EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000053536 (Gene tree)
Gene ID: 83410
Gene Symbol: Cstf2t
Alias: 64kDa|tCstF-64
Full Name: cleavage stimulation factor%2C 3' pre-RNA subunit 2%2C tau
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 3750 bases
Position: chr19:31082841-31086590
Accession: 1932622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000093831	RRM_1	PF00076.22	1.1e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000066039	-	3750	-	ENSMUSP00000093831	632 (aa)	-	Q8C7E9

Gene Model

Click here to download ENSMUSG00000053536's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000053536's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000053536	Cstf2t	99	63.318	ENSMUSG00000031256	Cstf2	86	87.342

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000053536	Cstf2t	100	87.207	ENSG00000177613	CSTF2T	82	89.168	Homo_sapiens
ENSMUSG00000053536	Cstf2t	100	85.826	ENSAMEG00000015766	CSTF2T	82	86.047	Ailuropoda_melanoleuca
ENSMUSG00000053536	Cstf2t	54	80.409	ENSANAG00000027508	-	89	80.059	Aotus_nancymaae
ENSMUSG00000053536	Cstf2t	100	84.060	ENSBTAG00000018406	CSTF2T	78	88.566	Bos_taurus
ENSMUSG00000053536	Cstf2t	54	73.529	ENSCJAG00000039083	-	93	73.529	Callithrix_jacchus
ENSMUSG00000053536	Cstf2t	54	80.588	ENSCJAG00000011554	-	97	79.706	Callithrix_jacchus
ENSMUSG00000053536	Cstf2t	80	69.080	ENSCAFG00000015567	CSTF2T	61	96.825	Canis_familiaris
ENSMUSG00000053536	Cstf2t	80	80.822	ENSCAFG00020026426	CSTF2T	77	81.055	Canis_lupus_dingo
ENSMUSG00000053536	Cstf2t	100	88.906	ENSCHIG00000016590	CSTF2T	79	88.845	Capra_hircus
ENSMUSG00000053536	Cstf2t	100	84.531	ENSTSYG00000007750	CSTF2T	96	77.353	Carlito_syrichta
ENSMUSG00000053536	Cstf2t	100	84.969	ENSCPOG00000004195	CSTF2T	85	87.524	Cavia_porcellus
ENSMUSG00000053536	Cstf2t	54	80.000	ENSCCAG00000020816	-	88	80.059	Cebus_capucinus
ENSMUSG00000053536	Cstf2t	54	80.294	ENSCATG00000041868	-	95	80.588	Cercocebus_atys
ENSMUSG00000053536	Cstf2t	100	86.371	ENSCLAG00000017916	CSTF2T	83	87.547	Chinchilla_lanigera
ENSMUSG00000053536	Cstf2t	100	87.051	ENSCSAG00000018437	CSTF2T	82	89.168	Chlorocebus_sabaeus
ENSMUSG00000053536	Cstf2t	53	100.000	ENSCHOG00000011888	-	53	100.000	Choloepus_hoffmanni
ENSMUSG00000053536	Cstf2t	53	80.000	ENSCANG00000005843	-	87	80.625	Colobus_angolensis_palliatus
ENSMUSG00000053536	Cstf2t	100	94.795	ENSCGRG00001003222	Cstf2t	80	96.660	Cricetulus_griseus_chok1gshd
ENSMUSG00000053536	Cstf2t	100	95.886	ENSCGRG00000008682	Cstf2t	100	95.886	Cricetulus_griseus_crigri
ENSMUSG00000053536	Cstf2t	100	86.164	ENSDNOG00000003283	CSTF2T	82	88.281	Dasypus_novemcinctus
