EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000052748 (Gene tree)
Gene ID: 66875
Gene Symbol: Swt1
Alias: 1200016B10Rik
Full Name: SWT1 RNA endoribonuclease homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 60757 bases
Position: chr1:151367699-151428455
Accession: 1914125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000067516	PIN_4	PF13638.6	4.7e-28	1	1
ENSMUSP00000120483	PIN_4	PF13638.6	1.4e-18	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000129939	-	752	-	ENSMUSP00000120483	251 (aa)	-	F6V527
ENSMUST00000139244	-	323	-	-	- (aa)	-	-
ENSMUST00000141977	-	522	-	ENSMUSP00000117424	174 (aa)	-	F7ABE5
ENSMUST00000111883	-	2855	-	ENSMUSP00000107514	679 (aa)	-	Q9DBQ9
ENSMUST00000185247	-	1432	-	-	- (aa)	-	-
ENSMUST00000189595	-	2850	-	-	- (aa)	-	-
ENSMUST00000138095	-	490	-	-	- (aa)	-	-
ENSMUST00000124880	-	317	-	-	- (aa)	-	-
ENSMUST00000064771	-	3688	XM_011248058	ENSMUSP00000067516	907 (aa)	XP_011246360	Q9DBQ9
ENSMUST00000131312	-	5176	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000052748's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000052748's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000052748	Swt1	98	69.834	ENSG00000116668	SWT1	99	68.840	Homo_sapiens
ENSMUSG00000052748	Swt1	73	40.984	ENSAPOG00000014897	-	59	34.991	Acanthochromis_polyacanthus
ENSMUSG00000052748	Swt1	98	68.847	ENSAMEG00000013585	SWT1	99	68.514	Ailuropoda_melanoleuca
ENSMUSG00000052748	Swt1	73	40.984	ENSAOCG00000013932	swt1	58	35.467	Amphiprion_ocellaris
ENSMUSG00000052748	Swt1	73	41.530	ENSAPEG00000009613	-	58	35.467	Amphiprion_percula
ENSMUSG00000052748	Swt1	68	47.368	ENSATEG00000018946	swt1	58	36.102	Anabas_testudineus
ENSMUSG00000052748	Swt1	70	57.865	ENSAPLG00000008607	SWT1	91	50.898	Anas_platyrhynchos
ENSMUSG00000052748	Swt1	70	54.494	ENSACAG00000002276	SWT1	71	46.330	Anolis_carolinensis
ENSMUSG00000052748	Swt1	98	68.950	ENSANAG00000027068	SWT1	99	68.543	Aotus_nancymaae
ENSMUSG00000052748	Swt1	68	41.279	ENSACLG00000009742	swt1	75	32.372	Astatotilapia_calliptera
ENSMUSG00000052748	Swt1	69	45.977	ENSAMXG00000010971	swt1	59	37.797	Astyanax_mexicanus
ENSMUSG00000052748	Swt1	71	83.051	ENSBTAG00000004492	SWT1	99	62.697	Bos_taurus
ENSMUSG00000052748	Swt1	98	67.735	ENSCJAG00000005544	SWT1	99	67.219	Callithrix_jacchus
ENSMUSG00000052748	Swt1	99	68.192	ENSCAFG00000013543	SWT1	99	67.517	Canis_familiaris
ENSMUSG00000052748	Swt1	98	68.022	ENSCAFG00020015648	SWT1	99	68.868	Canis_lupus_dingo
ENSMUSG00000052748	Swt1	93	70.106	ENSCHIG00000023511	SWT1	99	78.644	Capra_hircus
ENSMUSG00000052748	Swt1	98	70.276	ENSTSYG00000010470	SWT1	99	69.392	Carlito_syrichta
ENSMUSG00000052748	Swt1	92	82.022	ENSCPOG00000014251	SWT1	100	67.266	Cavia_porcellus
ENSMUSG00000052748	Swt1	98	69.171	ENSCCAG00000033926	SWT1	99	68.764	Cebus_capucinus
ENSMUSG00000052748	Swt1	98	69.273	ENSCATG00000042210	SWT1	99	79.898	Cercocebus_atys
ENSMUSG00000052748	Swt1	92	75.635	ENSCLAG00000013959	SWT1	99	68.238	Chinchilla_lanigera
