EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052707 (Gene tree)
Gene ID: 233833
Gene Symbol: Tnrc6a
Alias: 2010321I05Rik|3110054G10Rik|CAGH26|D130023A07Rik|Tnrc6
Full Name: trinucleotide repeat containing 6a
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 71412 bases
Position: chr7:123123885-123195296
Accession: 2385292
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000146266	Ago_hook	PF10427.9	4.4e-19	1	1
ENSMUSP00000091595	Ago_hook	PF10427.9	9.1e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000206458	-	688	-	-	- (aa)	-	-
ENSMUST00000206014	-	463	-	ENSMUSP00000146300	154 (aa)	-	A0A0U1RQ94
ENSMUST00000206126	-	3297	-	-	- (aa)	-	-
ENSMUST00000205732	-	606	-	-	- (aa)	-	-
ENSMUST00000206888	-	3625	-	ENSMUSP00000145963	51 (aa)	-	A0A0U1RPF5
ENSMUST00000205514	-	358	-	ENSMUSP00000145912	69 (aa)	-	A0A0U1RPB4
ENSMUST00000094053	-	8183	XM_006507705	ENSMUSP00000091595	1896 (aa)	XP_006507768	Q3UHK8
ENSMUST00000205449	-	4312	-	-	- (aa)	-	-
ENSMUST00000205789	-	1783	-	-	- (aa)	-	-
ENSMUST00000206922	-	939	-	-	- (aa)	-	-
ENSMUST00000205760	-	5223	XM_006507708	ENSMUSP00000146266	1398 (aa)	XP_006507771	A0A0U1RQ65

Gene Model

Click here to download ENSMUSG00000052707's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052707's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000052707	Tnrc6a	98	38.260	ENSMUSG00000047888	Tnrc6b	99	41.712
ENSMUSG00000052707	Tnrc6a	98	44.482	ENSMUSG00000025571	Tnrc6c	99	40.570

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSG00000090905	TNRC6A	100	95.000	Homo_sapiens
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSAMEG00000009333	TNRC6A	99	91.056	Ailuropoda_melanoleuca
ENSMUSG00000052707	Tnrc6a	99	83.511	ENSAPLG00000009978	TNRC6A	100	78.478	Anas_platyrhynchos
ENSMUSG00000052707	Tnrc6a	99	59.141	ENSACAG00000011857	TNRC6A	100	55.191	Anolis_carolinensis
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSANAG00000025252	TNRC6A	100	93.920	Aotus_nancymaae
ENSMUSG00000052707	Tnrc6a	99	57.880	ENSAMXG00000019919	tnrc6a	100	57.697	Astyanax_mexicanus
ENSMUSG00000052707	Tnrc6a	99	93.710	ENSBTAG00000017999	TNRC6A	100	92.174	Bos_taurus
ENSMUSG00000052707	Tnrc6a	99	94.925	ENSCJAG00000020677	TNRC6A	100	92.268	Callithrix_jacchus
ENSMUSG00000052707	Tnrc6a	99	94.639	ENSCAFG00000017531	TNRC6A	99	92.965	Canis_familiaris
ENSMUSG00000052707	Tnrc6a	99	93.138	ENSCAFG00020021160	TNRC6A	99	91.987	Canis_lupus_dingo
ENSMUSG00000052707	Tnrc6a	100	92.174	ENSCHIG00000019448	TNRC6A	100	92.069	Capra_hircus
ENSMUSG00000052707	Tnrc6a	99	94.782	ENSTSYG00000012711	TNRC6A	100	93.609	Carlito_syrichta
ENSMUSG00000052707	Tnrc6a	99	94.149	ENSCPOG00000036684	TNRC6A	100	94.360	Cavia_porcellus
ENSMUSG00000052707	Tnrc6a	99	94.925	ENSCCAG00000033664	TNRC6A	100	93.822	Cebus_capucinus
