EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000054582 (Gene tree)
Gene ID
381404
Gene Symbol
Pabpc1l
Alias
1810053B01Rik|ePAB
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
25089 bases
Position
chr2:164025450-164050538
Accession
1922908
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000096701PABPPF00658.182.4e-2311
ENSMUSP00000096701RRM_5PF13893.64.2e-1713
ENSMUSP00000096701RRM_5PF13893.64.2e-1723
ENSMUSP00000096701RRM_5PF13893.64.2e-1733
ENSMUSP00000096701RRM_1PF00076.224.5e-9014
ENSMUSP00000096701RRM_1PF00076.224.5e-9024
ENSMUSP00000096701RRM_1PF00076.224.5e-9034
ENSMUSP00000096701RRM_1PF00076.224.5e-9044
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000156087-438--- (aa)--
ENSMUST00000067715-2354XM_006499825ENSMUSP00000096701607 (aa)XP_006499888A2A5N3
ENSMUST00000126272-750--- (aa)--
ENSMUST00000150523-328--- (aa)--
ENSMUST00000141671-617--- (aa)--
Gene Model
Click here to download ENSMUSG00000054582's gene model file
Pathways
Pathway IDPathway NameSource
mmu03013RNA transportKEGG
mmu03015mRNA surveillance pathwayKEGG
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000054582's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000054582Pabpc1l5960.736ENSMUSG00000090919Pabpc4l9560.736
ENSMUSG00000054582Pabpc1l5930.818ENSMUSG00000039607Rbms37730.818
ENSMUSG00000054582Pabpc1l6434.940ENSMUSG00000008489Elavl29234.940
ENSMUSG00000054582Pabpc1l6457.022ENSMUSG00000034732Pabpc59656.944
ENSMUSG00000054582Pabpc1l9961.201ENSMUSG00000011257Pabpc410075.595
ENSMUSG00000054582Pabpc1l9956.378ENSMUSG00000046173Pabpc69756.535
ENSMUSG00000054582Pabpc1l6035.484ENSMUSG00000029594Rbm197436.066
ENSMUSG00000054582Pabpc1l6338.889ENSMUSG00000003410Elavl38030.488
ENSMUSG00000054582Pabpc1l5630.864ENSMUSG00000007836Hnrnpa05031.613
ENSMUSG00000054582Pabpc1l5734.118ENSMUSG00000028137Celf36732.857
ENSMUSG00000054582Pabpc1l6233.735ENSMUSG00000028546Elavl410031.169
ENSMUSG00000054582Pabpc1l9956.938ENSMUSG00000051732Pabpc29856.938
ENSMUSG00000054582Pabpc1l5938.095ENSMUSG00000071337Tia18738.095
ENSMUSG00000054582Pabpc1l5339.759ENSMUSG00000045193Cirbp9139.759
ENSMUSG00000054582Pabpc1l9961.478ENSMUSG00000022283Pabpc19983.761
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000054582Pabpc1l9976.797ENSG00000101104PABPC1L9984.568Homo_sapiens
ENSMUSG00000054582Pabpc1l9959.936ENSAPOG00000010842pabpc1l9860.256Acanthochromis_polyacanthus
ENSMUSG00000054582Pabpc1l9968.837ENSAMEG00000004099PABPC1L9969.592Ailuropoda_melanoleuca
ENSMUSG00000054582Pabpc1l9960.669ENSACIG00000021004-9965.287Amphilophus_citrinellus
ENSMUSG00000054582Pabpc1l9958.870ENSAOCG00000006167-9959.779Amphiprion_ocellaris
ENSMUSG00000054582Pabpc1l9960.480ENSAPEG00000010558-9875.253Amphiprion_percula
ENSMUSG00000054582Pabpc1l9962.036ENSATEG00000007428pabpc1l9961.836Anabas_testudineus
ENSMUSG00000054582Pabpc1l9866.613ENSAPLG00000008415PABPC1L9966.613Anas_platyrhynchos
ENSMUSG00000054582Pabpc1l10064.968ENSACAG00000011841PABPC1L9964.968Anolis_carolinensis
ENSMUSG00000054582Pabpc1l9976.961ENSANAG00000026826PABPC1L9976.961Aotus_nancymaae
