EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000055065 (Gene tree)
Gene ID
67040
Gene Symbol
Ddx17
Alias
2610007K22Rik|A430025E01Rik|LOC381024|p72
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 17
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
19006 bases
Position
chr15:79527736-79546741
Accession
1914290
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000155737DEADPF00270.296.3e-5011
ENSMUSP00000155365DEADPF00270.296.8e-5011
ENSMUSP00000155307DEADPF00270.292.2e-4911
ENSMUSP00000055535DEADPF00270.292.2e-4911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseRBDmap & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000229877-4726-ENSMUSP00000155307650 (aa)-Q501J6
ENSMUST00000229431-2821-ENSMUSP00000155737407 (aa)-Q501J6
ENSMUST00000054014-4732-ENSMUSP00000055535652 (aa)-Q3U741
ENSMUST00000231053-3379-ENSMUSP00000155365418 (aa)-Q3TU25
Gene Model
Click here to download ENSMUSG00000055065's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000055065's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000055065Ddx177732.381ENSMUSG00000017999Ddx275632.558
ENSMUSG00000055065Ddx177232.215ENSMUSG00000001674Ddx185233.333
ENSMUSG00000055065Ddx177431.153ENSMUSG00000029389Ddx556032.687
ENSMUSG00000055065Ddx178038.209ENSMUSG00000021758Ddx45739.163
ENSMUSG00000055065Ddx177731.329ENSMUSG00000059796Eif4a18833.151
ENSMUSG00000055065Ddx178634.366ENSMUSG00000026404Ddx597132.889
ENSMUSG00000055065Ddx179882.134ENSMUSG00000020719Ddx59383.641
ENSMUSG00000055065Ddx177238.305ENSMUSG00000030204Ddx478536.869
ENSMUSG00000055065Ddx175830.971ENSMUSG00000032097Ddx67430.894
ENSMUSG00000055065Ddx176230.843ENSMUSG00000020677Ddx526830.456
ENSMUSG00000055065Ddx178038.375ENSMUSG00000003360Ddx235139.110
ENSMUSG00000055065Ddx177232.550ENSMUSG00000032101Ddx257631.078
ENSMUSG00000055065Ddx175130.556ENSMUSG00000045538Ddx286630.556
ENSMUSG00000055065Ddx177943.658ENSMUSG00000069045Ddx3y6443.499
ENSMUSG00000055065Ddx177238.742ENSMUSG00000057788Ddx497437.903
ENSMUSG00000055065Ddx177944.248ENSMUSG00000039224D1Pas17340.467
ENSMUSG00000055065Ddx177233.562ENSMUSG00000107906Gm55808234.985
ENSMUSG00000055065Ddx177233.904ENSMUSG00000025580Eif4a38235.277
ENSMUSG00000055065Ddx177944.807ENSMUSG00000000787Ddx3x7340.194
ENSMUSG00000055065Ddx177632.154ENSMUSG00000022884Eif4a29033.832
ENSMUSG00000055065Ddx178239.535ENSMUSG00000021494Ddx416539.952
ENSMUSG00000055065Ddx177233.562ENSMUSG00000094973Gm89948234.985
ENSMUSG00000055065Ddx177733.333ENSMUSG00000020076Ddx505033.962
ENSMUSG00000055065Ddx175330.556ENSMUSG00000026806Ddx315431.579
ENSMUSG00000055065Ddx179043.501ENSMUSG00000070291Ddx436843.527
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000055065Ddx1710098.773ENSG00000100201DDX1798100.000Homo_sapiens
ENSMUSG00000055065Ddx179588.144ENSAPOG00000017303si:dkey-156n14.59374.841Acanthochromis_polyacanthus
ENSMUSG00000055065Ddx1710098.926ENSAMEG00000010601DDX178998.926Ailuropoda_melanoleuca
