EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000053317 (Gene tree)
Gene ID: 66212
Gene Symbol: Sec61b
Alias: 1190006C12Rik
Full Name: Sec61 beta subunit
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 8585
Position: chr4: 47474658-47483242
Accession: 1913462
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000136685	-	723	-	-	- (aa)	-	-
ENSMUST00000125622	-	424	-	ENSMUSP00000114184	117 (aa)	-	A8Y5P9
ENSMUST00000065678	-	564	-	ENSMUSP00000067681	96 (aa)	-	Q9CQS8
ENSMUST00000137461	-	430	-	ENSMUSP00000120880	140 (aa)	-	A8Y5P8

Gene Model

Click here to download ENSMUSG00000053317's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03060	Protein export	KEGG
mmu04141	Protein processing in endoplasmic reticulum	KEGG
mmu04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000053317's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000053317	Sec61b	100	98.958	ENSG00000106803	SEC61B	100	98.958	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005086	ARF guanyl-nucleotide exchange factor activity	21873635.	IBA	Function
GO:0005515	protein binding	11408579.	IPI	Function
GO:0005783	endoplasmic reticulum	23093945.23439682.	IDA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005784	Sec61 translocon complex	-	IEA	Component
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	21873635.	IBA	Process
GO:0006886	intracellular protein transport	-	IEA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0015450	P-P-bond-hydrolysis-driven protein transmembrane transporter activity	21873635.	IBA	Function
GO:0016020	membrane	22375059.	ISO	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0030433	ubiquitin-dependent ERAD pathway	-	ISO	Process
GO:0030970	retrograde protein transport, ER to cytosol	-	ISO	Process
GO:0031204	posttranslational protein targeting to membrane, translocation	21873635.	IBA	Process
GO:0031205	endoplasmic reticulum Sec complex	21873635.	IBA	Component
GO:0043022	ribosome binding	16705175.	IDA	Function
GO:0044322	endoplasmic reticulum quality control compartment	11408579.	IDA	Component
GO:0048408	epidermal growth factor binding	-	ISO	Function