EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052406 (Gene tree)
Gene ID: 227656
Gene Symbol: Rexo4
Alias: Rex4|XPMC2H
Full Name: REX4%2C 3'-5' exonuclease
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 10824 bases
Position: chr2:26953563-26964386
Accession: 2684957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000070815	RNase_T	PF00929.24	5.4e-19	1	1
ENSMUSP00000109653	RNase_T	PF00929.24	6.1e-19	1	1
ENSMUSP00000121599	RNase_T	PF00929.24	3.1e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000128401	-	379	-	-	- (aa)	-	-
ENSMUST00000114020	-	2278	-	ENSMUSP00000109653	432 (aa)	-	Q6PAQ4
ENSMUST00000123126	-	644	-	-	- (aa)	-	-
ENSMUST00000139635	-	600	-	-	- (aa)	-	-
ENSMUST00000136710	-	1121	XM_006497915	ENSMUSP00000121599	363 (aa)	-	A2ALB1
ENSMUST00000145546	-	359	-	-	- (aa)	-	-
ENSMUST00000135752	-	737	-	-	- (aa)	-	-
ENSMUST00000064244	-	2281	-	ENSMUSP00000070815	409 (aa)	-	A2ALB2
ENSMUST00000128130	-	575	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000052406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052406's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052406	Rexo4	98	70.416	ENSG00000148300	REXO4	96	70.416	Homo_sapiens
ENSMUSG00000052406	Rexo4	83	51.852	ENSAPOG00000019264	rexo4	81	51.852	Acanthochromis_polyacanthus
ENSMUSG00000052406	Rexo4	92	65.879	ENSAMEG00000011649	REXO4	89	66.938	Ailuropoda_melanoleuca
ENSMUSG00000052406	Rexo4	83	51.429	ENSAOCG00000004087	rexo4	81	51.429	Amphiprion_ocellaris
ENSMUSG00000052406	Rexo4	83	51.143	ENSAPEG00000009106	rexo4	81	51.143	Amphiprion_percula
ENSMUSG00000052406	Rexo4	84	50.142	ENSATEG00000017662	rexo4	81	50.142	Anabas_testudineus
ENSMUSG00000052406	Rexo4	82	53.644	ENSAPLG00000005865	REXO4	99	53.644	Anas_platyrhynchos
ENSMUSG00000052406	Rexo4	98	67.157	ENSANAG00000028404	REXO4	96	68.460	Aotus_nancymaae
ENSMUSG00000052406	Rexo4	85	52.762	ENSACLG00000006007	rexo4	83	52.762	Astatotilapia_calliptera
ENSMUSG00000052406	Rexo4	83	51.676	ENSAMXG00000013291	rexo4	80	52.113	Astyanax_mexicanus
ENSMUSG00000052406	Rexo4	89	64.785	ENSBTAG00000019721	REXO4	88	64.247	Bos_taurus
ENSMUSG00000052406	Rexo4	98	67.237	ENSCJAG00000009774	REXO4	98	66.825	Callithrix_jacchus
ENSMUSG00000052406	Rexo4	94	67.342	ENSCAFG00000019767	REXO4	89	69.589	Canis_familiaris
ENSMUSG00000052406	Rexo4	97	67.574	ENSCAFG00020000983	-	85	70.411	Canis_lupus_dingo
ENSMUSG00000052406	Rexo4	91	64.116	ENSCHIG00000009517	REXO4	88	65.229	Capra_hircus
ENSMUSG00000052406	Rexo4	89	72.283	ENSTSYG00000027492	REXO4	87	72.283	Carlito_syrichta
