EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000050244 (Gene tree)
Gene ID: 217995
Gene Symbol: Heatr1
Alias: B130016L12Rik
Full Name: HEAT repeat containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 45263 bases
Position: chr13:12395027-12440289
Accession: 2442524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000054084	U3snoRNP10	PF12397.8	1.7e-32	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000221746	-	446	-	-	- (aa)	-	-
ENSMUST00000221051	-	556	-	-	- (aa)	-	-
ENSMUST00000059270	-	6780	-	ENSMUSP00000054084	2143 (aa)	-	G3X9B1
ENSMUST00000221616	-	681	-	-	- (aa)	-	-
ENSMUST00000222091	-	2482	-	ENSMUSP00000152435	744 (aa)	-	A0A1Y7VNI1
ENSMUST00000222817	-	373	-	-	- (aa)	-	-
ENSMUST00000221046	-	1325	-	ENSMUSP00000152410	344 (aa)	-	A0A1Y7VNG8
ENSMUST00000223324	-	193	-	ENSMUSP00000152797	4 (aa)	-	UPI00054191F9

Gene Model

Click here to download ENSMUSG00000050244's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000050244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000050244	Heatr1	96	88.224	ENSG00000119285	HEATR1	100	94.167	Homo_sapiens
ENSMUSG00000050244	Heatr1	100	48.688	ENSAPOG00000008169	heatr1	100	49.011	Acanthochromis_polyacanthus
ENSMUSG00000050244	Heatr1	100	81.521	ENSAMEG00000001015	HEATR1	100	81.521	Ailuropoda_melanoleuca
ENSMUSG00000050244	Heatr1	100	51.662	ENSACIG00000015343	heatr1	100	51.847	Amphilophus_citrinellus
ENSMUSG00000050244	Heatr1	85	63.356	ENSAPEG00000009996	heatr1	100	48.070	Amphiprion_percula
ENSMUSG00000050244	Heatr1	100	50.647	ENSATEG00000013260	heatr1	100	50.739	Anabas_testudineus
ENSMUSG00000050244	Heatr1	99	63.522	ENSAPLG00000008015	HEATR1	100	63.662	Anas_platyrhynchos
ENSMUSG00000050244	Heatr1	100	83.808	ENSANAG00000021975	HEATR1	100	87.536	Aotus_nancymaae
ENSMUSG00000050244	Heatr1	98	60.831	ENSACLG00000017561	-	96	60.831	Astatotilapia_calliptera
ENSMUSG00000050244	Heatr1	100	50.712	ENSAMXG00000040261	heatr1	100	50.804	Astyanax_mexicanus
ENSMUSG00000050244	Heatr1	100	81.895	ENSBTAG00000044100	HEATR1	100	81.895	Bos_taurus
ENSMUSG00000050244	Heatr1	84	31.438	WBGene00022739	toe-1	85	30.081	Caenorhabditis_elegans
ENSMUSG00000050244	Heatr1	96	87.633	ENSCJAG00000017734	HEATR1	100	87.633	Callithrix_jacchus
ENSMUSG00000050244	Heatr1	100	82.361	ENSCAFG00000010919	HEATR1	100	82.361	Canis_familiaris
ENSMUSG00000050244	Heatr1	96	87.150	ENSCAFG00020026884	HEATR1	100	87.150	Canis_lupus_dingo
ENSMUSG00000050244	Heatr1	100	81.055	ENSCHIG00000022619	HEATR1	100	81.055	Capra_hircus
ENSMUSG00000050244	Heatr1	96	86.667	ENSTSYG00000000988	HEATR1	100	86.667	Carlito_syrichta
ENSMUSG00000050244	Heatr1	92	68.649	ENSCAPG00000011461	HEATR1	100	68.649	Cavia_aperea
ENSMUSG00000050244	Heatr1	100	82.688	ENSCPOG00000008331	HEATR1	100	82.688	Cavia_porcellus
ENSMUSG00000050244	Heatr1	96	87.536	ENSCCAG00000037071	HEATR1	100	87.536	Cebus_capucinus
ENSMUSG00000050244	Heatr1	96	87.838	ENSCATG00000021120	HEATR1	100	87.838	Cercocebus_atys
ENSMUSG00000050244	Heatr1	100	83.396	ENSCLAG00000016900	HEATR1	100	83.396	Chinchilla_lanigera
