EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052595 (Gene tree)
Gene ID: 69865
Gene Symbol: A1cf
Alias: 1810073H04Rik|ACF|apobec-1 complementation factor
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 79810 bases
Position: chr19:31868764-31948573
Accession: 1917115
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000153542	DND1_DSRM	PF14709.7	2.3e-25	1	1
ENSMUSP00000075235	DND1_DSRM	PF14709.7	2.4e-25	1	1
ENSMUSP00000153465	RRM_1	PF00076.22	4.6e-40	1	3
ENSMUSP00000153465	RRM_1	PF00076.22	4.6e-40	2	3
ENSMUSP00000153465	RRM_1	PF00076.22	4.6e-40	3	3
ENSMUSP00000153542	RRM_1	PF00076.22	2.7e-39	1	3
ENSMUSP00000153542	RRM_1	PF00076.22	2.7e-39	2	3
ENSMUSP00000153542	RRM_1	PF00076.22	2.7e-39	3	3
ENSMUSP00000075235	RRM_1	PF00076.22	2.9e-39	1	3
ENSMUSP00000075235	RRM_1	PF00076.22	2.9e-39	2	3
ENSMUSP00000075235	RRM_1	PF00076.22	2.9e-39	3	3
ENSMUSP00000153397	RRM_1	PF00076.22	6.4e-32	1	3
ENSMUSP00000153397	RRM_1	PF00076.22	6.4e-32	2	3
ENSMUSP00000153397	RRM_1	PF00076.22	6.4e-32	3	3

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224304	-	2968	XM_006527331	ENSMUSP00000153542	587 (aa)	XP_006527394	Q5YD48
ENSMUST00000225165	-	696	-	-	- (aa)	-	-
ENSMUST00000224400	-	1204	-	ENSMUSP00000153397	300 (aa)	-	A0A286YDF7
ENSMUST00000224564	-	1432	-	ENSMUSP00000153465	384 (aa)	-	Q5YD48
ENSMUST00000075838	-	2989	XM_017318290	ENSMUSP00000075235	595 (aa)	XP_017173779	Q5YD48

Gene Model

Click here to download ENSMUSG00000052595's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052595's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000052595	A1cf	80	53.398	ENSMUSG00000032423	Syncrip	70	52.308
ENSMUSG00000052595	A1cf	80	53.376	ENSMUSG00000066037	Hnrnpr	59	52.997
ENSMUSG00000052595	A1cf	54	41.546	ENSMUSG00000044595	Dnd1	58	41.546
ENSMUSG00000052595	A1cf	99	63.192	ENSMUSG00000070780	Rbm47	89	67.376
ENSMUSG00000052595	A1cf	96	70.064	ENSMUSG00000033882	Rbm46	88	70.064

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052595	A1cf	99	95.801	ENSG00000148584	A1CF	100	97.015	Homo_sapiens
ENSMUSG00000052595	A1cf	99	83.333	ENSAPOG00000008259	a1cf	100	73.109	Acanthochromis_polyacanthus
ENSMUSG00000052595	A1cf	99	94.737	ENSAMEG00000000523	A1CF	100	92.269	Ailuropoda_melanoleuca
ENSMUSG00000052595	A1cf	99	82.333	ENSACIG00000008632	a1cf	100	76.694	Amphilophus_citrinellus
ENSMUSG00000052595	A1cf	99	83.333	ENSAOCG00000023744	a1cf	93	85.030	Amphiprion_ocellaris
ENSMUSG00000052595	A1cf	99	83.278	ENSAPEG00000009537	a1cf	100	74.632	Amphiprion_percula
ENSMUSG00000052595	A1cf	99	82.667	ENSATEG00000013720	a1cf	100	77.063	Anabas_testudineus
