EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000054717 (Gene tree)
Gene ID: 97165
Gene Symbol: Hmgb2
Alias: HMG-2|Hmg2
Full Name: high mobility group box 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 4093
Position: chr8: 57511907-57515999
Accession: 96157
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000210871	-	414	-	ENSMUSP00000147297	99 (aa)	-	A0A1B0GQX9
ENSMUST00000067925	-	2628	XM_006509524	ENSMUSP00000065940	210 (aa)	XP_006509587	P30681
ENSMUST00000211198	-	660	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000054717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000054717's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000054717	Hmgb2	100	98.990	ENSG00000164104	HMGB2	100	97.761	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0000790	nuclear chromatin	23495099.	IDA	Component
GO:0000793	condensed chromosome	-	ISO	Component
GO:0001158	enhancer sequence-specific DNA binding	23495099.	IDA	Function
GO:0001938	positive regulation of endothelial cell proliferation	-	ISO	Process
GO:0002376	immune system process	-	IEA	Process
GO:0002437	inflammatory response to antigenic stimulus	25306442.	IMP	Process
GO:0003677	DNA binding	-	ISO	Function
GO:0003684	damaged DNA binding	-	ISO	Function
GO:0003690	double-stranded DNA binding	19890330.	IDA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0005515	protein binding	19805379.	IPI	Function
GO:0005576	extracellular region	-	IEA	Component
GO:0005615	extracellular space	25306442.	IDA	Component
GO:0005615	extracellular space	-	ISO	Component
GO:0005623	cell	-	ISO	Component
GO:0005634	nucleus	11262228.	IC	Component
GO:0005634	nucleus	25306442.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	25306442.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006310	DNA recombination	21873635.	IBA	Process
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006357	regulation of transcription by RNA polymerase II	7720710.	IDA	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0006935	chemotaxis	-	IEA	Process
GO:0006954	inflammatory response	-	IEA	Process
GO:0007283	spermatogenesis	11262228.	IMP	Process
GO:0007289	spermatid nucleus differentiation	16765935.	IMP	Process
GO:0008134	transcription factor binding	21873635.	IBA	Function
GO:0008134	transcription factor binding	23495099.	IDA	Function
GO:0008301	DNA binding, bending	21873635.	IBA	Function
GO:0008301	DNA binding, bending	-	ISO	Function
GO:0008584	male gonad development	11262228.	IMP	Process
GO:0010628	positive regulation of gene expression	23495099.	IDA	Process
GO:0010629	negative regulation of gene expression	23495099.	IDA	Process
GO:0019904	protein domain specific binding	7720710.	IPI	Function
GO:0032075	positive regulation of nuclease activity	-	ISO	Process
GO:0032496	response to lipopolysaccharide	25306442.	IMP	Process
GO:0032728	positive regulation of interferon-beta production	19890330.	IMP	Process
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042056	chemoattractant activity	-	ISO	Function
GO:0043388	positive regulation of DNA binding	7720710.	IDA	Process
GO:0043388	positive regulation of DNA binding	-	ISO	Process
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045087	innate immune response	-	IEA	Process
GO:0045089	positive regulation of innate immune response	21873635.	IBA	Process
GO:0045089	positive regulation of innate immune response	19890330.	IMP	Process
GO:0045648	positive regulation of erythrocyte differentiation	-	ISO	Process
GO:0045654	positive regulation of megakaryocyte differentiation	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	11262228.	IMP	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048545	response to steroid hormone	11262228.	IMP	Process
GO:0050767	regulation of neurogenesis	24391977.	IMP	Process
GO:0050786	RAGE receptor binding	-	ISO	Function
GO:0050829	defense response to Gram-negative bacterium	-	ISO	Process
GO:0050830	defense response to Gram-positive bacterium	-	ISO	Process
GO:0060326	cell chemotaxis	-	ISO	Process
GO:0072091	regulation of stem cell proliferation	24391977.	IMP	Process
GO:1902042	negative regulation of extrinsic apoptotic signaling pathway via death domain receptors	19139395.	IMP	Process