EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052488 (Gene tree)
Gene ID: 27967
Gene Symbol: Cherp
Alias: 5730408I11Rik|D8Wsu96e|DAN16|SCAF6
Full Name: calcium homeostasis endoplasmic reticulum protein
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 14738 bases
Position: chr8:72460489-72475226
Accession: 106417
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000148273	Surp	PF01805.20	1.2e-15	1	1
ENSMUSP00000078469	Surp	PF01805.20	1.2e-15	1	1
ENSMUSP00000148273	G-patch	PF01585.23	1e-11	1	1
ENSMUSP00000078469	G-patch	PF01585.23	1e-11	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000212991	-	3646	-	ENSMUSP00000148273	938 (aa)	-	A0A1D5RL92
ENSMUST00000212016	-	779	-	-	- (aa)	-	-
ENSMUST00000212548	-	284	-	-	- (aa)	-	-
ENSMUST00000212586	-	912	-	-	- (aa)	-	-
ENSMUST00000212870	-	351	-	-	- (aa)	-	-
ENSMUST00000212070	-	382	-	-	- (aa)	-	-
ENSMUST00000079510	-	3713	XM_006509685	ENSMUSP00000078469	949 (aa)	XP_006509748	G5E8I8

Gene Model

Click here to download ENSMUSG00000052488's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052488's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052488	Cherp	99	92.865	ENSG00000085872	CHERP	99	92.757	Homo_sapiens
ENSMUSG00000052488	Cherp	59	63.445	ENSAPOG00000009646	cherp	64	65.079	Acanthochromis_polyacanthus
ENSMUSG00000052488	Cherp	99	64.451	ENSAOCG00000017846	cherp	99	64.625	Amphiprion_ocellaris
ENSMUSG00000052488	Cherp	99	64.271	ENSAPEG00000021128	cherp	99	64.195	Amphiprion_percula
ENSMUSG00000052488	Cherp	99	65.503	ENSATEG00000006341	cherp	79	66.447	Anabas_testudineus
ENSMUSG00000052488	Cherp	96	84.129	ENSAPLG00000010773	CHERP	98	84.812	Anas_platyrhynchos
ENSMUSG00000052488	Cherp	99	92.949	ENSANAG00000024284	CHERP	99	92.628	Aotus_nancymaae
ENSMUSG00000052488	Cherp	99	64.376	ENSACLG00000020053	cherp	99	64.687	Astatotilapia_calliptera
ENSMUSG00000052488	Cherp	99	67.155	ENSAMXG00000021637	cherp	93	66.493	Astyanax_mexicanus
ENSMUSG00000052488	Cherp	99	92.216	ENSBTAG00000005289	CHERP	99	92.108	Bos_taurus
ENSMUSG00000052488	Cherp	99	92.842	ENSCJAG00000040462	CHERP	99	92.521	Callithrix_jacchus
ENSMUSG00000052488	Cherp	99	92.973	ENSCAFG00000015671	CHERP	99	92.865	Canis_familiaris
ENSMUSG00000052488	Cherp	99	93.056	ENSCAFG00020009941	CHERP	99	92.735	Canis_lupus_dingo
ENSMUSG00000052488	Cherp	93	92.936	ENSCHIG00000013765	CHERP	95	96.739	Capra_hircus
ENSMUSG00000052488	Cherp	92	89.872	ENSCAPG00000000910	CHERP	72	92.784	Cavia_aperea
ENSMUSG00000052488	Cherp	100	92.111	ENSCPOG00000019949	CHERP	100	91.791	Cavia_porcellus
ENSMUSG00000052488	Cherp	99	93.056	ENSCCAG00000031534	CHERP	99	92.735	Cebus_capucinus
ENSMUSG00000052488	Cherp	99	93.162	ENSCATG00000031409	CHERP	99	92.735	Cercocebus_atys
ENSMUSG00000052488	Cherp	93	90.940	ENSCLAG00000005484	CHERP	99	90.713	Chinchilla_lanigera
ENSMUSG00000052488	Cherp	99	93.081	ENSCSAG00000005740	CHERP	99	92.973	Chlorocebus_sabaeus
ENSMUSG00000052488	Cherp	99	85.637	ENSCPBG00000014970	CHERP	99	85.421	Chrysemys_picta_bellii
ENSMUSG00000052488	Cherp	69	57.718	ENSCING00000004814	-	54	71.277	Ciona_intestinalis