ENSMUSG00000052595	A1cf	99	91.842	ENSAPLG00000002964	A1CF	100	86.409	Anas_platyrhynchos
ENSMUSG00000052595	A1cf	99	86.614	ENSACAG00000015269	A1CF	100	82.653	Anolis_carolinensis
ENSMUSG00000052595	A1cf	99	96.325	ENSANAG00000019974	A1CF	100	93.526	Aotus_nancymaae
ENSMUSG00000052595	A1cf	99	81.558	ENSACLG00000017428	a1cf	100	74.834	Astatotilapia_calliptera
ENSMUSG00000052595	A1cf	99	82.886	ENSAMXG00000018180	a1cf	100	73.223	Astyanax_mexicanus
ENSMUSG00000052595	A1cf	99	95.276	ENSBTAG00000021195	A1CF	100	93.680	Bos_taurus
ENSMUSG00000052595	A1cf	99	96.316	ENSCJAG00000005045	A1CF	100	93.613	Callithrix_jacchus
ENSMUSG00000052595	A1cf	99	94.474	ENSCAFG00000015581	A1CF	100	92.101	Canis_familiaris
ENSMUSG00000052595	A1cf	99	94.474	ENSCAFG00020026421	A1CF	100	92.101	Canis_lupus_dingo
ENSMUSG00000052595	A1cf	99	95.263	ENSCHIG00000020411	A1CF	100	92.101	Capra_hircus
ENSMUSG00000052595	A1cf	99	95.623	ENSTSYG00000001755	A1CF	100	92.238	Carlito_syrichta
ENSMUSG00000052595	A1cf	100	82.353	ENSCAPG00000017386	A1CF	100	82.353	Cavia_aperea
ENSMUSG00000052595	A1cf	99	95.526	ENSCPOG00000009807	A1CF	100	92.437	Cavia_porcellus
ENSMUSG00000052595	A1cf	99	96.316	ENSCCAG00000018168	A1CF	100	93.445	Cebus_capucinus
ENSMUSG00000052595	A1cf	99	95.801	ENSCATG00000043715	A1CF	100	93.186	Cercocebus_atys
ENSMUSG00000052595	A1cf	99	95.000	ENSCLAG00000010424	A1CF	100	93.289	Chinchilla_lanigera
ENSMUSG00000052595	A1cf	99	96.053	ENSCSAG00000007032	A1CF	100	93.277	Chlorocebus_sabaeus
ENSMUSG00000052595	A1cf	99	94.949	ENSCHOG00000009089	A1CF	98	87.973	Choloepus_hoffmanni
ENSMUSG00000052595	A1cf	99	90.789	ENSCPBG00000026464	A1CF	100	86.409	Chrysemys_picta_bellii
ENSMUSG00000052595	A1cf	99	95.789	ENSCANG00000038032	A1CF	100	93.277	Colobus_angolensis_palliatus
ENSMUSG00000052595	A1cf	99	97.105	ENSCGRG00001017413	A1cf	100	95.966	Cricetulus_griseus_chok1gshd
ENSMUSG00000052595	A1cf	99	97.105	ENSCGRG00000017332	A1cf	100	95.126	Cricetulus_griseus_crigri
ENSMUSG00000052595	A1cf	99	81.271	ENSCSEG00000002361	a1cf	100	75.622	Cynoglossus_semilaevis
ENSMUSG00000052595	A1cf	99	82.338	ENSCVAG00000010520	a1cf	100	76.568	Cyprinodon_variegatus
ENSMUSG00000052595	A1cf	99	81.271	ENSDARG00000002968	a1cf	100	79.258	Danio_rerio
ENSMUSG00000052595	A1cf	99	94.211	ENSDNOG00000002829	A1CF	100	91.765	Dasypus_novemcinctus
ENSMUSG00000052595	A1cf	82	91.304	ENSETEG00000012527	A1CF	81	91.304	Echinops_telfairi
ENSMUSG00000052595	A1cf	99	96.579	ENSEASG00005012924	A1CF	100	93.467	Equus_asinus_asinus