ENSMUSG00000052406	Rexo4	84	70.349	ENSCAPG00000014583	REXO4	100	69.477	Cavia_aperea
ENSMUSG00000052406	Rexo4	97	66.667	ENSCPOG00000001386	REXO4	89	66.837	Cavia_porcellus
ENSMUSG00000052406	Rexo4	99	68.750	ENSCCAG00000027049	REXO4	99	61.593	Cebus_capucinus
ENSMUSG00000052406	Rexo4	98	69.438	ENSCATG00000028646	REXO4	87	71.925	Cercocebus_atys
ENSMUSG00000052406	Rexo4	80	71.212	ENSCLAG00000006919	REXO4	100	70.606	Chinchilla_lanigera
ENSMUSG00000052406	Rexo4	98	68.949	ENSCSAG00000015280	REXO4	96	68.949	Chlorocebus_sabaeus
ENSMUSG00000052406	Rexo4	95	51.111	ENSCPBG00000021152	REXO4	85	55.182	Chrysemys_picta_bellii
ENSMUSG00000052406	Rexo4	51	57.143	ENSCING00000010751	-	95	48.837	Ciona_intestinalis
ENSMUSG00000052406	Rexo4	98	68.949	ENSCANG00000029855	REXO4	96	68.949	Colobus_angolensis_palliatus
ENSMUSG00000052406	Rexo4	99	82.353	ENSCGRG00001013126	Rexo4	99	81.280	Cricetulus_griseus_chok1gshd
ENSMUSG00000052406	Rexo4	99	82.353	ENSCGRG00000009819	Rexo4	99	82.555	Cricetulus_griseus_crigri
ENSMUSG00000052406	Rexo4	83	50.435	ENSCSEG00000019343	rexo4	80	50.435	Cynoglossus_semilaevis
ENSMUSG00000052406	Rexo4	51	64.486	ENSCVAG00000014963	rexo4	58	64.486	Cyprinodon_variegatus
ENSMUSG00000052406	Rexo4	54	63.436	ENSDARG00000088619	rexo4	84	63.436	Danio_rerio
ENSMUSG00000052406	Rexo4	99	91.111	ENSDNOG00000002429	REXO4	68	91.111	Dasypus_novemcinctus
ENSMUSG00000052406	Rexo4	81	73.214	ENSDORG00000006190	Rexo4	99	73.214	Dipodomys_ordii
ENSMUSG00000052406	Rexo4	66	67.364	ENSEASG00005009915	-	79	67.355	Equus_asinus_asinus
ENSMUSG00000052406	Rexo4	93	69.554	ENSECAG00000007896	REXO4	83	70.053	Equus_caballus
ENSMUSG00000052406	Rexo4	86	48.438	ENSELUG00000003539	rexo4	85	48.579	Esox_lucius
ENSMUSG00000052406	Rexo4	92	67.810	ENSFCAG00000011652	REXO4	86	68.633	Felis_catus
ENSMUSG00000052406	Rexo4	85	55.890	ENSFALG00000001520	REXO4	88	55.556	Ficedula_albicollis
ENSMUSG00000052406	Rexo4	98	73.020	ENSFDAG00000016050	REXO4	96	73.267	Fukomys_damarensis
ENSMUSG00000052406	Rexo4	90	49.865	ENSFHEG00000002413	rexo4	86	50.276	Fundulus_heteroclitus
ENSMUSG00000052406	Rexo4	53	57.727	ENSGMOG00000012876	rexo4	66	57.727	Gadus_morhua
ENSMUSG00000052406	Rexo4	75	47.122	ENSGAFG00000015404	-	83	47.312	Gambusia_affinis
ENSMUSG00000052406	Rexo4	83	53.198	ENSGACG00000008065	rexo4	79	53.198	Gasterosteus_aculeatus
ENSMUSG00000052406	Rexo4	84	55.807	ENSGAGG00000010260	REXO4	84	56.322	Gopherus_agassizii
ENSMUSG00000052406	Rexo4	98	70.171	ENSGGOG00000014508	REXO4	96	70.171	Gorilla_gorilla
ENSMUSG00000052406	Rexo4	85	52.632	ENSHBUG00000000542	rexo4	83	52.632	Haplochromis_burtoni