ENSMUSG00000052488	Cherp	99	93.189	ENSCANG00000032053	CHERP	99	93.081	Colobus_angolensis_palliatus
ENSMUSG00000052488	Cherp	100	97.893	ENSCGRG00001023316	Cherp	100	97.893	Cricetulus_griseus_chok1gshd
ENSMUSG00000052488	Cherp	99	97.953	ENSCGRG00000015901	Cherp	99	97.953	Cricetulus_griseus_crigri
ENSMUSG00000052488	Cherp	79	65.971	ENSCSEG00000019700	cherp	79	64.683	Cynoglossus_semilaevis
ENSMUSG00000052488	Cherp	76	65.706	ENSCVAG00000003622	cherp	93	65.981	Cyprinodon_variegatus
ENSMUSG00000052488	Cherp	99	67.273	ENSDARG00000021812	cherp	100	75.472	Danio_rerio
ENSMUSG00000052488	Cherp	98	88.673	ENSDORG00000027623	Cherp	100	88.565	Dipodomys_ordii
ENSMUSG00000052488	Cherp	63	63.235	FBgn0261872	scaf6	55	63.235	Drosophila_melanogaster
ENSMUSG00000052488	Cherp	79	94.459	ENSEASG00005000428	CHERP	91	92.865	Equus_asinus_asinus
ENSMUSG00000052488	Cherp	99	93.081	ENSECAG00000012713	CHERP	99	92.973	Equus_caballus
ENSMUSG00000052488	Cherp	79	67.235	ENSELUG00000023026	cherp	75	68.152	Esox_lucius
ENSMUSG00000052488	Cherp	99	93.376	ENSFCAG00000013172	CHERP	99	93.056	Felis_catus
ENSMUSG00000052488	Cherp	79	83.780	ENSFALG00000013410	CHERP	86	84.989	Ficedula_albicollis
ENSMUSG00000052488	Cherp	78	83.737	ENSFDAG00000015981	CHERP	81	81.340	Fukomys_damarensis
ENSMUSG00000052488	Cherp	88	84.615	ENSFHEG00000009720	cherp	79	59.284	Fundulus_heteroclitus
ENSMUSG00000052488	Cherp	79	64.621	ENSGMOG00000008654	cherp	54	67.551	Gadus_morhua
ENSMUSG00000052488	Cherp	79	83.445	ENSGALG00000003824	CHERP	88	84.665	Gallus_gallus
ENSMUSG00000052488	Cherp	98	61.725	ENSGACG00000002053	cherp	78	63.364	Gasterosteus_aculeatus
ENSMUSG00000052488	Cherp	99	85.421	ENSGAGG00000014208	CHERP	99	85.205	Gopherus_agassizii
ENSMUSG00000052488	Cherp	99	63.877	ENSHBUG00000007405	cherp	99	64.475	Haplochromis_burtoni
ENSMUSG00000052488	Cherp	100	90.512	ENSHGLG00000002993	CHERP	100	90.745	Heterocephalus_glaber_female
ENSMUSG00000052488	Cherp	59	82.870	ENSHGLG00100010390	CHERP	68	83.796	Heterocephalus_glaber_male
ENSMUSG00000052488	Cherp	79	65.046	ENSHCOG00000007691	cherp	79	63.707	Hippocampus_comes
ENSMUSG00000052488	Cherp	99	67.375	ENSIPUG00000025008	cherp	79	69.353	Ictalurus_punctatus
ENSMUSG00000052488	Cherp	99	93.003	ENSSTOG00000012089	CHERP	100	92.573	Ictidomys_tridecemlineatus
ENSMUSG00000052488	Cherp	100	88.166	ENSJJAG00000017982	Cherp	81	94.744	Jaculus_jaculus
ENSMUSG00000052488	Cherp	99	63.924	ENSKMAG00000009101	cherp	99	62.936	Kryptolebias_marmoratus
ENSMUSG00000052488	Cherp	85	63.158	ENSLBEG00000007586	cherp	91	64.737	Labrus_bergylta
ENSMUSG00000052488	Cherp	79	79.504	ENSLACG00000018221	CHERP	80	77.075	Latimeria_chalumnae
ENSMUSG00000052488	Cherp	99	73.807	ENSLOCG00000003654	cherp	79	72.751	Lepisosteus_oculatus
ENSMUSG00000052488	Cherp	99	89.741	ENSLAFG00000009096	CHERP	100	89.417	Loxodonta_africana
ENSMUSG00000052488	Cherp	99	93.056	ENSMFAG00000033267	CHERP	99	92.735	Macaca_fascicularis
ENSMUSG00000052488	Cherp	99	90.812	ENSMMUG00000012958	CHERP	82	94.444	Macaca_mulatta
ENSMUSG00000052488	Cherp	99	93.056	ENSMNEG00000004125	CHERP	99	92.735	Macaca_nemestrina
