EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000054808 (Gene tree)
Gene ID: 60595
Gene Symbol: Actn4
Alias: -
Full Name: actinin alpha 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 69093
Position: chr7: 28893248-28962340
Accession: 1890773
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000148196	-	617	-	ENSMUSP00000122268	133 (aa)	-	D3Z761
ENSMUST00000217157	-	3530	XM_006540255	ENSMUSP00000151028	932 (aa)	XP_006540318	A0A1L1SV25
ENSMUST00000127210	-	1594	-	ENSMUSP00000115436	518 (aa)	-	E9Q2W9
ENSMUST00000216863	-	1489	-	ENSMUSP00000151188	323 (aa)	-	A0A1L1SVJ6
ENSMUST00000068045	-	3877	XM_006540254	ENSMUSP00000066068	912 (aa)	-	P57780
ENSMUST00000150493	-	726	-	-	- (aa)	-	-
ENSMUST00000129338	-	508	-	-	- (aa)	-	-
ENSMUST00000207765	-	1890	-	-	- (aa)	-	-
ENSMUST00000143584	-	750	-	-	- (aa)	-	-
ENSMUST00000144909	-	2581	-	-	- (aa)	-	-
ENSMUST00000140622	-	774	-	ENSMUSP00000123210	206 (aa)	-	D3Z0L8

Gene Model

Click here to download ENSMUSG00000054808's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04510	Focal adhesion	KEGG
mmu04520	Adherens junction	KEGG
mmu04530	Tight junction	KEGG
mmu04670	Leukocyte transendothelial migration	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu05146	Amoebiasis	KEGG
mmu05203	Viral carcinogenesis	KEGG
mmu05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000054808's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000054808	Actn4	100	100.000	ENSG00000130402	ACTN4	100	98.901	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001725	stress fiber	15841212.	IDA	Component
GO:0001725	stress fiber	23890175.	IDA	Component
GO:0001725	stress fiber	-	ISO	Component
GO:0001882	nucleoside binding	-	ISO	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003779	actin binding	-	IEA	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	12960352.16944923.18332111.22693585.23055941.23890175.25411248.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	12960352.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005911	cell-cell junction	18332111.	IDA	Component
GO:0015031	protein transport	-	IEA	Process
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0030018	Z disc	20215401.20368620.	IDA	Component
GO:0030050	vesicle transport along actin filament	-	ISO	Process
GO:0030054	cell junction	-	IEA	Component
GO:0030335	positive regulation of cell migration	-	ISO	Process
GO:0030374	nuclear receptor transcription coactivator activity	-	ISO	Function
GO:0030863	cortical cytoskeleton	12960352.	IDA	Component
GO:0031143	pseudopodium	15633123.	IDA	Component
GO:0031490	chromatin DNA binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033209	tumor necrosis factor-mediated signaling pathway	-	ISO	Process
GO:0035257	nuclear hormone receptor binding	-	ISO	Function
GO:0035357	peroxisome proliferator activated receptor signaling pathway	-	ISO	Process
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0042803	protein homodimerization activity	15841212.	TAS	Function
GO:0042974	retinoic acid receptor binding	-	ISO	Function
GO:0042981	regulation of apoptotic process	-	ISO	Process
GO:0043005	neuron projection	-	ISO	Component
GO:0044325	ion channel binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0047485	protein N-terminus binding	-	ISO	Function
GO:0048384	retinoic acid receptor signaling pathway	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0048549	positive regulation of pinocytosis	10954430.	IMP	Process
GO:0051015	actin filament binding	15465019.18332111.	IDA	Function
GO:0051015	actin filament binding	-	ISO	Function
GO:0051017	actin filament bundle assembly	15841212.	IDA	Process
GO:0051271	negative regulation of cellular component movement	12782671.	IDA	Process
GO:0051272	positive regulation of cellular component movement	15633123.	IDA	Process
GO:0051272	positive regulation of cellular component movement	16837921.	IMP	Process
GO:0051272	positive regulation of cellular component movement	-	ISO	Process
GO:0070830	bicellular tight junction assembly	18332111.	IMP	Process
GO:1900025	negative regulation of substrate adhesion-dependent cell spreading	-	ISO	Process
GO:1901224	positive regulation of NIK/NF-kappaB signaling	-	ISO	Process
GO:1902396	protein localization to bicellular tight junction	18332111.	IMP	Process
GO:1903506	regulation of nucleic acid-templated transcription	-	ISO	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component