ENSMUSG00000052595	A1cf	99	96.053	ENSECAG00000010424	A1CF	100	92.965	Equus_caballus
ENSMUSG00000052595	A1cf	99	83.838	ENSEEUG00000000013	A1CF	97	80.856	Erinaceus_europaeus
ENSMUSG00000052595	A1cf	99	81.414	ENSELUG00000003159	a1cf	100	78.536	Esox_lucius
ENSMUSG00000052595	A1cf	99	93.963	ENSFCAG00000011179	A1CF	100	90.801	Felis_catus
ENSMUSG00000052595	A1cf	99	90.026	ENSFALG00000013183	A1CF	100	85.374	Ficedula_albicollis
ENSMUSG00000052595	A1cf	99	95.013	ENSFDAG00000019371	A1CF	100	92.504	Fukomys_damarensis
ENSMUSG00000052595	A1cf	99	82.000	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSMUSG00000052595	A1cf	99	80.537	ENSGMOG00000018943	a1cf	100	71.452	Gadus_morhua
ENSMUSG00000052595	A1cf	99	89.527	ENSGALG00000003765	A1CF	97	85.133	Gallus_gallus
ENSMUSG00000052595	A1cf	99	82.338	ENSGAFG00000014868	a1cf	100	71.429	Gambusia_affinis
ENSMUSG00000052595	A1cf	99	81.940	ENSGACG00000010241	a1cf	100	73.727	Gasterosteus_aculeatus
ENSMUSG00000052595	A1cf	99	89.527	ENSGAGG00000016508	A1CF	97	85.968	Gopherus_agassizii
ENSMUSG00000052595	A1cf	99	95.789	ENSGGOG00000009670	A1CF	100	93.445	Gorilla_gorilla
ENSMUSG00000052595	A1cf	99	82.078	ENSHBUG00000021959	a1cf	100	76.198	Haplochromis_burtoni
ENSMUSG00000052595	A1cf	99	95.000	ENSHGLG00000008955	A1CF	100	93.277	Heterocephalus_glaber_female
ENSMUSG00000052595	A1cf	99	93.947	ENSHGLG00100000518	A1CF	100	92.605	Heterocephalus_glaber_male
ENSMUSG00000052595	A1cf	99	76.276	ENSHCOG00000017669	a1cf	100	72.403	Hippocampus_comes
ENSMUSG00000052595	A1cf	99	83.557	ENSIPUG00000010367	a1cf	96	82.090	Ictalurus_punctatus
ENSMUSG00000052595	A1cf	99	84.615	ENSKMAG00000006568	a1cf	100	76.585	Kryptolebias_marmoratus
ENSMUSG00000052595	A1cf	99	79.897	ENSLBEG00000020994	a1cf	98	75.534	Labrus_bergylta
ENSMUSG00000052595	A1cf	99	86.089	ENSLACG00000008061	A1CF	100	80.711	Latimeria_chalumnae
ENSMUSG00000052595	A1cf	99	85.185	ENSLOCG00000006302	a1cf	100	80.500	Lepisosteus_oculatus
ENSMUSG00000052595	A1cf	99	94.595	ENSLAFG00000015462	A1CF	100	92.101	Loxodonta_africana
ENSMUSG00000052595	A1cf	99	96.063	ENSMFAG00000035948	A1CF	100	93.186	Macaca_fascicularis
ENSMUSG00000052595	A1cf	99	96.063	ENSMMUG00000007077	A1CF	100	93.186	Macaca_mulatta
ENSMUSG00000052595	A1cf	99	95.801	ENSMNEG00000031454	A1CF	100	93.015	Macaca_nemestrina
ENSMUSG00000052595	A1cf	99	95.789	ENSMLEG00000037223	A1CF	100	93.277	Mandrillus_leucophaeus
ENSMUSG00000052595	A1cf	99	79.481	ENSMAMG00000010402	a1cf	100	75.497	Mastacembelus_armatus
ENSMUSG00000052595	A1cf	99	81.510	ENSMZEG00005013245	a1cf	100	76.000	Maylandia_zebra