ENSMUSG00000050244	Heatr1	100	83.769	ENSCSAG00000009731	HEATR1	100	83.769	Chlorocebus_sabaeus
ENSMUSG00000050244	Heatr1	90	95.745	ENSCHOG00000004046	HEATR1	90	95.745	Choloepus_hoffmanni
ENSMUSG00000050244	Heatr1	99	65.085	ENSCPBG00000004198	HEATR1	99	64.897	Chrysemys_picta_bellii
ENSMUSG00000050244	Heatr1	84	47.931	ENSCING00000009854	-	99	41.568	Ciona_intestinalis
ENSMUSG00000050244	Heatr1	82	46.996	ENSCSAVG00000000516	-	98	31.944	Ciona_savignyi
ENSMUSG00000050244	Heatr1	96	87.548	ENSCANG00000027702	HEATR1	100	87.548	Colobus_angolensis_palliatus
ENSMUSG00000050244	Heatr1	100	91.741	ENSCGRG00001020538	Heatr1	100	91.741	Cricetulus_griseus_chok1gshd
ENSMUSG00000050244	Heatr1	100	91.741	ENSCGRG00000016828	Heatr1	100	91.741	Cricetulus_griseus_crigri
ENSMUSG00000050244	Heatr1	89	62.866	ENSCVAG00000019837	-	94	62.866	Cyprinodon_variegatus
ENSMUSG00000050244	Heatr1	100	52.130	ENSDARG00000099742	heatr1	100	52.268	Danio_rerio
ENSMUSG00000050244	Heatr1	100	81.966	ENSDNOG00000009046	HEATR1	100	81.966	Dasypus_novemcinctus
ENSMUSG00000050244	Heatr1	86	89.492	ENSDORG00000004607	Heatr1	99	85.452	Dipodomys_ordii
ENSMUSG00000050244	Heatr1	82	39.502	FBgn0086451	l(2)k09022	75	34.747	Drosophila_melanogaster
ENSMUSG00000050244	Heatr1	86	88.475	ENSETEG00000004144	HEATR1	93	79.029	Echinops_telfairi
ENSMUSG00000050244	Heatr1	100	84.041	ENSECAG00000021443	HEATR1	100	84.041	Equus_caballus
ENSMUSG00000050244	Heatr1	82	90.698	ENSEEUG00000008946	HEATR1	82	90.698	Erinaceus_europaeus
ENSMUSG00000050244	Heatr1	85	68.367	ENSELUG00000005309	heatr1	100	53.088	Esox_lucius
ENSMUSG00000050244	Heatr1	97	62.435	ENSFALG00000013475	HEATR1	100	62.435	Ficedula_albicollis
ENSMUSG00000050244	Heatr1	100	82.743	ENSFDAG00000012144	HEATR1	100	82.743	Fukomys_damarensis
ENSMUSG00000050244	Heatr1	88	60.645	ENSFHEG00000019723	-	100	59.568	Fundulus_heteroclitus
ENSMUSG00000050244	Heatr1	100	49.698	ENSGMOG00000014830	heatr1	100	49.698	Gadus_morhua
ENSMUSG00000050244	Heatr1	100	47.852	ENSGAFG00000014904	heatr1	100	47.945	Gambusia_affinis
ENSMUSG00000050244	Heatr1	100	48.429	ENSGACG00000010205	heatr1	100	48.475	Gasterosteus_aculeatus
ENSMUSG00000050244	Heatr1	100	65.322	ENSGAGG00000018712	HEATR1	100	65.137	Gopherus_agassizii
ENSMUSG00000050244	Heatr1	96	88.031	ENSGGOG00000006913	HEATR1	100	88.031	Gorilla_gorilla
ENSMUSG00000050244	Heatr1	94	61.585	ENSHBUG00000007268	-	98	61.585	Haplochromis_burtoni
ENSMUSG00000050244	Heatr1	100	83.388	ENSHGLG00000016543	HEATR1	100	83.388	Heterocephalus_glaber_female
ENSMUSG00000050244	Heatr1	100	83.341	ENSHGLG00100015785	HEATR1	100	83.341	Heterocephalus_glaber_male
ENSMUSG00000050244	Heatr1	100	52.374	ENSIPUG00000012219	heatr1	100	52.374	Ictalurus_punctatus
ENSMUSG00000050244	Heatr1	100	83.154	ENSSTOG00000007293	HEATR1	100	83.154	Ictidomys_tridecemlineatus
ENSMUSG00000050244	Heatr1	99	59.366	ENSLBEG00000013928	-	99	59.366	Labrus_bergylta
ENSMUSG00000050244	Heatr1	86	68.475	ENSLOCG00000016621	-	98	68.269	Lepisosteus_oculatus
