EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000057793	-	4917	-	ENSMUSP00000056809	1108 (aa)	-	Q9Z103
ENSMUST00000131200	-	554	-	-	- (aa)	-	-
ENSMUST00000088001	-	4932	-	ENSMUSP00000085316	1108 (aa)	-	Q9Z103
ENSMUST00000139984	-	434	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000051149	Adnp	100	93.604	ENSG00000101126	ADNP	100	98.837	Homo_sapiens
ENSMUSG00000051149	Adnp	70	32.517	ENSMUSG00000053950	Adnp2	61	34.821	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	17222401.	IDA	Function
GO:0005507	copper ion binding	-	ISO	Function
GO:0005515	protein binding	17222401.	IPI	Function
GO:0005615	extracellular space	10037502.	IDA	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005634	nucleus	17222401.	IC	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007614	short-term memory	-	ISO	Process
GO:0010629	negative regulation of gene expression	-	ISO	Process
GO:0010835	regulation of protein ADP-ribosylation	-	ISO	Process
GO:0010976	positive regulation of neuron projection development	-	ISO	Process
GO:0019934	cGMP-mediated signaling	-	ISO	Process
GO:0030424	axon	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0032091	negative regulation of protein binding	-	ISO	Process
GO:0032147	activation of protein kinase activity	-	ISO	Process
GO:0033484	nitric oxide homeostasis	-	ISO	Process
GO:0042277	peptide binding	-	ISO	Function
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043524	negative regulation of neuron apoptotic process	10037502.	IDA	Process
GO:0043524	negative regulation of neuron apoptotic process	-	ISO	Process
GO:0045773	positive regulation of axon extension	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0050731	positive regulation of peptidyl-tyrosine phosphorylation	-	ISO	Process
GO:0050805	negative regulation of synaptic transmission	-	ISO	Process
GO:0051965	positive regulation of synapse assembly	-	ISO	Process