ENSMUSG00000055065Ddx179588.889ENSAOCG00000004874si:dkey-156n14.59374.606Amphiprion_ocellaris
ENSMUSG00000055065Ddx179588.630ENSAPEG00000018317si:dkey-156n14.59374.448Amphiprion_percula
ENSMUSG00000055065Ddx179588.114ENSATEG00000021733si:dkey-156n14.59572.881Anabas_testudineus
ENSMUSG00000055065Ddx179595.078ENSAPLG00000014334-9989.899Anas_platyrhynchos
ENSMUSG00000055065Ddx1710091.271ENSANAG00000035052DDX179596.828Aotus_nancymaae
ENSMUSG00000055065Ddx179587.855ENSACLG00000015887si:dkey-156n14.59374.092Astatotilapia_calliptera
ENSMUSG00000055065Ddx179588.601ENSACLG00000015882DDX179475.980Astatotilapia_calliptera
ENSMUSG00000055065Ddx1710099.761ENSBTAG00000009887DDX1710099.761Bos_taurus
ENSMUSG00000055065Ddx179060.109WBGene00010260ddx-177960.497Caenorhabditis_elegans
ENSMUSG00000055065Ddx179999.752ENSCJAG00000011797DDX1710098.615Callithrix_jacchus
ENSMUSG00000055065Ddx1710098.923ENSCAFG00000001395DDX1710098.923Canis_familiaris
ENSMUSG00000055065Ddx1710099.761ENSCAFG00020002867DDX1710099.761Canis_lupus_dingo
ENSMUSG00000055065Ddx1710099.761ENSCHIG00000021332DDX1710099.761Capra_hircus
ENSMUSG00000055065Ddx179999.752ENSTSYG00000001303DDX179999.751Carlito_syrichta
ENSMUSG00000055065Ddx1710099.761ENSCPOG00000011790DDX1710099.761Cavia_porcellus
ENSMUSG00000055065Ddx1710098.769ENSCCAG00000024116DDX1710098.769Cebus_capucinus
ENSMUSG00000055065Ddx1710099.761ENSCATG00000035701DDX1710099.761Cercocebus_atys
ENSMUSG00000055065Ddx1710099.761ENSCLAG00000017294DDX1710099.761Chinchilla_lanigera
ENSMUSG00000055065Ddx1710098.769ENSCSAG00000006649DDX1710098.769Chlorocebus_sabaeus
ENSMUSG00000055065Ddx179999.007ENSCHOG00000001931DDX178997.846Choloepus_hoffmanni
ENSMUSG00000055065Ddx178948.919ENSCING00000008750-8245.781Ciona_intestinalis
ENSMUSG00000055065Ddx179171.545ENSCING00000004147-7770.387Ciona_intestinalis
ENSMUSG00000055065Ddx1710099.761ENSCANG00000002348DDX1710099.761Colobus_angolensis_palliatus
ENSMUSG00000055065Ddx1710099.693ENSCGRG00001023050Ddx1710099.693Cricetulus_griseus_chok1gshd
ENSMUSG00000055065Ddx1710099.693ENSCGRG00000007756Ddx1710099.693Cricetulus_griseus_crigri
ENSMUSG00000055065Ddx179687.661ENSCSEG00000011351si:dkey-156n14.59189.153Cynoglossus_semilaevis
ENSMUSG00000055065Ddx179288.830ENSCVAG00000010921si:dkey-156n14.59274.322Cyprinodon_variegatus
ENSMUSG00000055065Ddx179587.565ENSDARG00000010873DDX179289.153Danio_rerio
ENSMUSG00000055065Ddx179999.752ENSDNOG00000006499DDX178898.450Dasypus_novemcinctus
ENSMUSG00000055065Ddx1710099.080ENSDORG00000003358Ddx1710099.080Dipodomys_ordii
ENSMUSG00000055065Ddx179763.706FBgn0035720CG100777965.860Drosophila_melanogaster
ENSMUSG00000055065Ddx176294.667ENSETEG00000009484-6495.070Echinops_telfairi
ENSMUSG00000055065Ddx1710098.923ENSEASG00005018767DDX1710098.923Equus_asinus_asinus
ENSMUSG00000055065Ddx1710099.761ENSECAG00000025110DDX1710099.761Equus_caballus