ENSMUSG00000050244	Heatr1	86	90.169	ENSLAFG00000002968	-	100	76.949	Loxodonta_africana
ENSMUSG00000050244	Heatr1	96	87.548	ENSMFAG00000044672	HEATR1	100	87.548	Macaca_fascicularis
ENSMUSG00000050244	Heatr1	96	87.645	ENSMMUG00000015135	HEATR1	100	87.645	Macaca_mulatta
ENSMUSG00000050244	Heatr1	96	87.645	ENSMNEG00000035612	HEATR1	100	87.645	Macaca_nemestrina
ENSMUSG00000050244	Heatr1	96	88.031	ENSMLEG00000035012	HEATR1	100	88.031	Mandrillus_leucophaeus
ENSMUSG00000050244	Heatr1	88	63.123	ENSMAMG00000010181	heatr1	100	51.007	Mastacembelus_armatus
ENSMUSG00000050244	Heatr1	91	61.830	ENSMZEG00005013121	-	97	61.830	Maylandia_zebra
ENSMUSG00000050244	Heatr1	100	60.813	ENSMGAG00000011761	HEATR1	100	60.860	Meleagris_gallopavo
ENSMUSG00000050244	Heatr1	96	88.406	ENSMICG00000015859	HEATR1	100	88.406	Microcebus_murinus
ENSMUSG00000050244	Heatr1	100	74.033	ENSMODG00000007936	HEATR1	100	73.893	Monodelphis_domestica
ENSMUSG00000050244	Heatr1	88	62.791	ENSMALG00000011014	heatr1	99	46.456	Monopterus_albus
ENSMUSG00000050244	Heatr1	100	96.454	MGP_PahariEiJ_G0019273	Heatr1	100	96.454	Mus_pahari
ENSMUSG00000050244	Heatr1	100	99.160	MGP_SPRETEiJ_G0019081	Heatr1	100	99.160	Mus_spretus
ENSMUSG00000050244	Heatr1	100	82.688	ENSMPUG00000012748	HEATR1	100	82.688	Mustela_putorius_furo
ENSMUSG00000050244	Heatr1	100	80.495	ENSMLUG00000024338	-	100	80.495	Myotis_lucifugus
ENSMUSG00000050244	Heatr1	92	80.374	ENSMLUG00000023156	-	100	80.374	Myotis_lucifugus
ENSMUSG00000050244	Heatr1	100	85.254	ENSNGAG00000017650	Heatr1	100	85.254	Nannospalax_galili
ENSMUSG00000050244	Heatr1	96	88.213	ENSNLEG00000003345	HEATR1	100	88.213	Nomascus_leucogenys
ENSMUSG00000050244	Heatr1	98	76.611	ENSOPRG00000010081	HEATR1	100	76.563	Ochotona_princeps
ENSMUSG00000050244	Heatr1	100	50.942	ENSONIG00000019095	heatr1	100	51.102	Oreochromis_niloticus
ENSMUSG00000050244	Heatr1	86	75.593	ENSOANG00000006937	-	100	58.897	Ornithorhynchus_anatinus
ENSMUSG00000050244	Heatr1	100	82.781	ENSOCUG00000014007	HEATR1	100	82.781	Oryctolagus_cuniculus
ENSMUSG00000050244	Heatr1	100	54.818	ENSORLG00015018281	heatr1	94	54.995	Oryzias_latipes_hsok
ENSMUSG00000050244	Heatr1	86	90.508	ENSOGAG00000010984	-	100	78.136	Otolemur_garnettii
ENSMUSG00000050244	Heatr1	100	81.101	ENSOARG00000003675	HEATR1	100	81.101	Ovis_aries
ENSMUSG00000050244	Heatr1	96	88.320	ENSPPAG00000036487	HEATR1	100	88.320	Pan_paniscus
ENSMUSG00000050244	Heatr1	96	87.150	ENSPPRG00000014254	HEATR1	100	87.150	Panthera_pardus
ENSMUSG00000050244	Heatr1	96	87.246	ENSPTIG00000017413	HEATR1	100	87.246	Panthera_tigris_altaica
ENSMUSG00000050244	Heatr1	96	88.417	ENSPTRG00000002141	HEATR1	100	88.417	Pan_troglodytes
ENSMUSG00000050244	Heatr1	96	87.934	ENSPANG00000020212	HEATR1	100	87.934	Papio_anubis
ENSMUSG00000050244	Heatr1	91	51.826	ENSPKIG00000002326	heatr1	100	51.876	Paramormyrops_kingsleyae
ENSMUSG00000050244	Heatr1	100	63.956	ENSPSIG00000010048	HEATR1	100	63.863	Pelodiscus_sinensis
ENSMUSG00000050244	Heatr1	97	55.718	ENSPMAG00000006017	-	100	50.392	Petromyzon_marinus
