EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148488	-	446	-	ENSMUSP00000117525	149 (aa)	-	F6ZSB7
ENSMUST00000152106	-	552	-	-	- (aa)	-	-
ENSMUST00000065793	-	1893	-	ENSMUSP00000064755	533 (aa)	-	Q61753
ENSMUST00000153694	-	735	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00260	Glycine, serine and threonine metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000053398	Phgdh	89	60.448	FBgn0032350	CG6287	98	53.231	Drosophila_melanogaster
ENSMUSG00000053398	Phgdh	100	94.559	ENSG00000092621	PHGDH	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004617	phosphoglycerate dehydrogenase activity	21873635.	IBA	Function
GO:0004617	phosphoglycerate dehydrogenase activity	-	ISO	Function
GO:0004617	phosphoglycerate dehydrogenase activity	11567059.	TAS	Function
GO:0006520	cellular amino acid metabolic process	21873635.	IBA	Process
GO:0006541	glutamine metabolic process	19114063.	IMP	Process
GO:0006544	glycine metabolic process	19114063.	IMP	Process
GO:0006563	L-serine metabolic process	19114063.	IMP	Process
GO:0006564	L-serine biosynthetic process	-	IEA	Process
GO:0006566	threonine metabolic process	19114063.	IMP	Process
GO:0008652	cellular amino acid biosynthetic process	-	IEA	Process
GO:0009448	gamma-aminobutyric acid metabolic process	19114063.	IMP	Process
GO:0010468	regulation of gene expression	19114063.	IMP	Process
GO:0016491	oxidoreductase activity	-	IEA	Function
GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	-	IEA	Function
GO:0019530	taurine metabolic process	19114063.	IMP	Process
GO:0021510	spinal cord development	19114063.	IMP	Process
GO:0021782	glial cell development	19114063.	IMP	Process
GO:0021915	neural tube development	19114063.	IMP	Process
GO:0022008	neurogenesis	19114063.	IMP	Process
GO:0031175	neuron projection development	19114063.	IMP	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0051287	NAD binding	-	IEA	Function
GO:0070314	G1 to G0 transition	19114063.	IMP	Process