ENSMUSG00000052707	Tnrc6a	99	93.817	ENSCATG00000019284	TNRC6A	99	93.537	Cercocebus_atys
ENSMUSG00000052707	Tnrc6a	100	88.895	ENSCLAG00000010217	TNRC6A	100	89.209	Chinchilla_lanigera
ENSMUSG00000052707	Tnrc6a	99	95.068	ENSCSAG00000006561	TNRC6A	100	91.531	Chlorocebus_sabaeus
ENSMUSG00000052707	Tnrc6a	99	88.921	ENSCHOG00000009374	TNRC6A	95	86.113	Choloepus_hoffmanni
ENSMUSG00000052707	Tnrc6a	99	79.558	ENSCPBG00000001881	TNRC6A	99	80.820	Chrysemys_picta_bellii
ENSMUSG00000052707	Tnrc6a	99	95.068	ENSCANG00000041549	TNRC6A	100	94.081	Colobus_angolensis_palliatus
ENSMUSG00000052707	Tnrc6a	100	96.689	ENSCGRG00001015021	Tnrc6a	100	96.689	Cricetulus_griseus_chok1gshd
ENSMUSG00000052707	Tnrc6a	99	95.691	ENSCGRG00000013351	Tnrc6a	99	95.691	Cricetulus_griseus_crigri
ENSMUSG00000052707	Tnrc6a	99	57.676	ENSDARG00000079688	tnrc6a	99	57.487	Danio_rerio
ENSMUSG00000052707	Tnrc6a	99	92.521	ENSDNOG00000013989	TNRC6A	99	89.286	Dasypus_novemcinctus
ENSMUSG00000052707	Tnrc6a	99	82.059	ENSETEG00000014658	TNRC6A	99	82.721	Echinops_telfairi
ENSMUSG00000052707	Tnrc6a	100	93.169	ENSEASG00005017693	TNRC6A	100	93.484	Equus_asinus_asinus
ENSMUSG00000052707	Tnrc6a	99	93.929	ENSECAG00000025056	TNRC6A	99	93.315	Equus_caballus
ENSMUSG00000052707	Tnrc6a	99	87.857	ENSEEUG00000004530	TNRC6A	99	84.648	Erinaceus_europaeus
ENSMUSG00000052707	Tnrc6a	99	93.710	ENSFCAG00000025236	TNRC6A	100	92.760	Felis_catus
ENSMUSG00000052707	Tnrc6a	99	81.650	ENSFALG00000003757	TNRC6A	99	77.040	Ficedula_albicollis
ENSMUSG00000052707	Tnrc6a	99	79.673	ENSGALG00000006068	TNRC6A	99	81.084	Gallus_gallus
ENSMUSG00000052707	Tnrc6a	99	78.880	ENSGAGG00000023209	TNRC6A	99	80.495	Gopherus_agassizii
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSGGOG00000005137	TNRC6A	99	93.776	Gorilla_gorilla
ENSMUSG00000052707	Tnrc6a	99	91.627	ENSHGLG00000012474	-	100	91.522	Heterocephalus_glaber_female
ENSMUSG00000052707	Tnrc6a	99	69.456	ENSHGLG00000007368	-	93	73.012	Heterocephalus_glaber_female
ENSMUSG00000052707	Tnrc6a	99	91.337	ENSHGLG00100012496	-	100	91.389	Heterocephalus_glaber_male
ENSMUSG00000052707	Tnrc6a	99	94.425	ENSSTOG00000023394	TNRC6A	99	90.631	Ictidomys_tridecemlineatus
ENSMUSG00000052707	Tnrc6a	99	72.132	ENSLACG00000006277	TNRC6A	100	67.723	Latimeria_chalumnae
ENSMUSG00000052707	Tnrc6a	99	83.002	ENSLOCG00000005517	tnrc6a	93	83.002	Lepisosteus_oculatus
ENSMUSG00000052707	Tnrc6a	98	92.499	ENSLAFG00000004209	TNRC6A	99	92.549	Loxodonta_africana
ENSMUSG00000052707	Tnrc6a	99	93.674	ENSMFAG00000003824	TNRC6A	72	93.959	Macaca_fascicularis
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSMMUG00000020428	TNRC6A	100	93.714	Macaca_mulatta
