EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000205384	-	576	-	ENSMUSP00000146301	192 (aa)	-	A0A0U1RQ95
ENSMUST00000205823	-	590	-	ENSMUSP00000145983	55 (aa)	-	A0A0U1RPH4
ENSMUST00000206692	-	1400	-	ENSMUSP00000145603	365 (aa)	-	A0A0U1RNK6
ENSMUST00000206962	-	646	-	-	- (aa)	-	-
ENSMUST00000206904	-	673	-	ENSMUSP00000146319	36 (aa)	-	A0A0U1RQB0
ENSMUST00000206783	-	755	-	-	- (aa)	-	-
ENSMUST00000205335	-	3387	-	ENSMUSP00000145696	362 (aa)	-	A0A0U1RNT6
ENSMUST00000206900	-	305	-	-	- (aa)	-	-
ENSMUST00000059472	-	2804	-	ENSMUSP00000087118	395 (aa)	-	Q3THS6
ENSMUST00000206368	-	762	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00270	Cysteine and methionine metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01230	Biosynthesis of amino acids	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000053907	Mat2a	95	68.116	WBGene00008205	sams-1	94	67.905	Caenorhabditis_elegans
ENSMUSG00000053907	Mat2a	100	84.573	ENSMUSG00000037798	Mat1a	100	84.343	Mus_musculus
ENSMUSG00000053907	Mat2a	96	69.364	YDR502C	SAM2	99	68.074	Saccharomyces_cerevisiae
ENSMUSG00000053907	Mat2a	96	69.452	YLR180W	SAM1	99	68.421	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0004478	methionine adenosyltransferase activity	21873635.	IBA	Function
GO:0004478	methionine adenosyltransferase activity	12023972.	IDA	Function
GO:0004478	methionine adenosyltransferase activity	-	ISO	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006556	S-adenosylmethionine biosynthetic process	12023972.	IDA	Process
GO:0006556	S-adenosylmethionine biosynthetic process	-	ISO	Process
GO:0006730	one-carbon metabolic process	-	IEA	Process
GO:0007623	circadian rhythm	-	ISO	Process
GO:0009725	response to hormone	-	ISO	Process
GO:0016597	amino acid binding	-	ISO	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0034214	protein hexamerization	-	ISO	Process
GO:0042493	response to drug	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0048269	methionine adenosyltransferase complex	21873635.	IBA	Component
GO:0048269	methionine adenosyltransferase complex	-	ISO	Component
GO:0051291	protein heterooligomerization	-	ISO	Process
GO:0051591	response to cAMP	-	ISO	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process