ENSMUSG00000053536	Cstf2t	80	90.157	ENSDORG00000011245	Cstf2t	80	90.196	Dipodomys_ordii
ENSMUSG00000053536	Cstf2t	100	87.969	ENSEASG00005012929	CSTF2T	81	88.760	Equus_asinus_asinus
ENSMUSG00000053536	Cstf2t	100	88.924	ENSECAG00000004701	CSTF2T	80	88.760	Equus_caballus
ENSMUSG00000053536	Cstf2t	83	89.394	ENSELUG00000004079	-	77	88.265	Esox_lucius
ENSMUSG00000053536	Cstf2t	100	87.812	ENSFCAG00000046300	CSTF2T	82	88.953	Felis_catus
ENSMUSG00000053536	Cstf2t	100	88.235	ENSFDAG00000021170	CSTF2T	100	87.307	Fukomys_damarensis
ENSMUSG00000053536	Cstf2t	100	86.115	ENSGGOG00000042388	-	83	88.395	Gorilla_gorilla
ENSMUSG00000053536	Cstf2t	100	86.115	ENSGGOG00000036416	-	83	88.395	Gorilla_gorilla
ENSMUSG00000053536	Cstf2t	80	85.824	ENSHGLG00000015478	CSTF2T	81	86.069	Heterocephalus_glaber_female
ENSMUSG00000053536	Cstf2t	80	85.824	ENSHGLG00100000336	CSTF2T	81	86.069	Heterocephalus_glaber_male
ENSMUSG00000053536	Cstf2t	100	88.031	ENSSTOG00000026303	CSTF2T	83	90.234	Ictidomys_tridecemlineatus
ENSMUSG00000053536	Cstf2t	100	76.875	ENSLAFG00000002058	CSTF2T	100	78.906	Loxodonta_africana
ENSMUSG00000053536	Cstf2t	53	80.180	ENSMFAG00000042009	-	93	80.938	Macaca_fascicularis
ENSMUSG00000053536	Cstf2t	54	79.765	ENSMMUG00000042906	-	99	80.059	Macaca_mulatta
ENSMUSG00000053536	Cstf2t	53	80.180	ENSMNEG00000031410	-	93	80.938	Macaca_nemestrina
ENSMUSG00000053536	Cstf2t	100	95.253	ENSMAUG00000006359	Cstf2t	100	95.253	Mesocricetus_auratus
ENSMUSG00000053536	Cstf2t	100	81.761	ENSMICG00000030551	-	100	82.051	Microcebus_murinus
ENSMUSG00000053536	Cstf2t	100	85.047	ENSMICG00000000867	-	83	89.768	Microcebus_murinus
ENSMUSG00000053536	Cstf2t	100	89.905	ENSMOCG00000020428	Cstf2t	81	94.521	Microtus_ochrogaster
ENSMUSG00000053536	Cstf2t	52	75.769	ENSMALG00000008842	-	98	79.032	Monopterus_albus
ENSMUSG00000053536	Cstf2t	100	97.017	MGP_CAROLIEiJ_G0022872	Cstf2t	100	97.017	Mus_caroli
ENSMUSG00000053536	Cstf2t	100	96.894	MGP_PahariEiJ_G0014365	Cstf2t	100	96.894	Mus_pahari
ENSMUSG00000053536	Cstf2t	100	98.744	MGP_SPRETEiJ_G0023790	Cstf2t	100	98.744	Mus_spretus
ENSMUSG00000053536	Cstf2t	100	86.250	ENSMPUG00000020141	CSTF2T	83	88.566	Mustela_putorius_furo
ENSMUSG00000053536	Cstf2t	100	87.519	ENSMLUG00000011187	-	78	87.719	Myotis_lucifugus
ENSMUSG00000053536	Cstf2t	100	78.336	ENSMLUG00000027140	-	84	81.553	Myotis_lucifugus
ENSMUSG00000053536	Cstf2t	100	90.079	ENSNGAG00000003304	Cstf2t	83	93.164	Nannospalax_galili
ENSMUSG00000053536	Cstf2t	100	83.385	ENSNLEG00000012025	CSTF2T	83	84.808	Nomascus_leucogenys
ENSMUSG00000053536	Cstf2t	100	81.874	ENSODEG00000012386	CSTF2T	100	79.570	Octodon_degus
