EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000051695 (Gene tree)
Gene ID: 23983
Gene Symbol: Pcbp1
Alias: WBP17|[a]CP-1|hnRNP E1
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 1830 bases
Position: chr6:86524492-86526321
Accession: 1345635
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000054863	KH_1	PF00013.29	3.5e-51	1	3
ENSMUSP00000054863	KH_1	PF00013.29	3.5e-51	2	3
ENSMUSP00000054863	KH_1	PF00013.29	3.5e-51	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000053015	-	1830	-	ENSMUSP00000054863	356 (aa)	-	P60335

Gene Model

Click here to download ENSMUSG00000051695's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG
mmu04216	Ferroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000051695's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000051695	Pcbp1	70	43.243	ENSMUSG00000033581	Igf2bp2	78	33.696
ENSMUSG00000051695	Pcbp1	60	31.169	ENSMUSG00000026843	Fubp3	88	32.370
ENSMUSG00000051695	Pcbp1	98	53.541	ENSMUSG00000023495	Pcbp4	97	71.724
ENSMUSG00000051695	Pcbp1	99	66.484	ENSMUSG00000001120	Pcbp3	99	65.873
ENSMUSG00000051695	Pcbp1	66	41.558	ENSMUSG00000030411	Nova2	51	41.558
ENSMUSG00000051695	Pcbp1	88	40.187	ENSMUSG00000021546	Hnrnpk	80	30.570
ENSMUSG00000051695	Pcbp1	69	34.667	ENSMUSG00000007670	Khsrp	57	34.667
ENSMUSG00000051695	Pcbp1	70	40.541	ENSMUSG00000021047	Nova1	57	40.541
ENSMUSG00000051695	Pcbp1	100	81.744	ENSMUSG00000056851	Pcbp2	100	92.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000051695	Pcbp1	100	100.000	ENSG00000169564	PCBP1	100	100.000	Homo_sapiens
ENSMUSG00000051695	Pcbp1	100	97.191	ENSAMEG00000016094	PCBP1	100	97.191	Ailuropoda_melanoleuca
ENSMUSG00000051695	Pcbp1	79	95.053	ENSANAG00000019364	-	100	95.053	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	89	87.658	ENSANAG00000027108	-	100	87.658	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	100	88.202	ENSANAG00000026077	-	100	88.202	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	79	91.873	ENSANAG00000022494	-	100	91.873	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	79	95.053	ENSANAG00000031745	-	100	95.053	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	100	89.045	ENSANAG00000023938	-	100	89.045	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	100	85.674	ENSANAG00000033377	-	100	85.674	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	97	96.243	ENSANAG00000026989	-	99	96.243	Aotus_nancymaae
ENSMUSG00000051695	Pcbp1	91	100.000	ENSBTAG00000008985	PCBP1	99	100.000	Bos_taurus
ENSMUSG00000051695	Pcbp1	100	94.382	ENSCJAG00000038388	-	95	94.382	Callithrix_jacchus
ENSMUSG00000051695	Pcbp1	100	99.719	ENSCAFG00000003326	PCBP1	100	99.719	Canis_familiaris
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCHIG00000007923	PCBP1	100	100.000	Capra_hircus
ENSMUSG00000051695	Pcbp1	100	99.438	ENSTSYG00000027848	PCBP1	100	99.438	Carlito_syrichta
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCPOG00000013511	PCBP1	100	100.000	Cavia_porcellus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCCAG00000019842	-	100	100.000	Cebus_capucinus
ENSMUSG00000051695	Pcbp1	100	91.292	ENSCCAG00000029186	-	98	91.292	Cebus_capucinus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCATG00000015029	PCBP1	100	100.000	Cercocebus_atys
ENSMUSG00000051695	Pcbp1	100	99.438	ENSCLAG00000017909	PCBP1	100	99.438	Chinchilla_lanigera
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCSAG00000019441	PCBP1	100	100.000	Chlorocebus_sabaeus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCANG00000018039	-	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000051695	Pcbp1	72	84.706	ENSCANG00000033810	-	87	84.706	Colobus_angolensis_palliatus
ENSMUSG00000051695	Pcbp1	100	89.888	ENSCANG00000032470	-	94	89.888	Colobus_angolensis_palliatus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCGRG00001015078	Pcbp1	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000051695	Pcbp1	100	100.000	ENSCGRG00000018899	Pcbp1	100	100.000	Cricetulus_griseus_crigri
ENSMUSG00000051695	Pcbp1	80	99.298	ENSDNOG00000036372	PCBP1	99	99.298	Dasypus_novemcinctus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSDORG00000008216	Pcbp1	100	100.000	Dipodomys_ordii
ENSMUSG00000051695	Pcbp1	100	100.000	ENSFCAG00000022238	PCBP1	100	100.000	Felis_catus
ENSMUSG00000051695	Pcbp1	100	99.719	ENSFDAG00000019637	PCBP1	100	99.719	Fukomys_damarensis
ENSMUSG00000051695	Pcbp1	100	100.000	ENSGGOG00000028130	PCBP1	100	100.000	Gorilla_gorilla
