EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052459 (Gene tree)
Gene ID: 11964
Gene Symbol: Atp6v1a
Alias: Atp6a1|VA68|VPP2|lysosomal 70kDa
Full Name: ATPase%2C H+ transporting%2C lysosomal V1 subunit A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 54304
Position: chr16: 44085402-44139705
Accession: 1201780
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000137557	-	894	-	ENSMUSP00000116923	237 (aa)	-	D3Z1B9
ENSMUST00000124102	-	629	-	ENSMUSP00000118429	196 (aa)	-	D3YWH3
ENSMUST00000063661	-	3896	XM_006521720	ENSMUSP00000066886	617 (aa)	XP_006521783	P50516
ENSMUST00000147025	-	440	-	ENSMUSP00000118726	77 (aa)	-	D3YZ23
ENSMUST00000130036	-	3093	-	-	- (aa)	-	-
ENSMUST00000114666	-	4234	-	ENSMUSP00000110314	617 (aa)	-	P50516

Gene Model

Click here to download ENSMUSG00000052459's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00190	Oxidative phosphorylation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04145	Phagosome	KEGG
mmu04150	mTOR signaling pathway	KEGG
mmu04721	Synaptic vesicle cycle	KEGG
mmu04966	Collecting duct acid secretion	KEGG
mmu05165	Human papillomavirus infection	KEGG
mmu05323	Rheumatoid arthritis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052459's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052459	Atp6v1a	98	81.592	WBGene00013025	vha-13	99	81.592	Caenorhabditis_elegans
ENSMUSG00000052459	Atp6v1a	100	98.701	ENSG00000114573	ATP6V1A	100	98.055	Homo_sapiens
ENSMUSG00000052459	Atp6v1a	99	63.696	YDL185W	VMA1	60	63.696	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005774	vacuolar membrane	21873635.	IBA	Component
GO:0005829	cytosol	16177003.	IDA	Component
GO:0005886	plasma membrane	21873635.	IBA	Component
GO:0005886	plasma membrane	16177003.	IDA	Component
GO:0005902	microvillus	18667600.	IDA	Component
GO:0006811	ion transport	-	IEA	Process
GO:0006879	cellular iron ion homeostasis	-	ISO	Process
GO:0015991	ATP hydrolysis coupled proton transport	-	IEA	Process
GO:0016324	apical plasma membrane	18667600.	IDA	Component
GO:0033180	proton-transporting V-type ATPase, V1 domain	-	IEA	Component
GO:0036295	cellular response to increased oxygen levels	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0046034	ATP metabolic process	-	IEA	Process
GO:0046961	proton-transporting ATPase activity, rotational mechanism	21873635.	IBA	Function