EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000064740	-	1519	-	ENSMUSP00000065113	346 (aa)	-	Q9WUM5
ENSMUST00000127660	-	2767	-	-	- (aa)	-	-
ENSMUST00000203632	-	534	-	ENSMUSP00000145246	126 (aa)	-	A0A0N4SVU4
ENSMUST00000123159	-	670	-	ENSMUSP00000134171	41 (aa)	-	G3UYP8
ENSMUST00000173366	-	630	-	-	- (aa)	-	-
ENSMUST00000173409	-	485	-	-	- (aa)	-	-

Gene Model

Pathways

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052738	Suclg1	89	71.429	WBGene00007350	sucl-1	95	71.429	Caenorhabditis_elegans
ENSMUSG00000052738	Suclg1	90	70.740	FBgn0004888	Scsalpha	95	70.740	Drosophila_melanogaster

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004550	nucleoside diphosphate kinase activity	21873635.	IBA	Function
GO:0004775	succinate-CoA ligase (ADP-forming) activity	21873635.	IBA	Function
GO:0004775	succinate-CoA ligase (ADP-forming) activity	-	ISO	Function
GO:0004776	succinate-CoA ligase (GDP-forming) activity	-	ISO	Function
GO:0005739	mitochondrion	14651853.18614015.	HDA	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005743	mitochondrial inner membrane	12865426.	HDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006099	tricarboxylic acid cycle	21873635.	IBA	Process
GO:0006099	tricarboxylic acid cycle	-	ISO	Process
GO:0006104	succinyl-CoA metabolic process	21873635.	IBA	Process
GO:0006104	succinyl-CoA metabolic process	-	ISO	Process
GO:0006105	succinate metabolic process	21873635.	IBA	Process
GO:0006105	succinate metabolic process	-	ISO	Process
GO:0009142	nucleoside triphosphate biosynthetic process	21873635.	IBA	Process
GO:0016874	ligase activity	-	IEA	Function
GO:0019003	GDP binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0045244	succinate-CoA ligase complex (GDP-forming)	-	ISO	Component
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0048037	cofactor binding	-	IEA	Function