ENSMUSG00000055065Ddx1710099.761ENSFCAG00000031570DDX1710099.761Felis_catus
ENSMUSG00000055065Ddx179595.325ENSFALG00000012560DDX178489.263Ficedula_albicollis
ENSMUSG00000055065Ddx179799.055ENSFDAG00000009967DDX1710099.055Fukomys_damarensis
ENSMUSG00000055065Ddx179595.325ENSGALG00000037360DDX179589.744Gallus_gallus
ENSMUSG00000055065Ddx179972.840ENSGACG00000019151si:dkey-156n14.59363.328Gasterosteus_aculeatus
ENSMUSG00000055065Ddx1710099.761ENSGGOG00000008309DDX1710099.761Gorilla_gorilla
ENSMUSG00000055065Ddx179587.597ENSHBUG00000021303si:dkey-156n14.59374.173Haplochromis_burtoni
ENSMUSG00000055065Ddx179588.601ENSHBUG00000022268DDX179475.530Haplochromis_burtoni
ENSMUSG00000055065Ddx1710098.769ENSHGLG00000012568DDX178998.769Heterocephalus_glaber_female
ENSMUSG00000055065Ddx1710099.522ENSHGLG00100011291DDX1710099.522Heterocephalus_glaber_male
ENSMUSG00000055065Ddx179588.860ENSIPUG00000015768si:dkey-156n14.59489.947Ictalurus_punctatus
ENSMUSG00000055065Ddx1710098.615ENSSTOG00000013699DDX178998.615Ictidomys_tridecemlineatus
ENSMUSG00000055065Ddx1710098.923ENSJJAG00000011350Ddx179098.923Jaculus_jaculus
ENSMUSG00000055065Ddx1710099.761ENSMFAG00000046051DDX1710099.761Macaca_fascicularis
ENSMUSG00000055065Ddx1710099.761ENSMMUG00000004304DDX1710099.761Macaca_mulatta
ENSMUSG00000055065Ddx1710099.761ENSMNEG00000022218DDX1710099.761Macaca_nemestrina
ENSMUSG00000055065Ddx179996.918ENSMLEG00000029141DDX179998.574Mandrillus_leucophaeus
ENSMUSG00000055065Ddx179588.630ENSMAMG00000008427si:dkey-156n14.59373.387Mastacembelus_armatus
ENSMUSG00000055065Ddx179587.855ENSMZEG00005009937si:dkey-156n14.59374.331Maylandia_zebra
ENSMUSG00000055065Ddx179595.337ENSMGAG00000012423DDX178698.876Meleagris_gallopavo
ENSMUSG00000055065Ddx179485.496ENSMAUG00000020476Ddx179485.242Mesocricetus_auratus
ENSMUSG00000055065Ddx1710099.761ENSMICG00000011601DDX1710099.761Microcebus_murinus
ENSMUSG00000055065Ddx179695.360ENSMOCG00000010769Ddx178795.360Microtus_ochrogaster
ENSMUSG00000055065Ddx179985.539ENSMMOG00000007416si:dkey-156n14.58987.664Mola_mola
ENSMUSG00000055065Ddx179587.113ENSMMOG00000002806-9387.958Mola_mola
ENSMUSG00000055065Ddx179999.504ENSMODG00000009681DDX179797.355Monodelphis_domestica
ENSMUSG00000055065Ddx179587.080ENSMALG00000002485si:dkey-156n14.59572.671Monopterus_albus
ENSMUSG00000055065Ddx17100100.000MGP_CAROLIEiJ_G0020017Ddx17100100.000Mus_caroli
ENSMUSG00000055065Ddx1710099.693MGP_PahariEiJ_G0020019Ddx1710099.693Mus_pahari
ENSMUSG00000055065Ddx17100100.000MGP_SPRETEiJ_G0020915Ddx17100100.000Mus_spretus
ENSMUSG00000055065Ddx1710098.923ENSMPUG00000013125DDX1710098.923Mustela_putorius_furo
ENSMUSG00000055065Ddx179997.330ENSMLUG00000013151DDX179195.294Myotis_lucifugus
ENSMUSG00000055065Ddx1710099.080ENSNGAG00000004001Ddx1710099.080Nannospalax_galili
ENSMUSG00000055065Ddx179588.402ENSNBRG00000002592DDX178789.710Neolamprologus_brichardi
ENSMUSG00000055065Ddx179687.692ENSNBRG00000020059-8989.418Neolamprologus_brichardi