ENSMUSG00000052595	A1cf	99	90.289	ENSMGAG00000001507	A1CF	100	85.427	Meleagris_gallopavo
ENSMUSG00000052595	A1cf	99	96.579	ENSMAUG00000007422	A1cf	100	95.294	Mesocricetus_auratus
ENSMUSG00000052595	A1cf	99	95.276	ENSMICG00000003377	A1CF	100	92.203	Microcebus_murinus
ENSMUSG00000052595	A1cf	99	97.368	ENSMOCG00000021536	A1cf	100	95.630	Microtus_ochrogaster
ENSMUSG00000052595	A1cf	99	81.333	ENSMMOG00000009422	a1cf	100	68.823	Mola_mola
ENSMUSG00000052595	A1cf	99	91.864	ENSMODG00000016478	A1CF	97	90.595	Monodelphis_domestica
ENSMUSG00000052595	A1cf	99	83.000	ENSMALG00000012992	a1cf	100	72.973	Monopterus_albus
ENSMUSG00000052595	A1cf	100	100.000	MGP_CAROLIEiJ_G0022873	A1cf	100	100.000	Mus_caroli
ENSMUSG00000052595	A1cf	100	98.824	MGP_PahariEiJ_G0014366	A1cf	100	98.824	Mus_pahari
ENSMUSG00000052595	A1cf	100	99.496	MGP_SPRETEiJ_G0023792	A1cf	100	99.496	Mus_spretus
ENSMUSG00000052595	A1cf	100	86.387	ENSMPUG00000016971	A1CF	100	86.387	Mustela_putorius_furo
ENSMUSG00000052595	A1cf	99	94.474	ENSMLUG00000016071	A1CF	100	91.765	Myotis_lucifugus
ENSMUSG00000052595	A1cf	99	96.959	ENSNGAG00000015136	A1cf	100	94.790	Nannospalax_galili
ENSMUSG00000052595	A1cf	99	82.338	ENSNBRG00000001712	a1cf	100	76.529	Neolamprologus_brichardi
ENSMUSG00000052595	A1cf	99	96.316	ENSNLEG00000012028	A1CF	100	94.118	Nomascus_leucogenys
ENSMUSG00000052595	A1cf	99	91.919	ENSMEUG00000015909	A1CF	100	87.027	Notamacropus_eugenii
ENSMUSG00000052595	A1cf	99	79.474	ENSOPRG00000010667	A1CF	97	82.453	Ochotona_princeps
ENSMUSG00000052595	A1cf	99	82.338	ENSONIG00000019105	a1cf	100	76.033	Oreochromis_niloticus
ENSMUSG00000052595	A1cf	99	90.339	ENSOANG00000007360	A1CF	99	87.800	Ornithorhynchus_anatinus
ENSMUSG00000052595	A1cf	99	94.226	ENSOCUG00000011587	A1CF	100	92.007	Oryctolagus_cuniculus
ENSMUSG00000052595	A1cf	99	81.271	ENSORLG00000013342	a1cf	100	72.330	Oryzias_latipes
ENSMUSG00000052595	A1cf	99	81.605	ENSORLG00020000586	a1cf	100	73.453	Oryzias_latipes_hni
ENSMUSG00000052595	A1cf	99	81.605	ENSORLG00015018569	a1cf	100	73.290	Oryzias_latipes_hsok
ENSMUSG00000052595	A1cf	99	81.667	ENSOMEG00000013531	a1cf	100	73.466	Oryzias_melastigma
ENSMUSG00000052595	A1cf	99	95.263	ENSOGAG00000012884	A1CF	100	91.765	Otolemur_garnettii
ENSMUSG00000052595	A1cf	99	95.000	ENSOARG00000013695	A1CF	100	92.101	Ovis_aries
ENSMUSG00000052595	A1cf	99	95.789	ENSPPAG00000028115	A1CF	100	95.749	Pan_paniscus
ENSMUSG00000052595	A1cf	99	93.947	ENSPPRG00000012180	A1CF	100	90.924	Panthera_pardus
ENSMUSG00000052595	A1cf	99	93.947	ENSPTIG00000021223	A1CF	100	90.924	Panthera_tigris_altaica