ENSMUSG00000052707	Tnrc6a	99	95.282	ENSMNEG00000034854	TNRC6A	100	93.382	Macaca_nemestrina
ENSMUSG00000052707	Tnrc6a	99	93.746	ENSMLEG00000042737	TNRC6A	97	90.099	Mandrillus_leucophaeus
ENSMUSG00000052707	Tnrc6a	99	82.778	ENSMGAG00000006455	TNRC6A	99	76.581	Meleagris_gallopavo
ENSMUSG00000052707	Tnrc6a	100	96.893	ENSMAUG00000012750	Tnrc6a	100	96.893	Mesocricetus_auratus
ENSMUSG00000052707	Tnrc6a	99	95.568	ENSMICG00000030685	TNRC6A	100	94.302	Microcebus_murinus
ENSMUSG00000052707	Tnrc6a	100	96.943	ENSMOCG00000000152	Tnrc6a	100	96.943	Microtus_ochrogaster
ENSMUSG00000052707	Tnrc6a	99	83.952	ENSMODG00000016348	TNRC6A	99	78.422	Monodelphis_domestica
ENSMUSG00000052707	Tnrc6a	99	98.784	MGP_CAROLIEiJ_G0030425	Tnrc6a	100	98.784	Mus_caroli
ENSMUSG00000052707	Tnrc6a	99	99.213	MGP_PahariEiJ_G0013635	Tnrc6a	100	99.213	Mus_pahari
ENSMUSG00000052707	Tnrc6a	99	98.999	MGP_SPRETEiJ_G0031539	Tnrc6a	100	98.999	Mus_spretus
ENSMUSG00000052707	Tnrc6a	99	83.238	ENSMPUG00000012324	TNRC6A	100	82.486	Mustela_putorius_furo
ENSMUSG00000052707	Tnrc6a	99	92.847	ENSMLUG00000002701	TNRC6A	100	88.555	Myotis_lucifugus
ENSMUSG00000052707	Tnrc6a	99	94.687	ENSNGAG00000020702	Tnrc6a	100	94.845	Nannospalax_galili
ENSMUSG00000052707	Tnrc6a	99	92.199	ENSNLEG00000011851	TNRC6A	98	92.017	Nomascus_leucogenys
ENSMUSG00000052707	Tnrc6a	93	88.151	ENSMEUG00000015959	-	77	83.056	Notamacropus_eugenii
ENSMUSG00000052707	Tnrc6a	95	98.507	ENSOPRG00000005819	TNRC6A	96	98.507	Ochotona_princeps
ENSMUSG00000052707	Tnrc6a	99	88.517	ENSODEG00000012802	TNRC6A	99	88.404	Octodon_degus
ENSMUSG00000052707	Tnrc6a	99	83.321	ENSOANG00000007672	TNRC6A	100	79.316	Ornithorhynchus_anatinus
ENSMUSG00000052707	Tnrc6a	99	93.571	ENSOCUG00000004325	TNRC6A	100	88.654	Oryctolagus_cuniculus
ENSMUSG00000052707	Tnrc6a	99	94.861	ENSOGAG00000006666	TNRC6A	100	91.740	Otolemur_garnettii
ENSMUSG00000052707	Tnrc6a	99	93.594	ENSOARG00000017950	TNRC6A	98	92.720	Ovis_aries
ENSMUSG00000052707	Tnrc6a	99	94.925	ENSPPAG00000028379	TNRC6A	100	93.633	Pan_paniscus
ENSMUSG00000052707	Tnrc6a	99	93.853	ENSPPRG00000005861	TNRC6A	100	92.865	Panthera_pardus
ENSMUSG00000052707	Tnrc6a	99	93.781	ENSPTIG00000006346	TNRC6A	99	91.579	Panthera_tigris_altaica
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSPTRG00000007898	TNRC6A	99	90.729	Pan_troglodytes
ENSMUSG00000052707	Tnrc6a	100	91.127	ENSPANG00000018523	TNRC6A	100	91.336	Papio_anubis
ENSMUSG00000052707	Tnrc6a	99	77.828	ENSPKIG00000012859	tnrc6a	99	76.355	Paramormyrops_kingsleyae
ENSMUSG00000052707	Tnrc6a	99	74.381	ENSPSIG00000003965	TNRC6A	99	77.673	Pelodiscus_sinensis
ENSMUSG00000052707	Tnrc6a	100	96.524	ENSPEMG00000016318	Tnrc6a	100	96.943	Peromyscus_maniculatus_bairdii
ENSMUSG00000052707	Tnrc6a	99	86.010	ENSPCIG00000012106	TNRC6A	100	81.575	Phascolarctos_cinereus