ENSMUSG00000052748	Swt1	98	69.383	ENSCSAG00000012895	SWT1	99	68.867	Chlorocebus_sabaeus
ENSMUSG00000052748	Swt1	85	80.000	ENSCHOG00000002211	-	64	80.000	Choloepus_hoffmanni
ENSMUSG00000052748	Swt1	71	61.017	ENSCPBG00000015691	SWT1	76	52.525	Chrysemys_picta_bellii
ENSMUSG00000052748	Swt1	98	69.282	ENSCANG00000032207	SWT1	99	80.308	Colobus_angolensis_palliatus
ENSMUSG00000052748	Swt1	99	85.870	ENSCGRG00001022955	Swt1	99	79.563	Cricetulus_griseus_chok1gshd
ENSMUSG00000052748	Swt1	99	85.870	ENSCGRG00000010224	Swt1	99	79.754	Cricetulus_griseus_crigri
ENSMUSG00000052748	Swt1	87	40.708	ENSCSEG00000017352	swt1	81	33.962	Cynoglossus_semilaevis
ENSMUSG00000052748	Swt1	68	47.953	ENSDARG00000094010	swt1	58	39.555	Danio_rerio
ENSMUSG00000052748	Swt1	96	61.437	ENSDNOG00000005254	SWT1	100	63.515	Dasypus_novemcinctus
ENSMUSG00000052748	Swt1	98	69.136	ENSDORG00000010531	Swt1	99	68.462	Dipodomys_ordii
ENSMUSG00000052748	Swt1	96	66.568	ENSEASG00005005530	SWT1	98	66.787	Equus_asinus_asinus
ENSMUSG00000052748	Swt1	90	69.434	ENSECAG00000012085	SWT1	98	68.351	Equus_caballus
ENSMUSG00000052748	Swt1	83	84.524	ENSEEUG00000003664	SWT1	87	84.524	Erinaceus_europaeus
ENSMUSG00000052748	Swt1	90	43.172	ENSELUG00000020565	swt1	57	37.733	Esox_lucius
ENSMUSG00000052748	Swt1	92	76.923	ENSFCAG00000011286	SWT1	99	67.996	Felis_catus
ENSMUSG00000052748	Swt1	66	60.714	ENSFALG00000003206	SWT1	69	50.160	Ficedula_albicollis
ENSMUSG00000052748	Swt1	98	69.274	ENSFDAG00000007569	SWT1	99	68.827	Fukomys_damarensis
ENSMUSG00000052748	Swt1	65	60.494	ENSGALG00000034230	SWT1	76	48.378	Gallus_gallus
ENSMUSG00000052748	Swt1	67	43.353	ENSGAFG00000007803	-	62	33.603	Gambusia_affinis
ENSMUSG00000052748	Swt1	71	60.894	ENSGAGG00000025050	SWT1	99	57.216	Gopherus_agassizii
ENSMUSG00000052748	Swt1	58	80.268	ENSGGOG00000041167	-	95	80.268	Gorilla_gorilla
ENSMUSG00000052748	Swt1	68	41.279	ENSHBUG00000006188	swt1	74	32.298	Haplochromis_burtoni
ENSMUSG00000052748	Swt1	97	69.040	ENSHGLG00000006542	SWT1	99	68.623	Heterocephalus_glaber_female
ENSMUSG00000052748	Swt1	92	80.513	ENSHGLG00100014408	SWT1	99	69.639	Heterocephalus_glaber_male
ENSMUSG00000052748	Swt1	69	48.276	ENSIPUG00000009113	-	58	37.370	Ictalurus_punctatus
ENSMUSG00000052748	Swt1	98	71.094	ENSSTOG00000010356	SWT1	99	70.647	Ictidomys_tridecemlineatus
ENSMUSG00000052748	Swt1	91	79.885	ENSJJAG00000015927	Swt1	99	67.753	Jaculus_jaculus
ENSMUSG00000052748	Swt1	67	41.765	ENSKMAG00000012533	swt1	59	35.034	Kryptolebias_marmoratus
ENSMUSG00000052748	Swt1	62	45.860	ENSLBEG00000020663	-	57	37.024	Labrus_bergylta
ENSMUSG00000052748	Swt1	70	55.429	ENSLACG00000009194	SWT1	99	45.092	Latimeria_chalumnae
ENSMUSG00000052748	Swt1	69	49.133	ENSLOCG00000001749	swt1	97	42.537	Lepisosteus_oculatus
ENSMUSG00000052748	Swt1	70	80.337	ENSLAFG00000004346	-	99	80.068	Loxodonta_africana
ENSMUSG00000052748	Swt1	98	69.053	ENSMFAG00000031793	SWT1	99	79.658	Macaca_fascicularis
ENSMUSG00000052748	Swt1	98	66.776	ENSMMUG00000013882	SWT1	99	77.320	Macaca_mulatta