ENSMUSG00000052595	A1cf	99	95.538	ENSPTRG00000002508	A1CF	100	93.277	Pan_troglodytes
ENSMUSG00000052595	A1cf	99	96.063	ENSPANG00000021988	A1CF	100	93.186	Papio_anubis
ENSMUSG00000052595	A1cf	99	85.570	ENSPKIG00000025176	a1cf	100	79.534	Paramormyrops_kingsleyae
ENSMUSG00000052595	A1cf	99	90.551	ENSPSIG00000010318	A1CF	100	85.714	Pelodiscus_sinensis
ENSMUSG00000052595	A1cf	98	79.630	ENSPMGG00000013359	a1cf	99	69.031	Periophthalmus_magnuspinnatus
ENSMUSG00000052595	A1cf	99	97.635	ENSPEMG00000015021	A1cf	100	96.134	Peromyscus_maniculatus_bairdii
ENSMUSG00000052595	A1cf	99	90.814	ENSPCIG00000002175	A1CF	100	86.565	Phascolarctos_cinereus
ENSMUSG00000052595	A1cf	99	82.292	ENSPFOG00000007437	-	100	76.384	Poecilia_formosa
ENSMUSG00000052595	A1cf	99	82.292	ENSPFOG00000006683	a1cf	100	76.547	Poecilia_formosa
ENSMUSG00000052595	A1cf	99	82.338	ENSPLAG00000001210	-	100	76.238	Poecilia_latipinna
ENSMUSG00000052595	A1cf	99	82.338	ENSPLAG00000000026	a1cf	100	76.238	Poecilia_latipinna
ENSMUSG00000052595	A1cf	99	71.169	ENSPMEG00000000921	a1cf	100	68.874	Poecilia_mexicana
ENSMUSG00000052595	A1cf	99	71.094	ENSPMEG00000015529	-	100	69.118	Poecilia_mexicana
ENSMUSG00000052595	A1cf	99	81.771	ENSPREG00000016298	a1cf	100	76.221	Poecilia_reticulata
ENSMUSG00000052595	A1cf	99	96.063	ENSPPYG00000002819	A1CF	100	93.867	Pongo_abelii
ENSMUSG00000052595	A1cf	86	76.357	ENSPCAG00000006463	A1CF	70	83.673	Procavia_capensis
ENSMUSG00000052595	A1cf	99	95.789	ENSPCOG00000024172	A1CF	100	92.953	Propithecus_coquereli
ENSMUSG00000052595	A1cf	99	82.292	ENSPNYG00000017944	a1cf	100	76.509	Pundamilia_nyererei
ENSMUSG00000052595	A1cf	99	83.946	ENSPNAG00000007704	a1cf	100	79.362	Pygocentrus_nattereri
ENSMUSG00000052595	A1cf	100	98.126	ENSRNOG00000033195	A1cf	100	98.126	Rattus_norvegicus
ENSMUSG00000052595	A1cf	99	93.603	ENSRBIG00000042892	A1CF	100	91.252	Rhinopithecus_bieti
ENSMUSG00000052595	A1cf	99	96.053	ENSRROG00000041398	A1CF	100	93.277	Rhinopithecus_roxellana
ENSMUSG00000052595	A1cf	99	96.316	ENSSBOG00000021930	A1CF	100	93.613	Saimiri_boliviensis_boliviensis
ENSMUSG00000052595	A1cf	99	91.339	ENSSHAG00000005096	A1CF	100	86.745	Sarcophilus_harrisii
ENSMUSG00000052595	A1cf	99	84.281	ENSSFOG00015011774	a1cf	100	78.487	Scleropages_formosus
ENSMUSG00000052595	A1cf	99	81.605	ENSSMAG00000013271	a1cf	100	74.756	Scophthalmus_maximus
ENSMUSG00000052595	A1cf	99	81.605	ENSSDUG00000013930	a1cf	100	76.783	Seriola_dumerili
ENSMUSG00000052595	A1cf	99	81.667	ENSSLDG00000004290	a1cf	100	70.401	Seriola_lalandi_dorsalis