ENSMUSG00000054582Pabpc1l9960.350ENSACLG00000024791pabpc1l9960.287Astatotilapia_calliptera
ENSMUSG00000054582Pabpc1l9961.381ENSAMXG00000013552pabpc1l9961.381Astyanax_mexicanus
ENSMUSG00000054582Pabpc1l6767.972ENSBTAG00000016849PABPC1L8667.972Bos_taurus
ENSMUSG00000054582Pabpc1l5988.095ENSBTAG00000055300-10088.095Bos_taurus
ENSMUSG00000054582Pabpc1l9976.634ENSCJAG00000017628PABPC1L9976.634Callithrix_jacchus
ENSMUSG00000054582Pabpc1l6070.115ENSCJAG00000038506-10070.115Callithrix_jacchus
ENSMUSG00000054582Pabpc1l9967.081ENSCAFG00000009573PABPC1L9967.081Canis_familiaris
ENSMUSG00000054582Pabpc1l10075.851ENSCAFG00020013828PABPC1L9975.851Canis_lupus_dingo
ENSMUSG00000054582Pabpc1l9874.295ENSCHIG00000025759PABPC1L8774.609Capra_hircus
ENSMUSG00000054582Pabpc1l9975.817ENSTSYG00000006645PABPC1L9975.817Carlito_syrichta
ENSMUSG00000054582Pabpc1l9975.376ENSCAPG00000014519PABPC1L9975.376Cavia_aperea
ENSMUSG00000054582Pabpc1l9976.183ENSCPOG00000013633PABPC1L9976.183Cavia_porcellus
ENSMUSG00000054582Pabpc1l9976.797ENSCCAG00000023338PABPC1L9976.797Cebus_capucinus
ENSMUSG00000054582Pabpc1l9977.288ENSCATG00000034065PABPC1L9977.288Cercocebus_atys
ENSMUSG00000054582Pabpc1l9976.672ENSCLAG00000005298PABPC1L9976.672Chinchilla_lanigera
ENSMUSG00000054582Pabpc1l9977.451ENSCSAG00000014242PABPC1L9977.451Chlorocebus_sabaeus
ENSMUSG00000054582Pabpc1l7274.492ENSCPBG00000017755-9974.492Chrysemys_picta_bellii
ENSMUSG00000054582Pabpc1l5475.000ENSCPBG00000007810-8175.000Chrysemys_picta_bellii
ENSMUSG00000054582Pabpc1l9747.059ENSCING00000002796-9748.255Ciona_intestinalis
ENSMUSG00000054582Pabpc1l9953.438ENSCSAVG00000003102-10076.712Ciona_savignyi
ENSMUSG00000054582Pabpc1l9956.013ENSCSAVG00000004246-9855.806Ciona_savignyi
ENSMUSG00000054582Pabpc1l9973.269ENSCANG00000037530PABPC1L9973.269Colobus_angolensis_palliatus
ENSMUSG00000054582Pabpc1l10091.598ENSCGRG00001021938Pabpc1l9991.598Cricetulus_griseus_chok1gshd
ENSMUSG00000054582Pabpc1l10091.598ENSCGRG00000007946Pabpc1l9991.598Cricetulus_griseus_crigri
ENSMUSG00000054582Pabpc1l9959.211ENSCSEG00000021295pabpc1l9959.211Cynoglossus_semilaevis
ENSMUSG00000054582Pabpc1l9961.675ENSCVAG00000015943-9978.030Cyprinodon_variegatus
ENSMUSG00000054582Pabpc1l9962.041ENSDARG00000002597pabpc1l8880.000Danio_rerio
ENSMUSG00000054582Pabpc1l9976.307ENSDNOG00000048450PABPC1L9976.307Dasypus_novemcinctus
ENSMUSG00000054582Pabpc1l9978.431ENSDORG00000001067Pabpc1l9978.431Dipodomys_ordii
ENSMUSG00000054582Pabpc1l9482.520ENSETEG00000009969PABPC1L7182.520Echinops_telfairi
ENSMUSG00000054582Pabpc1l5768.000ENSEASG00005023407-7368.000Equus_asinus_asinus
ENSMUSG00000054582Pabpc1l6086.310ENSEASG00005023408-10086.310Equus_asinus_asinus
ENSMUSG00000054582Pabpc1l6970.916ENSECAG00000040139-8970.916Equus_caballus
ENSMUSG00000054582Pabpc1l10072.771ENSEEUG00000005978PABPC1L9972.771Erinaceus_europaeus
ENSMUSG00000054582Pabpc1l9961.033ENSELUG00000001811pabpc1l9961.033Esox_lucius
ENSMUSG00000054582Pabpc1l10076.013ENSFCAG00000011692PABPC1L9976.013Felis_catus
ENSMUSG00000054582Pabpc1l8169.643ENSFALG00000005372PABPC1L8569.643Ficedula_albicollis