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSPPYG00000007202	TNRC6A	100	90.724	Pongo_abelii
ENSMUSG00000052707	Tnrc6a	95	96.907	ENSPCAG00000008260	TNRC6A	94	96.907	Procavia_capensis
ENSMUSG00000052707	Tnrc6a	100	91.998	ENSPCOG00000010134	TNRC6A	100	92.155	Propithecus_coquereli
ENSMUSG00000052707	Tnrc6a	85	75.421	ENSPVAG00000012066	TNRC6A	99	69.297	Pteropus_vampyrus
ENSMUSG00000052707	Tnrc6a	100	97.285	ENSRNOG00000024737	Tnrc6a	100	97.285	Rattus_norvegicus
ENSMUSG00000052707	Tnrc6a	99	95.068	ENSRBIG00000014222	TNRC6A	99	93.713	Rhinopithecus_bieti
ENSMUSG00000052707	Tnrc6a	99	95.068	ENSRROG00000032360	TNRC6A	100	91.709	Rhinopithecus_roxellana
ENSMUSG00000052707	Tnrc6a	99	94.996	ENSSBOG00000036197	TNRC6A	100	92.159	Saimiri_boliviensis_boliviensis
ENSMUSG00000052707	Tnrc6a	99	81.079	ENSSHAG00000008811	TNRC6A	99	82.383	Sarcophilus_harrisii
ENSMUSG00000052707	Tnrc6a	95	67.766	ENSSFOG00015008920	tnrc6a	100	57.960	Scleropages_formosus
ENSMUSG00000052707	Tnrc6a	64	82.948	ENSSARG00000002479	TNRC6A	89	75.797	Sorex_araneus
ENSMUSG00000052707	Tnrc6a	99	79.308	ENSSPUG00000010525	TNRC6A	100	77.695	Sphenodon_punctatus
ENSMUSG00000052707	Tnrc6a	99	94.853	ENSSSCG00000038870	TNRC6A	100	94.880	Sus_scrofa
ENSMUSG00000052707	Tnrc6a	99	78.719	ENSTGUG00000006142	TNRC6A	100	79.350	Taeniopygia_guttata
ENSMUSG00000052707	Tnrc6a	99	91.851	ENSTBEG00000014965	TNRC6A	99	88.918	Tupaia_belangeri
ENSMUSG00000052707	Tnrc6a	91	96.009	ENSTTRG00000002008	TNRC6A	93	90.831	Tursiops_truncatus
ENSMUSG00000052707	Tnrc6a	79	92.838	ENSUAMG00000006656	-	93	93.173	Ursus_americanus
ENSMUSG00000052707	Tnrc6a	99	95.068	ENSUMAG00000008274	TNRC6A	100	95.060	Ursus_maritimus
ENSMUSG00000052707	Tnrc6a	64	83.721	ENSVPAG00000010764	-	57	86.224	Vicugna_pacos
ENSMUSG00000052707	Tnrc6a	99	94.568	ENSVVUG00000005380	TNRC6A	99	93.027	Vulpes_vulpes
ENSMUSG00000052707	Tnrc6a	99	67.774	ENSXETG00000030437	TNRC6A	99	63.842	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISO	Component
GO:0000932	P-body	15494374.	ISS	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0009267	cellular response to starvation	15494374.	IDA	Process
GO:0031047	gene silencing by RNA	-	IEA	Process
GO:0032507	maintenance of protein location in cell	15494374.	ISS	Process
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035068	micro-ribonucleoprotein complex	-	ISO	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035195	gene silencing by miRNA	-	ISO	Process
GO:0035278	miRNA mediated inhibition of translation	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	15494374.	ISS	Component
GO:0060090	molecular adaptor activity	15494374.	ISS	Function
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process