ENSMUSG00000052595	A1cf	95	82.079	ENSSARG00000005940	A1CF	96	82.079	Sorex_araneus
ENSMUSG00000052595	A1cf	99	89.189	ENSSPUG00000006797	A1CF	95	85.237	Sphenodon_punctatus
ENSMUSG00000052595	A1cf	99	95.526	ENSSSCG00000010431	A1CF	100	92.941	Sus_scrofa
ENSMUSG00000052595	A1cf	99	90.526	ENSTGUG00000005090	A1CF	100	85.786	Taeniopygia_guttata
ENSMUSG00000052595	A1cf	99	81.208	ENSTRUG00000001982	a1cf	100	73.736	Takifugu_rubripes
ENSMUSG00000052595	A1cf	99	81.333	ENSTNIG00000003580	a1cf	100	74.472	Tetraodon_nigroviridis
ENSMUSG00000052595	A1cf	99	86.195	ENSTTRG00000013190	A1CF	95	85.062	Tursiops_truncatus
ENSMUSG00000052595	A1cf	99	94.751	ENSUAMG00000020065	A1CF	100	92.164	Ursus_americanus
ENSMUSG00000052595	A1cf	99	94.474	ENSUMAG00000011162	A1CF	100	91.933	Ursus_maritimus
ENSMUSG00000052595	A1cf	99	95.286	ENSVPAG00000006130	A1CF	86	88.499	Vicugna_pacos
ENSMUSG00000052595	A1cf	99	94.488	ENSVVUG00000002504	A1CF	100	92.164	Vulpes_vulpes
ENSMUSG00000052595	A1cf	99	77.953	ENSXETG00000006611	a1cf	100	76.500	Xenopus_tropicalis
ENSMUSG00000052595	A1cf	99	82.338	ENSXCOG00000003302	a1cf	100	77.243	Xiphophorus_couchianus
ENSMUSG00000052595	A1cf	99	82.292	ENSXMAG00000016703	a1cf	100	77.377	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	16055734.	TAS	Function
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0005515	protein binding	24916387.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	20541607.	IDA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005720	nuclear heterochromatin	-	ISO	Component
GO:0005737	cytoplasm	20541607.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007566	embryo implantation	16055734.	IMP	Process
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	21873635.	IBA	Process
GO:0010609	mRNA localization resulting in posttranscriptional regulation of gene expression	20541607.	IGI	Process
GO:0016554	cytidine to uridine editing	21873635.	IBA	Process
GO:0016554	cytidine to uridine editing	24916387.	IGI	Process
GO:0016554	cytidine to uridine editing	-	ISO	Process
GO:0016554	cytidine to uridine editing	16055734.	TAS	Process
GO:0016556	mRNA modification	21873635.	IBA	Process
GO:0016556	mRNA modification	20541607.	IGI	Process
GO:0030895	apolipoprotein B mRNA editing enzyme complex	21873635.	IBA	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	-	ISO	Component
GO:0030895	apolipoprotein B mRNA editing enzyme complex	16055734.	TAS	Component
GO:0045293	mRNA editing complex	-	ISO	Component
GO:0050714	positive regulation of protein secretion	-	ISO	Process
GO:0050821	protein stabilization	-	ISO	Process