ENSMUSG00000052406	Rexo4	98	70.098	ENSHGLG00000016901	REXO4	99	69.565	Heterocephalus_glaber_female
ENSMUSG00000052406	Rexo4	98	70.098	ENSHGLG00100017444	REXO4	99	69.565	Heterocephalus_glaber_male
ENSMUSG00000052406	Rexo4	53	60.633	ENSHCOG00000018196	rexo4	58	60.633	Hippocampus_comes
ENSMUSG00000052406	Rexo4	89	46.736	ENSIPUG00000021084	rexo4	85	46.667	Ictalurus_punctatus
ENSMUSG00000052406	Rexo4	98	72.139	ENSSTOG00000003754	REXO4	90	72.751	Ictidomys_tridecemlineatus
ENSMUSG00000052406	Rexo4	98	74.321	ENSJJAG00000013002	Rexo4	97	73.223	Jaculus_jaculus
ENSMUSG00000052406	Rexo4	83	50.289	ENSKMAG00000015039	rexo4	81	50.289	Kryptolebias_marmoratus
ENSMUSG00000052406	Rexo4	83	50.857	ENSLBEG00000025570	rexo4	80	50.857	Labrus_bergylta
ENSMUSG00000052406	Rexo4	85	51.515	ENSLACG00000012399	REXO4	83	51.515	Latimeria_chalumnae
ENSMUSG00000052406	Rexo4	83	52.762	ENSLOCG00000003577	rexo4	80	51.613	Lepisosteus_oculatus
ENSMUSG00000052406	Rexo4	99	60.432	ENSLAFG00000011274	REXO4	92	63.089	Loxodonta_africana
ENSMUSG00000052406	Rexo4	98	69.193	ENSMFAG00000042425	REXO4	96	69.193	Macaca_fascicularis
ENSMUSG00000052406	Rexo4	98	68.949	ENSMMUG00000000935	REXO4	96	68.949	Macaca_mulatta
ENSMUSG00000052406	Rexo4	98	68.460	ENSMNEG00000031604	REXO4	96	68.460	Macaca_nemestrina
ENSMUSG00000052406	Rexo4	98	69.438	ENSMLEG00000037716	REXO4	96	69.438	Mandrillus_leucophaeus
ENSMUSG00000052406	Rexo4	84	50.852	ENSMAMG00000011251	rexo4	82	50.712	Mastacembelus_armatus
ENSMUSG00000052406	Rexo4	85	52.078	ENSMZEG00005012336	rexo4	83	51.801	Maylandia_zebra
ENSMUSG00000052406	Rexo4	84	55.313	ENSMGAG00000006521	REXO4	99	55.313	Meleagris_gallopavo
ENSMUSG00000052406	Rexo4	99	84.314	ENSMAUG00000015137	Rexo4	99	83.412	Mesocricetus_auratus
ENSMUSG00000052406	Rexo4	98	66.667	ENSMICG00000008422	REXO4	90	68.519	Microcebus_murinus
ENSMUSG00000052406	Rexo4	99	84.653	ENSMOCG00000020607	Rexo4	99	82.629	Microtus_ochrogaster
ENSMUSG00000052406	Rexo4	86	58.904	ENSMODG00000012817	REXO4	84	58.904	Monodelphis_domestica
ENSMUSG00000052406	Rexo4	85	52.247	ENSMALG00000019705	rexo4	82	52.101	Monopterus_albus
ENSMUSG00000052406	Rexo4	100	96.822	MGP_CAROLIEiJ_G0023332	-	100	97.971	Mus_caroli
ENSMUSG00000052406	Rexo4	99	92.822	MGP_PahariEiJ_G0024789	Rexo4	99	92.822	Mus_pahari
ENSMUSG00000052406	Rexo4	100	98.289	MGP_SPRETEiJ_G0024249	-	100	98.551	Mus_spretus
ENSMUSG00000052406	Rexo4	82	65.396	ENSMPUG00000012315	REXO4	97	65.396	Mustela_putorius_furo
ENSMUSG00000052406	Rexo4	99	73.333	ENSNGAG00000010700	Rexo4	99	73.333	Nannospalax_galili
ENSMUSG00000052406	Rexo4	87	51.491	ENSNBRG00000011712	rexo4	84	51.491	Neolamprologus_brichardi