ENSMUSG00000052488	Cherp	92	92.836	ENSMLEG00000044337	CHERP	99	86.885	Mandrillus_leucophaeus
ENSMUSG00000052488	Cherp	99	64.836	ENSMAMG00000022269	cherp	79	65.930	Mastacembelus_armatus
ENSMUSG00000052488	Cherp	99	64.376	ENSMZEG00005018014	cherp	99	64.687	Maylandia_zebra
ENSMUSG00000052488	Cherp	88	83.929	ENSMGAG00000005571	CHERP	97	83.295	Meleagris_gallopavo
ENSMUSG00000052488	Cherp	100	97.260	ENSMAUG00000015856	Cherp	100	97.260	Mesocricetus_auratus
ENSMUSG00000052488	Cherp	99	90.703	ENSMICG00000004577	CHERP	99	91.351	Microcebus_murinus
ENSMUSG00000052488	Cherp	100	97.548	ENSMOCG00000014697	Cherp	100	97.548	Microtus_ochrogaster
ENSMUSG00000052488	Cherp	98	65.711	ENSMMOG00000008525	cherp	77	65.699	Mola_mola
ENSMUSG00000052488	Cherp	99	88.593	ENSMODG00000014938	CHERP	100	88.593	Monodelphis_domestica
ENSMUSG00000052488	Cherp	99	65.360	ENSMALG00000020688	cherp	79	64.396	Monopterus_albus
ENSMUSG00000052488	Cherp	100	99.680	MGP_CAROLIEiJ_G0031220	Cherp	100	99.680	Mus_caroli
ENSMUSG00000052488	Cherp	100	98.507	MGP_PahariEiJ_G0021685	Cherp	100	98.507	Mus_pahari
ENSMUSG00000052488	Cherp	100	99.360	MGP_SPRETEiJ_G0032341	Cherp	100	99.360	Mus_spretus
ENSMUSG00000052488	Cherp	79	94.730	ENSMPUG00000016023	CHERP	78	94.362	Mustela_putorius_furo
ENSMUSG00000052488	Cherp	99	89.417	ENSMLUG00000013881	CHERP	99	89.093	Myotis_lucifugus
ENSMUSG00000052488	Cherp	99	95.601	ENSNGAG00000023323	Cherp	99	95.601	Nannospalax_galili
ENSMUSG00000052488	Cherp	79	65.098	ENSNBRG00000001914	cherp	81	65.535	Neolamprologus_brichardi
ENSMUSG00000052488	Cherp	99	93.297	ENSNLEG00000005536	CHERP	99	93.189	Nomascus_leucogenys
ENSMUSG00000052488	Cherp	89	90.753	ENSMEUG00000010840	CHERP	91	91.128	Notamacropus_eugenii
ENSMUSG00000052488	Cherp	78	93.333	ENSODEG00000001528	CHERP	81	93.197	Octodon_degus
ENSMUSG00000052488	Cherp	99	63.235	ENSONIG00000007686	cherp	99	63.828	Oreochromis_niloticus
ENSMUSG00000052488	Cherp	99	62.290	ENSORLG00020013142	cherp	86	73.294	Oryzias_latipes_hni
ENSMUSG00000052488	Cherp	99	62.395	ENSOMEG00000016947	cherp	75	75.375	Oryzias_melastigma
ENSMUSG00000052488	Cherp	100	90.745	ENSOGAG00000005834	CHERP	79	92.637	Otolemur_garnettii
ENSMUSG00000052488	Cherp	99	83.208	ENSOARG00000018876	CHERP	79	83.289	Ovis_aries
ENSMUSG00000052488	Cherp	99	92.949	ENSPPAG00000029195	CHERP	99	92.521	Pan_paniscus
ENSMUSG00000052488	Cherp	99	93.376	ENSPPRG00000003275	CHERP	99	93.056	Panthera_pardus
ENSMUSG00000052488	Cherp	92	75.077	ENSPTIG00000019778	CHERP	95	72.192	Panthera_tigris_altaica
ENSMUSG00000052488	Cherp	99	92.973	ENSPTRG00000010647	CHERP	99	92.757	Pan_troglodytes
ENSMUSG00000052488	Cherp	99	93.056	ENSPANG00000011698	CHERP	99	92.735	Papio_anubis
ENSMUSG00000052488	Cherp	98	85.081	ENSPSIG00000011974	CHERP	99	85.668	Pelodiscus_sinensis
ENSMUSG00000052488	Cherp	99	61.612	ENSPMGG00000023606	cherp	88	89.024	Periophthalmus_magnuspinnatus
ENSMUSG00000052488	Cherp	100	98.314	ENSPEMG00000011238	Cherp	100	98.314	Peromyscus_maniculatus_bairdii
ENSMUSG00000052488	Cherp	99	88.841	ENSPCIG00000019615	CHERP	95	88.841	Phascolarctos_cinereus
