSM10	99	77.049	Ornithorhynchus_anatinus
ENSMUSG00000050188	Lsm10	100	90.323	ENSOCUG00000005333	LSM10	98	89.256	Oryctolagus_cuniculus
ENSMUSG00000050188	Lsm10	96	68.539	ENSORLG00000009504	oscp1a	98	65.254	Oryzias_latipes
ENSMUSG00000050188	Lsm10	96	68.539	ENSORLG00020016201	oscp1a	98	65.254	Oryzias_latipes_hni
ENSMUSG00000050188	Lsm10	96	67.416	ENSORLG00015007794	oscp1a	97	63.559	Oryzias_latipes_hsok
ENSMUSG00000050188	Lsm10	100	94.624	ENSOGAG00000002653	LSM10	98	91.736	Otolemur_garnettii
ENSMUSG00000050188	Lsm10	100	92.473	ENSOARG00000009596	LSM10	98	90.833	Ovis_aries
ENSMUSG00000050188	Lsm10	100	90.323	ENSPPAG00000023465	LSM10	98	90.833	Pan_paniscus
ENSMUSG00000050188	Lsm10	100	94.624	ENSPPRG00000014619	LSM10	98	94.215	Panthera_pardus
ENSMUSG00000050188	Lsm10	100	94.624	ENSPTIG00000004613	LSM10	98	94.215	Panthera_tigris_altaica
ENSMUSG00000050188	Lsm10	100	90.323	ENSPTRG00000000539	LSM10	98	90.833	Pan_troglodytes
ENSMUSG00000050188	Lsm10	100	91.398	ENSPANG00000023172	LSM10	98	92.500	Papio_anubis
ENSMUSG00000050188	Lsm10	100	67.742	ENSPKIG00000003728	oscp1a	98	64.754	Paramormyrops_kingsleyae
ENSMUSG00000050188	Lsm10	100	78.495	ENSPSIG00000000590	LSM10	98	73.554	Pelodiscus_sinensis
ENSMUSG00000050188	Lsm10	82	63.158	ENSPMGG00000015718	oscp1a	99	63.158	Periophthalmus_magnuspinnatus
ENSMUSG00000050188	Lsm10	100	83.871	ENSPCIG00000014865	LSM10	76	84.466	Phascolarctos_cinereus
ENSMUSG00000050188	Lsm10	95	69.318	ENSPFOG00000020490	oscp1a	95	67.857	Poecilia_formosa
ENSMUSG00000050188	Lsm10	95	69.318	ENSPLAG00000016537	oscp1a	85	67.857	Poecilia_latipinna
ENSMUSG00000050188	Lsm10	90	70.238	ENSPMEG00000000174	oscp1a	94	68.519	Poecilia_mexicana
ENSMUSG00000050188	Lsm10	95	68.182	ENSPREG00000009899	oscp1a	85	66.964	Poecilia_reticulata
ENSMUSG00000050188	Lsm10	100	90.323	ENSPPYG00000001539	LSM10	98	91.667	Pongo_abelii
ENSMUSG00000050188	Lsm10	100	94.624	ENSPCAG00000002520	LSM10	97	92.373	Procavia_capensis
ENSMUSG00000050188	Lsm10	100	90.323	ENSPVAG00000008644	LSM10	98	89.256	Pteropus_vampyrus
ENSMUSG00000050188	Lsm10	96	67.416	ENSPNYG00000003138	oscp1a	94	67.241	Pundamilia_nyererei
ENSMUSG00000050188	Lsm10	96	68.539	ENSPNAG00000028829	oscp1a	98	64.407	Pygocentrus_nattereri
ENSMUSG00000050188	Lsm10	100	99.180	ENSRNOG00000025716	Lsm10	100	99.180	Rattus_norvegicus
ENSMUSG00000050188	Lsm10	100	91.398	ENSRBIG00000001561	LSM10	98	92.500	Rhinopithecus_bieti
ENSMUSG00000050188	Lsm10	100	91.398	ENSRROG00000011414	LSM10	98	92.500	Rhinopithecus_roxellana
ENSMUSG00000050188	Lsm10	100	90.323	ENSSBOG00000036413	-	98	91.667	Saimiri_boliviensis_boliviensis
ENSMUSG00000050188	Lsm10	100	84.946	ENSSHAG00000018056	LSM10	98	82.645	Sarcophilus_harrisii
ENSMUSG00000050188	Lsm10	100	67.742	ENSSFOG00015019954	lsm10	100	64.754	Scleropages_formosus
ENSMUSG00000050188	Lsm10	95	68.182	ENSSMAG00000001297	oscp1a	98	66.087	Scophthalmus_maximus
ENSMUSG00000050188	Lsm10	96	67.416	ENSSDUG00000007090	oscp1a	94	64.655	Seriola_dumerili
ENSMUSG00000050188	Lsm10	96	68.539	ENSSLDG00000000800	oscp1a	96	65.517	Seriola_lalandi_dorsalis
ENSMUSG00000050188	Lsm10	100	94.624	ENSSARG00000004211	LSM10	98	91.057	Sorex_araneus
ENSMUSG00000050188	Lsm10	97	68.889	ENSSPAG00000009229	oscp1a	96	66.379	Stegastes_partitus
ENSMUSG00000050188	Lsm10	100	93.548	ENSSSCG00000038916	LSM10	98	90.833	Sus_scrofa
ENSMUSG00000050188	Lsm10	100	72.043	ENSTGUG00000001600	-	99	71.074	Taeniopygia_guttata
ENSMUSG00000050188	Lsm10	100	72.043	ENSTGUG00000001602	-	99	71.074	Taeniopygia_guttata
ENSMUSG00000050188	Lsm10	95	71.591	ENSTRUG00000010531	oscp1a	94	67.241	Takifugu_rubripes
ENSMUSG00000050188	Lsm10	100	92.473	ENSTBEG00000016674	LSM10	98	94.167	Tupaia_belangeri
ENSMUSG00000050188	Lsm10	100	93.548	ENSUAMG00000020265	LSM10	98	91.736	Ursus_americanus
ENSMUSG00000050188	Lsm10	100	93.548	ENSUMAG00000001438	LSM10	56	91.736	Ursus_maritimus
ENSMUSG00000050188	Lsm10	100	95.699	ENSVVUG00000023209	LSM10	98	94.215	Vulpes_vulpes
ENSMUSG00000050188	Lsm10	100	75.269	ENSXETG00000027631	lsm10	99	69.672	Xenopus_tropicalis
ENSMUSG00000050188	Lsm10	95	65.909	ENSXCOG00000018776	oscp1a	74	64.103	Xiphophorus_couchianus
ENSMUSG00000050188	Lsm10	100	63.542	ENSXMAG00000019963	oscp1a	96	63.333	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005683	U7 snRNP	11574479.	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	11574479.	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0017069	snRNA binding	11574479.	ISO	Function
GO:0071208	histone pre-mRNA DCP binding	19470752.	IDA	Function
GO:0071209	U7 snRNA binding	-	ISO	Function
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	-	ISO	Process