EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000054455 (Gene tree)
Gene ID: 56491
Gene Symbol: Vapb
Alias: D2Abb2e|VAMP-associated protein 33b|VAP33b
Full Name: vesicle-associated membrane protein%2C associated protein B and C
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 46826
Position: chr2: 173737511-173784336
Accession: 1928744
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154306	-	527	-	-	- (aa)	-	-
ENSMUST00000067530	-	7029	-	ENSMUSP00000064699	243 (aa)	-	Q8BH80

Gene Model

Click here to download ENSMUSG00000054455's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04979	Cholesterol metabolism	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000054455's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000054455	Vapb	100	90.123	ENSG00000124164	VAPB	99	97.143	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000139	Golgi membrane	-	ISO	Component
GO:0005515	protein binding	24251978.	IPI	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005789	endoplasmic reticulum membrane	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0006874	cellular calcium ion homeostasis	-	ISO	Process
GO:0006888	ER to Golgi vesicle-mediated transport	-	ISO	Process
GO:0006986	response to unfolded protein	-	IEA	Process
GO:0007029	endoplasmic reticulum organization	-	ISO	Process
GO:0008017	microtubule binding	-	ISO	Function
GO:0016020	membrane	14561759.	IDA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0019048	modulation by virus of host morphology or physiology	-	ISO	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0030968	endoplasmic reticulum unfolded protein response	-	ISO	Process
GO:0033149	FFAT motif binding	-	ISO	Function
GO:0036498	IRE1-mediated unfolded protein response	-	ISO	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0044790	negative regulation by host of viral release from host cell	-	ISO	Process
GO:0044791	positive regulation by host of viral release from host cell	-	ISO	Process
GO:0044828	negative regulation by host of viral genome replication	-	ISO	Process
GO:0044829	positive regulation by host of viral genome replication	-	ISO	Process
GO:0044830	modulation by host of viral RNA genome replication	-	ISO	Process
GO:0045070	positive regulation of viral genome replication	-	ISO	Process
GO:0046725	negative regulation by virus of viral protein levels in host cell	-	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0048487	beta-tubulin binding	-	ISO	Function
GO:0090114	COPII-coated vesicle budding	-	ISO	Process