ENSMUSG00000052406	Rexo4	98	69.024	ENSNLEG00000013130	-	96	69.024	Nomascus_leucogenys
ENSMUSG00000052406	Rexo4	98	64.286	ENSNLEG00000007556	-	87	68.927	Nomascus_leucogenys
ENSMUSG00000052406	Rexo4	79	86.047	ENSMEUG00000006513	-	70	86.047	Notamacropus_eugenii
ENSMUSG00000052406	Rexo4	84	65.029	ENSODEG00000015721	REXO4	100	65.029	Octodon_degus
ENSMUSG00000052406	Rexo4	85	53.186	ENSONIG00000020052	rexo4	83	53.186	Oreochromis_niloticus
ENSMUSG00000052406	Rexo4	87	55.014	ENSOANG00000002453	REXO4	95	55.014	Ornithorhynchus_anatinus
ENSMUSG00000052406	Rexo4	85	53.221	ENSORLG00000006904	rexo4	83	53.221	Oryzias_latipes
ENSMUSG00000052406	Rexo4	85	52.941	ENSORLG00020013768	rexo4	83	52.941	Oryzias_latipes_hni
ENSMUSG00000052406	Rexo4	85	53.221	ENSORLG00015012070	rexo4	83	52.691	Oryzias_latipes_hsok
ENSMUSG00000052406	Rexo4	85	51.275	ENSOMEG00000018327	rexo4	81	51.275	Oryzias_melastigma
ENSMUSG00000052406	Rexo4	98	66.256	ENSOGAG00000014040	REXO4	88	70.685	Otolemur_garnettii
ENSMUSG00000052406	Rexo4	98	70.416	ENSPPAG00000027911	REXO4	96	70.416	Pan_paniscus
ENSMUSG00000052406	Rexo4	97	67.000	ENSPPRG00000002894	REXO4	90	68.733	Panthera_pardus
ENSMUSG00000052406	Rexo4	94	58.974	ENSPTIG00000012007	REXO4	87	60.322	Panthera_tigris_altaica
ENSMUSG00000052406	Rexo4	98	70.416	ENSPTRG00000023363	REXO4	96	70.416	Pan_troglodytes
ENSMUSG00000052406	Rexo4	98	69.682	ENSPANG00000026040	REXO4	96	69.682	Papio_anubis
ENSMUSG00000052406	Rexo4	84	52.125	ENSPKIG00000024761	rexo4	81	52.125	Paramormyrops_kingsleyae
ENSMUSG00000052406	Rexo4	84	57.341	ENSPSIG00000016908	REXO4	84	57.341	Pelodiscus_sinensis
ENSMUSG00000052406	Rexo4	85	47.581	ENSPMGG00000005312	rexo4	82	47.581	Periophthalmus_magnuspinnatus
ENSMUSG00000052406	Rexo4	99	85.891	ENSPEMG00000017982	Rexo4	99	85.891	Peromyscus_maniculatus_bairdii
ENSMUSG00000052406	Rexo4	95	55.112	ENSPCIG00000017379	REXO4	84	57.618	Phascolarctos_cinereus
ENSMUSG00000052406	Rexo4	85	49.429	ENSPFOG00000017751	rexo4	83	49.858	Poecilia_formosa
ENSMUSG00000052406	Rexo4	85	50.287	ENSPLAG00000010487	rexo4	83	50.286	Poecilia_latipinna
ENSMUSG00000052406	Rexo4	85	50.575	ENSPMEG00000020767	rexo4	83	50.142	Poecilia_mexicana
ENSMUSG00000052406	Rexo4	85	49.713	ENSPREG00000021841	rexo4	83	49.570	Poecilia_reticulata
ENSMUSG00000052406	Rexo4	99	69.492	ENSPPYG00000019735	REXO4	97	69.492	Pongo_abelii
ENSMUSG00000052406	Rexo4	86	62.222	ENSPCAG00000010581	REXO4	85	62.500	Procavia_capensis
ENSMUSG00000052406	Rexo4	91	69.496	ENSPCOG00000025466	REXO4	88	70.081	Propithecus_coquereli