ENSMUSG00000054582Pabpc1l9973.409ENSFDAG00000008291PABPC1L9973.409Fukomys_damarensis
ENSMUSG00000054582Pabpc1l9961.331ENSFHEG00000003398pabpc1l9961.331Fundulus_heteroclitus
ENSMUSG00000054582Pabpc1l10060.968ENSGMOG00000004437pabpc1l9961.415Gadus_morhua
ENSMUSG00000054582Pabpc1l9961.840ENSGALG00000004123PABPC1L9976.499Gallus_gallus
ENSMUSG00000054582Pabpc1l9958.752ENSGAFG00000021057pabpc1l9958.752Gambusia_affinis
ENSMUSG00000054582Pabpc1l9960.252ENSGACG00000002792pabpc1l10060.252Gasterosteus_aculeatus
ENSMUSG00000054582Pabpc1l9967.412ENSGAGG00000000589PABPC1L9867.412Gopherus_agassizii
ENSMUSG00000054582Pabpc1l9976.961ENSGGOG00000004584PABPC1L9976.961Gorilla_gorilla
ENSMUSG00000054582Pabpc1l9960.191ENSHBUG00000006134pabpc1l9960.191Haplochromis_burtoni
ENSMUSG00000054582Pabpc1l9976.346ENSHGLG00000008434PABPC1L9976.346Heterocephalus_glaber_female
ENSMUSG00000054582Pabpc1l9976.346ENSHGLG00100012151PABPC1L9976.346Heterocephalus_glaber_male
ENSMUSG00000054582Pabpc1l6077.515ENSHGLG00100019506-9577.515Heterocephalus_glaber_male
ENSMUSG00000054582Pabpc1l9961.730ENSHCOG00000009270pabpc1l9961.730Hippocampus_comes
ENSMUSG00000054582Pabpc1l5263.636ENSIPUG00000005537-9863.636Ictalurus_punctatus
ENSMUSG00000054582Pabpc1l9962.215ENSIPUG00000012602pabpc1l9961.755Ictalurus_punctatus
ENSMUSG00000054582Pabpc1l6654.271ENSIPUG00000006780-9854.271Ictalurus_punctatus
ENSMUSG00000054582Pabpc1l6158.046ENSIPUG00000006760-9158.046Ictalurus_punctatus
ENSMUSG00000054582Pabpc1l9977.941ENSSTOG00000003739PABPC1L9977.941Ictidomys_tridecemlineatus
ENSMUSG00000054582Pabpc1l9976.199ENSJJAG00000022406Pabpc1l9973.026Jaculus_jaculus
ENSMUSG00000054582Pabpc1l9961.588ENSKMAG00000016847pabpc1l9961.588Kryptolebias_marmoratus
ENSMUSG00000054582Pabpc1l9960.591ENSLBEG00000010084pabpc1l9960.591Labrus_bergylta
ENSMUSG00000054582Pabpc1l9962.362ENSLACG00000005762PABPC1L9964.652Latimeria_chalumnae
ENSMUSG00000054582Pabpc1l10061.746ENSLOCG00000007519pabpc1l9961.746Lepisosteus_oculatus
ENSMUSG00000054582Pabpc1l9973.878ENSLAFG00000003553PABPC1L10073.878Loxodonta_africana
ENSMUSG00000054582Pabpc1l9977.124ENSMFAG00000040365PABPC1L9977.124Macaca_fascicularis
ENSMUSG00000054582Pabpc1l9975.081ENSMNEG00000032298PABPC1L9975.081Macaca_nemestrina
ENSMUSG00000054582Pabpc1l9977.288ENSMLEG00000043139PABPC1L9977.288Mandrillus_leucophaeus
ENSMUSG00000054582Pabpc1l9760.778ENSMAMG00000011854pabpc1l9360.371Mastacembelus_armatus
ENSMUSG00000054582Pabpc1l9960.350ENSMZEG00005023713pabpc1l9960.287Maylandia_zebra
ENSMUSG00000054582Pabpc1l9966.773ENSMGAG00000003674PABPC1L9966.773Meleagris_gallopavo
ENSMUSG00000054582Pabpc1l10089.127ENSMOCG00000013186Pabpc1l9989.127Microtus_ochrogaster
ENSMUSG00000054582Pabpc1l9960.800ENSMMOG00000020574-9077.692Mola_mola
ENSMUSG00000054582Pabpc1l9771.000ENSMODG00000016198PABPC1L9670.537Monodelphis_domestica
ENSMUSG00000054582Pabpc1l9957.895ENSMALG00000021622pabpc1l10059.807Monopterus_albus
ENSMUSG00000054582Pabpc1l10099.506MGP_CAROLIEiJ_G0024627Pabpc1l10099.506Mus_caroli
ENSMUSG00000054582Pabpc1l9998.188MGP_PahariEiJ_G0026071Pabpc1l9998.188Mus_pahari