ENSMUSG00000051695	Pcbp1	100	97.753	ENSHGLG00000020243	-	100	97.753	Heterocephalus_glaber_female
ENSMUSG00000051695	Pcbp1	100	99.719	ENSHGLG00000020345	Pcbp1	100	99.719	Heterocephalus_glaber_female
ENSMUSG00000051695	Pcbp1	100	99.719	ENSHGLG00100019761	Pcbp1	100	99.719	Heterocephalus_glaber_male
ENSMUSG00000051695	Pcbp1	100	99.438	ENSHGLG00100019620	-	100	99.438	Heterocephalus_glaber_male
ENSMUSG00000051695	Pcbp1	100	100.000	ENSSTOG00000026002	PCBP1	100	100.000	Ictidomys_tridecemlineatus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSJJAG00000000737	Pcbp1	100	100.000	Jaculus_jaculus
ENSMUSG00000051695	Pcbp1	95	88.427	ENSMFAG00000003400	PCBP1	100	88.427	Macaca_fascicularis
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMMUG00000038295	PCBP1	100	100.000	Macaca_mulatta
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMNEG00000002934	PCBP1	100	100.000	Macaca_nemestrina
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMLEG00000027389	PCBP1	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000051695	Pcbp1	100	99.719	ENSMAUG00000009843	Pcbp1	100	99.719	Mesocricetus_auratus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMICG00000038221	PCBP1	100	100.000	Microcebus_murinus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMOCG00000008102	Pcbp1	100	100.000	Microtus_ochrogaster
ENSMUSG00000051695	Pcbp1	100	100.000	MGP_CAROLIEiJ_G0028598	Pcbp1	100	100.000	Mus_caroli
ENSMUSG00000051695	Pcbp1	100	100.000	MGP_PahariEiJ_G0022335	Pcbp1	100	100.000	Mus_pahari
ENSMUSG00000051695	Pcbp1	100	100.000	MGP_SPRETEiJ_G0029609	Pcbp1	100	100.000	Mus_spretus
ENSMUSG00000051695	Pcbp1	100	97.191	ENSMPUG00000007175	PCBP1	100	97.191	Mustela_putorius_furo
ENSMUSG00000051695	Pcbp1	100	100.000	ENSMLUG00000014173	PCBP1	100	100.000	Myotis_lucifugus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSNGAG00000014909	-	100	100.000	Nannospalax_galili
ENSMUSG00000051695	Pcbp1	100	100.000	ENSNGAG00000011957	-	100	100.000	Nannospalax_galili
ENSMUSG00000051695	Pcbp1	100	100.000	ENSNLEG00000018722	PCBP1	100	100.000	Nomascus_leucogenys
ENSMUSG00000051695	Pcbp1	100	83.427	ENSODEG00000000263	PCBP1	100	83.427	Octodon_degus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSOCUG00000003634	PCBP1	100	100.000	Oryctolagus_cuniculus
ENSMUSG00000051695	Pcbp1	100	97.191	ENSOGAG00000028946	PCBP1	100	97.191	Otolemur_garnettii
ENSMUSG00000051695	Pcbp1	100	100.000	ENSOARG00000019516	PCBP1	100	100.000	Ovis_aries
ENSMUSG00000051695	Pcbp1	100	98.034	ENSPPAG00000036116	PCBP1	99	98.599	Pan_paniscus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPPRG00000020533	PCBP1	100	100.000	Panthera_pardus
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPTIG00000007318	PCBP1	100	100.000	Panthera_tigris_altaica
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPTRG00000012025	PCBP1	100	100.000	Pan_troglodytes
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPANG00000011314	PCBP1	100	100.000	Papio_anubis
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPPYG00000012328	PCBP1	100	100.000	Pongo_abelii
ENSMUSG00000051695	Pcbp1	100	100.000	ENSPCOG00000026934	PCBP1	100	100.000	Propithecus_coquereli
ENSMUSG00000051695	Pcbp1	100	99.157	ENSRROG00000009684	-	95	99.157	Rhinopithecus_roxellana
ENSMUSG00000051695	Pcbp1	93	98.795	ENSRROG00000012514	-	100	98.795	Rhinopithecus_roxellana
ENSMUSG00000051695	Pcbp1	100	83.427	ENSSBOG00000035309	-	94	83.427	Saimiri_boliviensis_boliviensis
ENSMUSG00000051695	Pcbp1	100	99.719	ENSSSCG00000027224	PCBP1	100	99.719	Sus_scrofa
ENSMUSG00000051695	Pcbp1	51	100.000	ENSTBEG00000015706	-	51	100.000	Tupaia_belangeri
ENSMUSG00000051695	Pcbp1	91	99.690	ENSVVUG00000028033	PCBP1	99	99.690	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	15836633.	IDA	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	15836633.	IDA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0003723	RNA binding	10455157.	TAS	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005515	protein binding	15102471.	IPI	Function
GO:0005634	nucleus	15836633.16979592.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	16979592.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	10455157.	TAS	Process
GO:0008494	translation activator activity	10455157.	TAS	Function
GO:0016607	nuclear speck	-	ISO	Component
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0039694	viral RNA genome replication	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	15836633.	IDA	Process
GO:0098847	sequence-specific single stranded DNA binding	15836633.	IDA	Function