ENSMUSG00000050244	Heatr1	100	73.812	ENSPCIG00000008351	HEATR1	100	73.625	Phascolarctos_cinereus
ENSMUSG00000050244	Heatr1	100	49.358	ENSPFOG00000006008	heatr1	100	49.542	Poecilia_formosa
ENSMUSG00000050244	Heatr1	100	83.675	ENSPPYG00000000085	HEATR1	100	83.675	Pongo_abelii
ENSMUSG00000050244	Heatr1	91	85.491	ENSPCOG00000018534	HEATR1	98	86.667	Propithecus_coquereli
ENSMUSG00000050244	Heatr1	100	79.048	ENSPVAG00000013860	HEATR1	100	79.048	Pteropus_vampyrus
ENSMUSG00000050244	Heatr1	91	62.145	ENSPNYG00000011083	-	97	62.145	Pundamilia_nyererei
ENSMUSG00000050244	Heatr1	100	53.014	ENSPNAG00000025592	heatr1	100	53.152	Pygocentrus_nattereri
ENSMUSG00000050244	Heatr1	100	92.954	ENSRNOG00000047594	LOC108348069	100	92.954	Rattus_norvegicus
ENSMUSG00000050244	Heatr1	96	87.548	ENSRBIG00000039995	HEATR1	100	87.548	Rhinopithecus_bieti
ENSMUSG00000050244	Heatr1	96	88.031	ENSRROG00000037217	HEATR1	100	88.031	Rhinopithecus_roxellana
ENSMUSG00000050244	Heatr1	51	34.146	YJL109C	-	70	34.146	Saccharomyces_cerevisiae
ENSMUSG00000050244	Heatr1	100	83.574	ENSSBOG00000033349	HEATR1	100	87.246	Saimiri_boliviensis_boliviensis
ENSMUSG00000050244	Heatr1	100	73.753	ENSSHAG00000007902	HEATR1	100	73.613	Sarcophilus_harrisii
ENSMUSG00000050244	Heatr1	91	67.937	ENSSFOG00015009818	heatr1	100	54.180	Scleropages_formosus
ENSMUSG00000050244	Heatr1	88	60.133	ENSSMAG00000013148	heatr1	98	48.594	Scophthalmus_maximus
ENSMUSG00000050244	Heatr1	100	49.494	ENSSDUG00000013751	heatr1	100	49.816	Seriola_dumerili
ENSMUSG00000050244	Heatr1	73	68.750	ENSSLDG00000017083	heatr1	99	68.750	Seriola_lalandi_dorsalis
ENSMUSG00000050244	Heatr1	86	91.489	ENSSARG00000012336	HEATR1	86	91.489	Sorex_araneus
ENSMUSG00000050244	Heatr1	86	90.847	ENSSSCG00000010145	HEATR1	99	80.185	Sus_scrofa
ENSMUSG00000050244	Heatr1	100	63.279	ENSTGUG00000010404	HEATR1	100	63.279	Taeniopygia_guttata
ENSMUSG00000050244	Heatr1	96	57.211	ENSTNIG00000003577	heatr1	100	57.211	Tetraodon_nigroviridis
ENSMUSG00000050244	Heatr1	86	86.780	ENSTBEG00000017495	HEATR1	83	77.885	Tupaia_belangeri
ENSMUSG00000050244	Heatr1	97	82.658	ENSTTRG00000012382	HEATR1	97	82.658	Tursiops_truncatus
ENSMUSG00000050244	Heatr1	58	85.101	ENSUAMG00000010978	-	98	86.957	Ursus_americanus
ENSMUSG00000050244	Heatr1	86	90.169	ENSUAMG00000017854	-	94	89.508	Ursus_americanus
ENSMUSG00000050244	Heatr1	86	90.169	ENSUMAG00000013575	-	94	89.508	Ursus_maritimus
ENSMUSG00000050244	Heatr1	100	82.455	ENSVVUG00000009369	HEATR1	100	82.455	Vulpes_vulpes
ENSMUSG00000050244	Heatr1	97	65.774	ENSXETG00000009013	heatr1	100	58.314	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0001650	fibrillar center	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0030686	90S preribosome	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034455	t-UTP complex	21873635.	IBA	Component
GO:0045943	positive regulation of transcription by RNA polymerase I	21873635.	IBA	Process
GO:0045943	positive regulation of transcription by RNA polymerase I	-	ISO	Process
GO:2000234	positive regulation of rRNA processing	-	ISO	Process