EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMUSG00000054931 (Gene tree)
Gene ID: 544922
Gene Symbol: Zkscan4
Alias: -
Full Name: zinc finger with KRAB and SCAN domains 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 6601 bases
Position: chr13:21478907-21485507
Accession: 3649412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	1	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	2	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	3	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	4	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	5	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	6	7
ENSMUSP00000153278	zf-C2H2	PF00096.26	6.8e-41	7	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	1	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	2	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	3	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	4	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	5	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	6	7
ENSMUSP00000054604	zf-C2H2	PF00096.26	1.2e-40	7	7
ENSMUSP00000153278	zf-met	PF12874.7	1.3e-05	1	1
ENSMUSP00000054604	zf-met	PF12874.7	2.1e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000062609	-	2400	-	ENSMUSP00000054604	480 (aa)	-	Q5SZT6
ENSMUST00000225845	-	1506	-	ENSMUSP00000153278	451 (aa)	-	A0A286YD55

Gene Model

Click here to download ENSMUSG00000054931's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000054931's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000054931	Zkscan4	99	56.642	ENSMUSG00000021327	Zkscan3	97	72.531
ENSMUSG00000054931	Zkscan4	53	50.336	ENSMUSG00000059689	Zfp637	71	48.372
ENSMUSG00000054931	Zkscan4	57	45.852	ENSMUSG00000049755	Zfp672	100	41.975
ENSMUSG00000054931	Zkscan4	95	39.869	ENSMUSG00000023902	Zscan10	95	32.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000054931	Zkscan4	99	60.886	ENSCGRG00001006591	Zkscan3	97	60.886	Cricetulus_griseus_chok1gshd
ENSMUSG00000054931	Zkscan4	99	60.886	ENSCGRG00000001582	Zkscan3	97	60.886	Cricetulus_griseus_crigri
ENSMUSG00000054931	Zkscan4	99	63.060	ENSJJAG00000004576	-	97	63.060	Jaculus_jaculus
ENSMUSG00000054931	Zkscan4	99	66.048	ENSMAUG00000009785	Zkscan3	97	66.048	Mesocricetus_auratus
ENSMUSG00000054931	Zkscan4	99	65.492	ENSMOCG00000017860	Zkscan3	97	72.131	Microtus_ochrogaster
ENSMUSG00000054931	Zkscan4	100	91.535	MGP_CAROLIEiJ_G0018274	Zkscan4	100	90.945	Mus_caroli
ENSMUSG00000054931	Zkscan4	99	96.211	MGP_PahariEiJ_G0019324	Zkscan4	99	96.211	Mus_pahari
ENSMUSG00000054931	Zkscan4	100	99.375	MGP_SPRETEiJ_G0019129	Zkscan4	100	99.375	Mus_spretus
ENSMUSG00000054931	Zkscan4	99	57.404	ENSPCAG00000000195	ZKSCAN4	99	57.404	Procavia_capensis
ENSMUSG00000054931	Zkscan4	99	74.751	ENSSSCG00000001204	ZKSCAN4	100	59.669	Sus_scrofa
ENSMUSG00000054931	Zkscan4	75	65.301	ENSTTRG00000015632	-	100	65.301	Tursiops_truncatus