ENSMUSG00000055065Ddx179997.602ENSNLEG00000015117DDX179998.574Nomascus_leucogenys
ENSMUSG00000055065Ddx179599.482ENSMEUG00000009627DDX1710088.942Notamacropus_eugenii
ENSMUSG00000055065Ddx179999.504ENSOPRG00000014734DDX178998.308Ochotona_princeps
ENSMUSG00000055065Ddx179494.976ENSODEG00000013118DDX178695.072Octodon_degus
ENSMUSG00000055065Ddx179588.372ENSONIG00000018880si:dkey-156n14.59189.418Oreochromis_niloticus
ENSMUSG00000055065Ddx179999.504ENSOCUG00000004982DDX1710098.462Oryctolagus_cuniculus
ENSMUSG00000055065Ddx179587.629ENSORLG00000013685si:dkey-156n14.59373.450Oryzias_latipes
ENSMUSG00000055065Ddx179587.887ENSORLG00020021743si:dkey-156n14.59373.291Oryzias_latipes_hni
ENSMUSG00000055065Ddx179587.887ENSORLG00015022548si:dkey-156n14.59373.609Oryzias_latipes_hsok
ENSMUSG00000055065Ddx179587.371ENSOMEG00000009515si:dkey-156n14.59674.404Oryzias_melastigma
ENSMUSG00000055065Ddx1710098.773ENSOGAG00000001539DDX1710098.773Otolemur_garnettii
ENSMUSG00000055065Ddx179798.736ENSOARG00000015489DDX1710098.736Ovis_aries
ENSMUSG00000055065Ddx1710099.761ENSPPAG00000042301DDX1710099.761Pan_paniscus
ENSMUSG00000055065Ddx1710098.773ENSPPRG00000008444DDX178798.773Panthera_pardus
ENSMUSG00000055065Ddx179997.122ENSPTIG00000008733DDX179997.122Panthera_tigris_altaica
ENSMUSG00000055065Ddx1710099.761ENSPTRG00000014369DDX1710099.761Pan_troglodytes
ENSMUSG00000055065Ddx1710099.761ENSPANG00000015143DDX1710099.761Papio_anubis
ENSMUSG00000055065Ddx179589.378ENSPKIG00000002575si:dkey-156n14.59475.739Paramormyrops_kingsleyae
ENSMUSG00000055065Ddx179984.615ENSPKIG00000007831DDX179473.758Paramormyrops_kingsleyae
ENSMUSG00000055065Ddx176085.366ENSPMGG00000007437si:dkey-156n14.58085.950Periophthalmus_magnuspinnatus
ENSMUSG00000055065Ddx1710099.233ENSPEMG00000021115Ddx1710099.233Peromyscus_maniculatus_bairdii
ENSMUSG00000055065Ddx179999.504ENSPCIG00000001652DDX1710097.846Phascolarctos_cinereus
ENSMUSG00000055065Ddx179288.830ENSPREG00000000506si:dkey-156n14.59274.204Poecilia_reticulata
ENSMUSG00000055065Ddx1710098.769ENSPPYG00000011821DDX1710098.769Pongo_abelii
ENSMUSG00000055065Ddx179999.504ENSPCAG00000011672DDX178998.292Procavia_capensis
ENSMUSG00000055065Ddx1710098.773ENSPCOG00000014360DDX179998.736Propithecus_coquereli
ENSMUSG00000055065Ddx1710098.923ENSPVAG00000010133DDX178998.923Pteropus_vampyrus
ENSMUSG00000055065Ddx179588.342ENSPNYG00000019669-9475.654Pundamilia_nyererei
ENSMUSG00000055065Ddx179587.597ENSPNYG00000005694si:dkey-156n14.59374.408Pundamilia_nyererei
ENSMUSG00000055065Ddx179688.689ENSPNAG00000029948si:dkey-156n14.59290.476Pygocentrus_nattereri
ENSMUSG00000055065Ddx1710099.693ENSRNOG00000051170Ddx1710099.693Rattus_norvegicus
ENSMUSG00000055065Ddx1710098.773ENSRBIG00000031437DDX179998.574Rhinopithecus_bieti
ENSMUSG00000055065Ddx1710099.761ENSRROG00000045378DDX1710099.761Rhinopithecus_roxellana