ENSMUSG00000052748	Swt1	98	69.273	ENSMNEG00000035502	SWT1	99	79.829	Macaca_nemestrina
ENSMUSG00000052748	Swt1	98	69.724	ENSMLEG00000038692	SWT1	99	80.068	Mandrillus_leucophaeus
ENSMUSG00000052748	Swt1	68	41.279	ENSMZEG00005018489	swt1	74	32.298	Maylandia_zebra
ENSMUSG00000052748	Swt1	65	59.756	ENSMGAG00000000973	SWT1	100	51.839	Meleagris_gallopavo
ENSMUSG00000052748	Swt1	99	88.136	ENSMAUG00000007996	Swt1	99	73.472	Mesocricetus_auratus
ENSMUSG00000052748	Swt1	97	71.508	ENSMICG00000014975	SWT1	99	70.510	Microcebus_murinus
ENSMUSG00000052748	Swt1	99	85.870	ENSMOCG00000009776	Swt1	99	80.858	Microtus_ochrogaster
ENSMUSG00000052748	Swt1	97	56.630	ENSMODG00000007472	SWT1	99	55.543	Monodelphis_domestica
ENSMUSG00000052748	Swt1	72	45.355	ENSMALG00000019308	swt1	63	35.040	Monopterus_albus
ENSMUSG00000052748	Swt1	100	95.595	MGP_CAROLIEiJ_G0014692	Swt1	100	96.610	Mus_caroli
ENSMUSG00000052748	Swt1	99	90.400	MGP_PahariEiJ_G0027928	Swt1	100	93.220	Mus_pahari
ENSMUSG00000052748	Swt1	100	98.456	MGP_SPRETEiJ_G0015499	Swt1	100	98.630	Mus_spretus
ENSMUSG00000052748	Swt1	98	68.625	ENSMPUG00000011913	SWT1	99	67.738	Mustela_putorius_furo
ENSMUSG00000052748	Swt1	94	75.897	ENSMLUG00000001142	SWT1	99	66.231	Myotis_lucifugus
ENSMUSG00000052748	Swt1	94	90.798	ENSNGAG00000021080	Swt1	99	76.703	Nannospalax_galili
ENSMUSG00000052748	Swt1	98	69.912	ENSNLEG00000018031	SWT1	99	69.834	Nomascus_leucogenys
ENSMUSG00000052748	Swt1	98	44.751	ENSMEUG00000000236	-	99	43.978	Notamacropus_eugenii
ENSMUSG00000052748	Swt1	87	66.194	ENSOPRG00000000692	SWT1	89	66.194	Ochotona_princeps
ENSMUSG00000052748	Swt1	70	42.938	ENSONIG00000009994	swt1	100	36.757	Oreochromis_niloticus
ENSMUSG00000052748	Swt1	71	75.843	ENSOANG00000001013	-	96	57.419	Ornithorhynchus_anatinus
ENSMUSG00000052748	Swt1	98	62.472	ENSOCUG00000004901	SWT1	100	62.472	Oryctolagus_cuniculus
ENSMUSG00000052748	Swt1	62	45.223	ENSORLG00000009682	swt1	58	34.423	Oryzias_latipes
ENSMUSG00000052748	Swt1	62	45.223	ENSORLG00020011654	swt1	59	34.596	Oryzias_latipes_hni
ENSMUSG00000052748	Swt1	62	45.223	ENSORLG00015007734	swt1	59	34.251	Oryzias_latipes_hsok
ENSMUSG00000052748	Swt1	66	42.515	ENSOMEG00000006607	swt1	57	35.223	Oryzias_melastigma
ENSMUSG00000052748	Swt1	92	83.051	ENSOGAG00000016195	SWT1	99	67.956	Otolemur_garnettii
ENSMUSG00000052748	Swt1	99	68.301	ENSOARG00000004156	SWT1	99	67.429	Ovis_aries
ENSMUSG00000052748	Swt1	98	69.834	ENSPPAG00000021400	SWT1	99	68.729	Pan_paniscus
ENSMUSG00000052748	Swt1	98	68.992	ENSPPRG00000023754	SWT1	99	68.217	Panthera_pardus
ENSMUSG00000052748	Swt1	98	68.882	ENSPTIG00000021889	SWT1	99	68.106	Panthera_tigris_altaica
ENSMUSG00000052748	Swt1	98	69.834	ENSPTRG00000001777	SWT1	99	68.729	Pan_troglodytes
ENSMUSG00000052748	Swt1	98	68.798	ENSPANG00000005099	SWT1	99	79.387	Papio_anubis
ENSMUSG00000052748	Swt1	66	45.238	ENSPKIG00000005979	swt1	58	36.000	Paramormyrops_kingsleyae
ENSMUSG00000052748	Swt1	71	59.218	ENSPSIG00000008961	SWT1	75	51.879	Pelodiscus_sinensis