ENSMUSG00000052406	Rexo4	95	60.305	ENSPVAG00000001429	REXO4	86	62.050	Pteropus_vampyrus
ENSMUSG00000052406	Rexo4	85	52.210	ENSPNYG00000013712	rexo4	83	52.210	Pundamilia_nyererei
ENSMUSG00000052406	Rexo4	84	48.876	ENSPNAG00000019227	rexo4	79	48.864	Pygocentrus_nattereri
ENSMUSG00000052406	Rexo4	99	85.679	ENSRNOG00000027867	Rexo4	99	85.679	Rattus_norvegicus
ENSMUSG00000052406	Rexo4	99	68.765	ENSRBIG00000037515	REXO4	97	68.281	Rhinopithecus_bieti
ENSMUSG00000052406	Rexo4	99	68.523	ENSRROG00000028864	REXO4	97	68.039	Rhinopithecus_roxellana
ENSMUSG00000052406	Rexo4	99	61.685	ENSSBOG00000032587	REXO4	97	57.005	Saimiri_boliviensis_boliviensis
ENSMUSG00000052406	Rexo4	83	59.659	ENSSHAG00000005827	REXO4	90	58.583	Sarcophilus_harrisii
ENSMUSG00000052406	Rexo4	52	72.222	ENSSFOG00015017394	rexo4	84	56.230	Scleropages_formosus
ENSMUSG00000052406	Rexo4	84	50.867	ENSSMAG00000015441	rexo4	80	50.867	Scophthalmus_maximus
ENSMUSG00000052406	Rexo4	84	49.862	ENSSDUG00000023346	rexo4	80	49.862	Seriola_dumerili
ENSMUSG00000052406	Rexo4	84	51.420	ENSSLDG00000011085	rexo4	81	51.420	Seriola_lalandi_dorsalis
ENSMUSG00000052406	Rexo4	86	52.304	ENSSPUG00000015868	REXO4	85	52.304	Sphenodon_punctatus
ENSMUSG00000052406	Rexo4	83	51.576	ENSSPAG00000007221	rexo4	81	51.576	Stegastes_partitus
ENSMUSG00000052406	Rexo4	96	63.027	ENSSSCG00000023173	REXO4	87	64.420	Sus_scrofa
ENSMUSG00000052406	Rexo4	88	53.619	ENSTGUG00000005537	REXO4	91	54.076	Taeniopygia_guttata
ENSMUSG00000052406	Rexo4	86	50.000	ENSTRUG00000013225	rexo4	86	50.416	Takifugu_rubripes
ENSMUSG00000052406	Rexo4	87	51.397	ENSTNIG00000005873	rexo4	98	51.397	Tetraodon_nigroviridis
ENSMUSG00000052406	Rexo4	67	83.041	ENSTTRG00000007681	-	98	58.824	Tursiops_truncatus
ENSMUSG00000052406	Rexo4	92	67.454	ENSUAMG00000018676	REXO4	87	68.564	Ursus_americanus
ENSMUSG00000052406	Rexo4	86	62.465	ENSUMAG00000023164	REXO4	97	62.465	Ursus_maritimus
ENSMUSG00000052406	Rexo4	97	67.079	ENSVVUG00000027337	REXO4	85	70.137	Vulpes_vulpes
ENSMUSG00000052406	Rexo4	75	48.014	ENSXETG00000023096	rexo4	83	50.993	Xenopus_tropicalis
ENSMUSG00000052406	Rexo4	85	49.008	ENSXMAG00000013686	rexo4	86	49.292	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000726	non-recombinational repair	-	ISO	Process
GO:0000737	DNA catabolic process, endonucleolytic	-	ISO	Process
GO:0000738	DNA catabolic process, exonucleolytic	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	-	ISO	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0008408	3'-5' exonuclease activity	-	ISO	Function
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process