ENSMUSG00000055065Ddx179960.741YNL112W-8161.451Saccharomyces_cerevisiae
ENSMUSG00000055065Ddx1710090.031ENSSBOG00000024547DDX178990.031Saimiri_boliviensis_boliviensis
ENSMUSG00000055065Ddx179797.476ENSSHAG00000004578DDX1710097.476Sarcophilus_harrisii
ENSMUSG00000055065Ddx179985.112ENSSFOG00015012308ddx179574.923Scleropages_formosus
ENSMUSG00000055065Ddx179588.083ENSSMAG00000005509DDX179474.724Scophthalmus_maximus
ENSMUSG00000055065Ddx179586.822ENSSMAG00000007794si:dkey-156n14.59371.429Scophthalmus_maximus
ENSMUSG00000055065Ddx179588.114ENSSPAG00000019808-9389.418Stegastes_partitus
ENSMUSG00000055065Ddx179588.114ENSSPAG00000017130si:dkey-156n14.59374.762Stegastes_partitus
ENSMUSG00000055065Ddx1710099.761ENSSSCG00000000104DDX1710099.761Sus_scrofa
ENSMUSG00000055065Ddx179595.325ENSTGUG00000010391DDX179589.567Taeniopygia_guttata
ENSMUSG00000055065Ddx179586.047ENSTRUG00000021931si:dkey-156n14.59374.240Takifugu_rubripes
ENSMUSG00000055065Ddx176284.064ENSTNIG00000002291-8886.667Tetraodon_nigroviridis
ENSMUSG00000055065Ddx179797.472ENSTTRG00000005623DDX1710097.472Tursiops_truncatus
ENSMUSG00000055065Ddx179897.969ENSUAMG00000007290DDX179897.969Ursus_americanus
ENSMUSG00000055065Ddx1710091.385ENSVPAG00000001476DDX178991.385Vicugna_pacos
ENSMUSG00000055065Ddx1710099.761ENSVVUG00000022762DDX1710099.761Vulpes_vulpes
ENSMUSG00000055065Ddx179690.331ENSXETG00000006900ddx179679.006Xenopus_tropicalis
ENSMUSG00000055065Ddx179289.037ENSXMAG00000005078si:dkey-156n14.59274.522Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0000380alternative mRNA splicing, via spliceosome24910439.IMPProcess
GO:0000380alternative mRNA splicing, via spliceosome-ISOProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome23022728.IDAProcess
GO:0000381regulation of alternative mRNA splicing, via spliceosome-ISOProcess
GO:0001837epithelial to mesenchymal transition-ISOProcess
GO:0002376immune system process-IEAProcess
GO:0003676nucleic acid binding-IEAFunction
GO:0003713transcription coactivator activity-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding24581491.24910439.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0006357regulation of transcription by RNA polymerase II-ISOProcess
GO:0006364rRNA processing-IEAProcess
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0010586miRNA metabolic process-ISOProcess
GO:0016607nuclear speck-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0030520intracellular estrogen receptor signaling pathway-ISOProcess
GO:0030521androgen receptor signaling pathway-ISOProcess
GO:0031047gene silencing by RNA-IEAProcess
GO:0045445myoblast differentiation24910439.IMPProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0051607defense response to virus-IEAProcess
GO:0061614pri-miRNA transcription by RNA polymerase II24910439.IMPProcess
GO:2001014regulation of skeletal muscle cell differentiation-ISOProcess

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