ENSMUSG00000054582Pabpc1l10099.835MGP_SPRETEiJ_G0025549Pabpc1l10099.835Mus_spretus
ENSMUSG00000054582Pabpc1l10073.962ENSMPUG00000017646PABPC1L9973.962Mustela_putorius_furo
ENSMUSG00000054582Pabpc1l9870.968ENSMLUG00000006324PABPC1L9770.968Myotis_lucifugus
ENSMUSG00000054582Pabpc1l9987.769ENSNGAG00000010458Pabpc1l9987.769Nannospalax_galili
ENSMUSG00000054582Pabpc1l9960.320ENSNBRG00000016633pabpc1l9963.529Neolamprologus_brichardi
ENSMUSG00000054582Pabpc1l8967.754ENSMEUG00000007905-8967.754Notamacropus_eugenii
ENSMUSG00000054582Pabpc1l9975.204ENSOPRG00000011846PABPC1L9975.204Ochotona_princeps
ENSMUSG00000054582Pabpc1l9969.901ENSODEG00000015482PABPC1L9969.901Octodon_degus
ENSMUSG00000054582Pabpc1l5772.185ENSODEG00000002920-9172.185Octodon_degus
ENSMUSG00000054582Pabpc1l9960.669ENSONIG00000017314pabpc1l9960.669Oreochromis_niloticus
ENSMUSG00000054582Pabpc1l9060.250ENSOANG00000015793-10060.250Ornithorhynchus_anatinus
ENSMUSG00000054582Pabpc1l9970.706ENSOCUG00000003005PABPC1L9970.706Oryctolagus_cuniculus
ENSMUSG00000054582Pabpc1l9960.287ENSORLG00000010322pabpc1l9968.421Oryzias_latipes
ENSMUSG00000054582Pabpc1l9960.165ENSORLG00020021193pabpc1l9968.421Oryzias_latipes_hni
ENSMUSG00000054582Pabpc1l9960.772ENSORLG00015017018pabpc1l9868.421Oryzias_latipes_hsok
ENSMUSG00000054582Pabpc1l9957.489ENSOMEG00000010789pabpc1l9957.489Oryzias_melastigma
ENSMUSG00000054582Pabpc1l9974.682ENSOGAG00000032999PABPC1L9974.682Otolemur_garnettii
ENSMUSG00000054582Pabpc1l9975.000ENSOARG00000004578PABPC1L9975.000Ovis_aries
ENSMUSG00000054582Pabpc1l9976.634ENSPPAG00000039677PABPC1L9976.634Pan_paniscus
ENSMUSG00000054582Pabpc1l6273.457ENSPPRG00000019327-9873.457Panthera_pardus
ENSMUSG00000054582Pabpc1l9976.645ENSPTIG00000006524PABPC1L9976.645Panthera_tigris_altaica
ENSMUSG00000054582Pabpc1l6384.259ENSPTRG00000013531PABPC1L9984.259Pan_troglodytes
ENSMUSG00000054582Pabpc1l9977.288ENSPANG00000018788PABPC1L9977.288Papio_anubis
ENSMUSG00000054582Pabpc1l5475.573ENSPKIG00000016810-9375.573Paramormyrops_kingsleyae
ENSMUSG00000054582Pabpc1l9963.124ENSPKIG00000007322pabpc1l9963.124Paramormyrops_kingsleyae
ENSMUSG00000054582Pabpc1l6776.271ENSPSIG00000013289PABPC1L9876.271Pelodiscus_sinensis
ENSMUSG00000054582Pabpc1l7064.433ENSPMGG00000023121-9064.433Periophthalmus_magnuspinnatus
ENSMUSG00000054582Pabpc1l6272.093ENSPMGG00000023117pabpc1l9772.093Periophthalmus_magnuspinnatus
ENSMUSG00000054582Pabpc1l10091.269ENSPEMG00000020671Pabpc1l9991.269Peromyscus_maniculatus_bairdii
ENSMUSG00000054582Pabpc1l9962.136ENSPFOG00000013241pabpc1l9962.136Poecilia_formosa
ENSMUSG00000054582Pabpc1l5478.462ENSPLAG00000023686-9278.462Poecilia_latipinna
ENSMUSG00000054582Pabpc1l9961.920ENSPLAG00000017490-9961.920Poecilia_latipinna
ENSMUSG00000054582Pabpc1l9961.798ENSPMEG00000007677pabpc1l9961.477Poecilia_mexicana
ENSMUSG00000054582Pabpc1l5478.462ENSPMEG00000009185-8878.462Poecilia_mexicana
ENSMUSG00000054582Pabpc1l6771.429ENSPREG00000015886pabpc1l9971.429Poecilia_reticulata
ENSMUSG00000054582Pabpc1l9977.124ENSPPYG00000011042PABPC1L9977.124Pongo_abelii