ENSMUSG00000052748	Swt1	66	47.024	ENSPMGG00000000152	-	76	33.571	Periophthalmus_magnuspinnatus
ENSMUSG00000052748	Swt1	99	84.932	ENSPEMG00000008208	Swt1	99	81.958	Peromyscus_maniculatus_bairdii
ENSMUSG00000052748	Swt1	98	55.638	ENSPCIG00000002443	SWT1	99	73.846	Phascolarctos_cinereus
ENSMUSG00000052748	Swt1	78	40.000	ENSPFOG00000010988	-	69	34.110	Poecilia_formosa
ENSMUSG00000052748	Swt1	78	40.000	ENSPLAG00000022908	-	59	33.959	Poecilia_latipinna
ENSMUSG00000052748	Swt1	78	40.000	ENSPMEG00000006943	-	59	33.788	Poecilia_mexicana
ENSMUSG00000052748	Swt1	98	69.171	ENSPPYG00000000415	SWT1	99	68.764	Pongo_abelii
ENSMUSG00000052748	Swt1	98	57.127	ENSPCAG00000008337	SWT1	100	56.748	Procavia_capensis
ENSMUSG00000052748	Swt1	67	81.319	ENSPCOG00000018195	-	93	81.319	Propithecus_coquereli
ENSMUSG00000052748	Swt1	78	70.099	ENSPVAG00000005968	SWT1	79	70.198	Pteropus_vampyrus
ENSMUSG00000052748	Swt1	68	41.279	ENSPNYG00000012934	swt1	74	32.298	Pundamilia_nyererei
ENSMUSG00000052748	Swt1	66	49.091	ENSPNAG00000017795	swt1	58	38.394	Pygocentrus_nattereri
ENSMUSG00000052748	Swt1	99	90.411	ENSRNOG00000032258	Swt1	99	87.143	Rattus_norvegicus
ENSMUSG00000052748	Swt1	98	67.146	ENSRBIG00000040630	SWT1	99	77.568	Rhinopithecus_bieti
ENSMUSG00000052748	Swt1	87	65.850	ENSRROG00000028596	SWT1	100	63.679	Rhinopithecus_roxellana
ENSMUSG00000052748	Swt1	98	69.570	ENSSBOG00000028825	SWT1	99	68.578	Saimiri_boliviensis_boliviensis
ENSMUSG00000052748	Swt1	98	56.250	ENSSHAG00000009241	SWT1	99	55.987	Sarcophilus_harrisii
ENSMUSG00000052748	Swt1	65	49.383	ENSSFOG00015004895	swt1	57	39.543	Scleropages_formosus
ENSMUSG00000052748	Swt1	63	46.250	ENSSDUG00000012345	swt1	58	35.751	Seriola_dumerili
ENSMUSG00000052748	Swt1	63	46.250	ENSSLDG00000003821	swt1	64	33.959	Seriola_lalandi_dorsalis
ENSMUSG00000052748	Swt1	70	78.857	ENSSARG00000011524	-	89	75.210	Sorex_araneus
ENSMUSG00000052748	Swt1	77	49.930	ENSSPUG00000003899	SWT1	79	49.930	Sphenodon_punctatus
ENSMUSG00000052748	Swt1	63	43.125	ENSSPAG00000001030	swt1	58	34.948	Stegastes_partitus
ENSMUSG00000052748	Swt1	99	65.323	ENSSSCG00000015569	SWT1	99	69.700	Sus_scrofa
ENSMUSG00000052748	Swt1	63	62.420	ENSTGUG00000003718	-	100	54.122	Taeniopygia_guttata
ENSMUSG00000052748	Swt1	76	40.000	ENSTRUG00000006420	swt1	70	33.876	Takifugu_rubripes
ENSMUSG00000052748	Swt1	57	82.258	ENSTBEG00000016891	-	54	82.258	Tupaia_belangeri
ENSMUSG00000052748	Swt1	98	67.293	ENSTTRG00000005914	SWT1	99	66.298	Tursiops_truncatus
ENSMUSG00000052748	Swt1	98	67.814	ENSUAMG00000020937	SWT1	98	70.646	Ursus_americanus
ENSMUSG00000052748	Swt1	98	67.960	ENSUMAG00000021918	SWT1	99	67.960	Ursus_maritimus
ENSMUSG00000052748	Swt1	90	79.147	ENSVPAG00000011855	SWT1	92	79.147	Vicugna_pacos
ENSMUSG00000052748	Swt1	98	68.439	ENSVVUG00000009182	SWT1	99	68.106	Vulpes_vulpes
ENSMUSG00000052748	Swt1	71	44.693	ENSXMAG00000023472	-	63	33.914	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006351	transcription, DNA-templated	21873635.	IBA	Process