EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052565 (Gene tree)
Gene ID: 14957
Gene Symbol: Hist1h1d
Alias: H1.3|H1D|H1f3|H1s-4
Full Name: histone cluster 1%2C H1d
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 7425
Position: chr13: 23553262-23560686
Accession: 107502
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000045301	-	7425	-	ENSMUSP00000044395	221 (aa)	-	P43277

Gene Model

Click here to download ENSMUSG00000052565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052565's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052565	Hist1h1d	52	94.828	ENSG00000168298	HIST1H1E	53	93.966	Homo_sapiens
ENSMUSG00000052565	Hist1h1d	52	94.017	ENSMUSG00000051627	Hist1h1e	53	92.241	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	22083958.	IGI	Process
GO:0000786	nucleosome	-	IEA	Component
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003677	DNA binding	15562002.	IDA	Function
GO:0003690	double-stranded DNA binding	21873635.	IBA	Function
GO:0005515	protein binding	21873635.	IBA	Function
GO:0005515	protein binding	10893414.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005719	nuclear euchromatin	21873635.	IBA	Component
GO:0005719	nuclear euchromatin	-	ISO	Component
GO:0006334	nucleosome assembly	-	IEA	Process
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	22701719.	IMP	Process
GO:0016584	nucleosome positioning	21873635.	IBA	Process
GO:0016584	nucleosome positioning	12808097.	IMP	Process
GO:0030261	chromosome condensation	21873635.	IBA	Process
GO:0031490	chromatin DNA binding	-	ISO	Function
GO:0031492	nucleosomal DNA binding	21873635.	IBA	Function
GO:0031936	negative regulation of chromatin silencing	21873635.	IBA	Process
GO:0035327	transcriptionally active chromatin	21873635.	IBA	Component
GO:0045910	negative regulation of DNA recombination	21873635.	IBA	Process
GO:0080182	histone H3-K4 trimethylation	21873635.	IBA	Process
GO:0080182	histone H3-K4 trimethylation	22701719.	IGI	Process
GO:0098532	histone H3-K27 trimethylation	21873635.	IBA	Process
GO:0098532	histone H3-K27 trimethylation	22701719.	IGI	Process