ENSMUSG00000054582Pabpc1l6378.125ENSPCAG00000011787-7578.125Procavia_capensis
ENSMUSG00000054582Pabpc1l9974.510ENSPCOG00000020630PABPC1L9974.510Propithecus_coquereli
ENSMUSG00000054582Pabpc1l10073.582ENSPVAG00000012663PABPC1L9973.582Pteropus_vampyrus
ENSMUSG00000054582Pabpc1l9959.706ENSPNYG00000004101pabpc1l9963.529Pundamilia_nyererei
ENSMUSG00000054582Pabpc1l9954.874ENSPNAG00000021248pabpc1l9954.874Pygocentrus_nattereri
ENSMUSG00000054582Pabpc1l9993.058ENSRNOG00000012750Pabpc1l9993.058Rattus_norvegicus
ENSMUSG00000054582Pabpc1l9976.961ENSRBIG00000035381PABPC1L9976.961Rhinopithecus_bieti
ENSMUSG00000054582Pabpc1l9976.961ENSRROG00000044498PABPC1L9976.961Rhinopithecus_roxellana
ENSMUSG00000054582Pabpc1l9977.288ENSSBOG00000009532-9977.288Saimiri_boliviensis_boliviensis
ENSMUSG00000054582Pabpc1l9966.189ENSSHAG00000011446PABPC1L10066.189Sarcophilus_harrisii
ENSMUSG00000054582Pabpc1l9963.317ENSSFOG00015017304pabpc1l9963.317Scleropages_formosus
ENSMUSG00000054582Pabpc1l9960.543ENSSMAG00000010516pabpc1l9877.519Scophthalmus_maximus
ENSMUSG00000054582Pabpc1l9960.925ENSSDUG00000014743pabpc1l9960.925Seriola_dumerili
ENSMUSG00000054582Pabpc1l9760.531ENSSLDG00000006981pabpc1l9869.863Seriola_lalandi_dorsalis
ENSMUSG00000054582Pabpc1l10065.452ENSSPUG00000004233PABPC1L9965.452Sphenodon_punctatus
ENSMUSG00000054582Pabpc1l9959.217ENSSPAG00000017137pabpc1l9959.217Stegastes_partitus
ENSMUSG00000054582Pabpc1l9974.510ENSSSCG00000007382PABPC1L9974.510Sus_scrofa
ENSMUSG00000054582Pabpc1l9965.777ENSTGUG00000005114PABPC1L9965.777Taeniopygia_guttata
ENSMUSG00000054582Pabpc1l9760.611ENSTRUG00000011085pabpc1l9460.434Takifugu_rubripes
ENSMUSG00000054582Pabpc1l9958.991ENSTNIG00000017903pabpc1l9858.991Tetraodon_nigroviridis
ENSMUSG00000054582Pabpc1l9585.616ENSTBEG00000002851PABPC1L7985.616Tupaia_belangeri
ENSMUSG00000054582Pabpc1l9474.182ENSTTRG00000007618PABPC1L9674.087Tursiops_truncatus
ENSMUSG00000054582Pabpc1l10072.934ENSUAMG00000017682PABPC1L9972.934Ursus_americanus
ENSMUSG00000054582Pabpc1l6783.944ENSUMAG00000025436PABPC1L9183.944Ursus_maritimus
ENSMUSG00000054582Pabpc1l9982.692ENSVVUG00000018939PABPC1L9982.692Vulpes_vulpes
ENSMUSG00000054582Pabpc1l10060.383ENSXETG00000022831pabpc1l9960.383Xenopus_tropicalis
ENSMUSG00000054582Pabpc1l9961.812ENSXCOG00000005459pabpc1l9974.468Xiphophorus_couchianus
ENSMUSG00000054582Pabpc1l9961.760ENSXMAG00000017135pabpc1l9961.760Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001556oocyte maturation26134869.IDAProcess
GO:0001556oocyte maturation22621333.IMPProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0006338chromatin remodeling26134869.IDAProcess
GO:0006338chromatin remodeling26134869.IMPProcess
GO:0006378mRNA polyadenylation22621333.IMPProcess
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008143poly(A) binding26134869.TASFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:0048096chromatin-mediated maintenance of transcription26134869.IMPProcess
GO:0051647nucleus localization26134869.IMPProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us