ENSMUSG00000052488	Cherp	99	64.798	ENSPFOG00000016899	cherp	79	65.707	Poecilia_formosa
ENSMUSG00000052488	Cherp	86	62.651	ENSPMEG00000002214	cherp	76	65.539	Poecilia_mexicana
ENSMUSG00000052488	Cherp	99	64.482	ENSPREG00000020774	cherp	79	65.359	Poecilia_reticulata
ENSMUSG00000052488	Cherp	99	87.135	ENSPPYG00000009691	CHERP	99	87.027	Pongo_abelii
ENSMUSG00000052488	Cherp	89	95.699	ENSPCAG00000001337	CHERP	90	95.652	Procavia_capensis
ENSMUSG00000052488	Cherp	64	98.485	ENSPCOG00000022788	CHERP	99	98.485	Propithecus_coquereli
ENSMUSG00000052488	Cherp	99	84.757	ENSPVAG00000004320	CHERP	90	97.826	Pteropus_vampyrus
ENSMUSG00000052488	Cherp	99	64.059	ENSPNYG00000003942	cherp	99	64.263	Pundamilia_nyererei
ENSMUSG00000052488	Cherp	99	66.321	ENSPNAG00000017179	cherp	99	65.599	Pygocentrus_nattereri
ENSMUSG00000052488	Cherp	100	98.721	ENSRNOG00000012323	Cherp	100	98.721	Rattus_norvegicus
ENSMUSG00000052488	Cherp	99	92.949	ENSRBIG00000038621	CHERP	99	92.628	Rhinopithecus_bieti
ENSMUSG00000052488	Cherp	99	93.056	ENSRROG00000040770	CHERP	99	92.735	Rhinopithecus_roxellana
ENSMUSG00000052488	Cherp	99	93.056	ENSSBOG00000014492	CHERP	99	92.628	Saimiri_boliviensis_boliviensis
ENSMUSG00000052488	Cherp	99	88.285	ENSSHAG00000010752	CHERP	99	88.287	Sarcophilus_harrisii
ENSMUSG00000052488	Cherp	81	56.774	ENSSFOG00015008022	cherp	84	75.522	Scleropages_formosus
ENSMUSG00000052488	Cherp	99	64.100	ENSSMAG00000005362	cherp	99	63.921	Scophthalmus_maximus
ENSMUSG00000052488	Cherp	99	66.948	ENSSDUG00000019712	cherp	79	68.872	Seriola_dumerili
ENSMUSG00000052488	Cherp	99	66.948	ENSSLDG00000012659	cherp	79	68.331	Seriola_lalandi_dorsalis
ENSMUSG00000052488	Cherp	99	81.553	ENSSPUG00000008901	CHERP	99	84.466	Sphenodon_punctatus
ENSMUSG00000052488	Cherp	99	64.974	ENSSPAG00000010681	cherp	95	64.817	Stegastes_partitus
ENSMUSG00000052488	Cherp	99	93.189	ENSSSCG00000013860	CHERP	99	93.081	Sus_scrofa
ENSMUSG00000052488	Cherp	79	83.378	ENSTGUG00000000680	CHERP	99	83.261	Taeniopygia_guttata
ENSMUSG00000052488	Cherp	82	63.046	ENSTRUG00000007429	cherp	88	62.791	Takifugu_rubripes
ENSMUSG00000052488	Cherp	100	62.004	ENSTNIG00000003363	cherp	80	62.853	Tetraodon_nigroviridis
ENSMUSG00000052488	Cherp	88	92.188	ENSTTRG00000015006	CHERP	89	92.188	Tursiops_truncatus
ENSMUSG00000052488	Cherp	99	87.163	ENSUAMG00000017295	CHERP	80	92.936	Ursus_americanus
ENSMUSG00000052488	Cherp	67	90.260	ENSUMAG00000000965	CHERP	70	87.421	Ursus_maritimus
ENSMUSG00000052488	Cherp	99	92.128	ENSVVUG00000016546	CHERP	99	92.234	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	26420826.	IPI	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0006874	cellular calcium ion homeostasis	-	ISO	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0033017	sarcoplasmic reticulum membrane	-	ISO	Component
GO:0044325	ion channel binding	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051209	release of sequestered calcium ion into cytosol	-	ISO	Process
GO:0070886	positive regulation of calcineurin-NFAT signaling cascade	-	ISO	Process