ENSMUSG00000053536	Cstf2t	81	85.185	ENSOCUG00000004647	-	100	95.161	Oryctolagus_cuniculus
ENSMUSG00000053536	Cstf2t	100	87.031	ENSOGAG00000014565	CSTF2T	83	89.535	Otolemur_garnettii
ENSMUSG00000053536	Cstf2t	100	84.756	ENSOARG00000019124	-	80	88.566	Ovis_aries
ENSMUSG00000053536	Cstf2t	100	86.433	ENSOARG00000013688	-	78	88.566	Ovis_aries
ENSMUSG00000053536	Cstf2t	53	77.313	ENSPPAG00000032242	-	91	77.812	Pan_paniscus
ENSMUSG00000053536	Cstf2t	100	87.656	ENSPPRG00000018659	CSTF2T	82	88.566	Panthera_pardus
ENSMUSG00000053536	Cstf2t	100	85.156	ENSPTIG00000021145	CSTF2T	82	86.628	Panthera_tigris_altaica
ENSMUSG00000053536	Cstf2t	53	77.313	ENSPTRG00000043097	-	91	77.812	Pan_troglodytes
ENSMUSG00000053536	Cstf2t	53	80.180	ENSPANG00000029734	-	93	80.938	Papio_anubis
ENSMUSG00000053536	Cstf2t	99	51.274	ENSPFOG00000016756	CSTF2T	83	83.636	Poecilia_formosa
ENSMUSG00000053536	Cstf2t	100	88.456	ENSPPYG00000002441	CSTF2T	81	89.168	Pongo_abelii
ENSMUSG00000053536	Cstf2t	82	85.255	ENSPCAG00000000046	CSTF2T	82	87.669	Procavia_capensis
ENSMUSG00000053536	Cstf2t	99	85.290	ENSPCOG00000010982	CSTF2T	83	88.953	Propithecus_coquereli
ENSMUSG00000053536	Cstf2t	100	86.250	ENSPVAG00000006274	CSTF2T	83	88.566	Pteropus_vampyrus
ENSMUSG00000053536	Cstf2t	100	90.596	ENSRNOG00000050289	Cstf2t	82	93.204	Rattus_norvegicus
ENSMUSG00000053536	Cstf2t	100	86.115	ENSRBIG00000029324	CSTF2T	91	80.625	Rhinopithecus_bieti
ENSMUSG00000053536	Cstf2t	100	86.271	ENSRROG00000042507	CSTF2T	91	80.938	Rhinopithecus_roxellana
ENSMUSG00000053536	Cstf2t	100	86.719	ENSSBOG00000022638	CSTF2T	93	80.059	Saimiri_boliviensis_boliviensis
ENSMUSG00000053536	Cstf2t	70	89.811	ENSSARG00000002013	-	62	98.544	Sorex_araneus
ENSMUSG00000053536	Cstf2t	100	88.438	ENSSSCG00000010430	CSTF2T	82	90.310	Sus_scrofa
ENSMUSG00000053536	Cstf2t	91	74.648	ENSTRUG00000004323	-	51	88.889	Takifugu_rubripes
ENSMUSG00000053536	Cstf2t	100	72.344	ENSTBEG00000014379	CSTF2T	80	75.388	Tupaia_belangeri
ENSMUSG00000053536	Cstf2t	100	88.125	ENSTTRG00000003341	CSTF2T	82	88.760	Tursiops_truncatus
ENSMUSG00000053536	Cstf2t	100	86.503	ENSUMAG00000011141	CSTF2T	79	88.760	Ursus_maritimus
ENSMUSG00000053536	Cstf2t	61	96.020	ENSVVUG00000002575	CSTF2T	64	100.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	11113135.	IDA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0006378	mRNA polyadenylation	11113135.	TAS	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0031124	mRNA 3'-end processing	-	IEA	Process
GO:0098789	pre-mRNA cleavage required for polyadenylation	21873635.	IBA	Process