EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000056209 (Gene tree)
Gene ID: 18150
Gene Symbol: Npm3
Alias: Nub1
Full Name: nucleoplasmin 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 1858 bases
Position: chr19:45747734-45749591
Accession: 894653
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000069578	Nucleoplasmin	PF03066.15	1.3e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000070215	-	888	-	ENSMUSP00000069578	175 (aa)	-	Q9CPP0
ENSMUST00000144165	-	710	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000056209's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000056209's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000056209	Npm3	70	33.871	ENSMUSG00000047911	Npm2	73	33.065

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000056209	Npm3	100	82.584	ENSG00000107833	NPM3	94	85.119	Homo_sapiens
ENSMUSG00000056209	Npm3	65	50.000	ENSAPOG00000013083	npm3	70	49.565	Acanthochromis_polyacanthus
ENSMUSG00000056209	Npm3	100	84.181	ENSAMEG00000017639	-	100	85.876	Ailuropoda_melanoleuca
ENSMUSG00000056209	Npm3	85	62.500	ENSAMEG00000019414	-	90	64.474	Ailuropoda_melanoleuca
ENSMUSG00000056209	Npm3	79	46.809	ENSACIG00000022586	npm3	85	48.252	Amphilophus_citrinellus
ENSMUSG00000056209	Npm3	61	50.943	ENSAOCG00000009376	npm3	69	49.107	Amphiprion_ocellaris
ENSMUSG00000056209	Npm3	61	50.943	ENSAPEG00000015863	npm3	69	49.107	Amphiprion_percula
ENSMUSG00000056209	Npm3	61	50.943	ENSATEG00000022752	npm3	66	50.467	Anabas_testudineus
ENSMUSG00000056209	Npm3	57	73.000	ENSAPLG00000010935	NPM3	87	62.687	Anas_platyrhynchos
ENSMUSG00000056209	Npm3	74	56.154	ENSACAG00000011936	NPM3	74	56.589	Anolis_carolinensis
ENSMUSG00000056209	Npm3	94	69.643	ENSANAG00000023070	-	96	69.643	Aotus_nancymaae
ENSMUSG00000056209	Npm3	100	70.621	ENSANAG00000033290	-	94	70.659	Aotus_nancymaae
ENSMUSG00000056209	Npm3	84	82.993	ENSANAG00000023832	-	64	83.088	Aotus_nancymaae
ENSMUSG00000056209	Npm3	100	84.270	ENSANAG00000027082	-	94	84.524	Aotus_nancymaae
ENSMUSG00000056209	Npm3	61	50.943	ENSACLG00000007854	npm3	89	47.917	Astatotilapia_calliptera
ENSMUSG00000056209	Npm3	61	52.830	ENSAMXG00000039828	npm3	54	53.846	Astyanax_mexicanus
ENSMUSG00000056209	Npm3	97	85.380	ENSBTAG00000016335	NPM3	97	86.550	Bos_taurus
ENSMUSG00000056209	Npm3	100	82.584	ENSCJAG00000017650	NPM3	94	83.333	Callithrix_jacchus
ENSMUSG00000056209	Npm3	94	85.455	ENSCAFG00000009919	NPM3	87	86.286	Canis_familiaris
ENSMUSG00000056209	Npm3	99	86.286	ENSCAFG00020009185	NPM3	99	86.286	Canis_lupus_dingo
ENSMUSG00000056209	Npm3	99	57.803	ENSCHIG00000016052	-	92	57.669	Capra_hircus
ENSMUSG00000056209	Npm3	97	85.380	ENSCHIG00000024055	-	91	86.335	Capra_hircus
ENSMUSG00000056209	Npm3	94	45.732	ENSCAPG00000016606	NPM3	94	46.061	Cavia_aperea
ENSMUSG00000056209	Npm3	94	81.818	ENSCPOG00000006301	NPM3	95	81.818	Cavia_porcellus
ENSMUSG00000056209	Npm3	94	82.738	ENSCCAG00000031043	-	100	83.708	Cebus_capucinus
ENSMUSG00000056209	Npm3	100	68.539	ENSCCAG00000029457	-	94	69.643	Cebus_capucinus
ENSMUSG00000056209	Npm3	94	83.929	ENSCATG00000013755	NPM3	94	85.119	Cercocebus_atys
ENSMUSG00000056209	Npm3	94	83.929	ENSCSAG00000005509	NPM3	94	85.119	Chlorocebus_sabaeus
ENSMUSG00000056209	Npm3	94	61.212	ENSCPBG00000003817	NPM3	97	60.976	Chrysemys_picta_bellii
ENSMUSG00000056209	Npm3	100	82.486	ENSCANG00000020300	NPM3	100	84.746	Colobus_angolensis_palliatus
ENSMUSG00000056209	Npm3	100	93.143	ENSCGRG00001013345	Npm3	100	93.143	Cricetulus_griseus_chok1gshd
ENSMUSG00000056209	Npm3	78	91.176	ENSCGRG00000015351	Npm3	85	89.855	Cricetulus_griseus_crigri
ENSMUSG00000056209	Npm3	79	43.919	ENSCSEG00000007944	npm3	94	43.671	Cynoglossus_semilaevis
ENSMUSG00000056209	Npm3	61	49.541	ENSCVAG00000003305	npm3	89	44.898	Cyprinodon_variegatus
ENSMUSG00000056209	Npm3	63	50.000	ENSDARG00000103594	npm3	69	49.107	Danio_rerio
ENSMUSG00000056209	Npm3	100	80.682	ENSDORG00000003491	Npm3	94	81.928	Dipodomys_ordii
ENSMUSG00000056209	Npm3	99	76.836	ENSETEG00000006307	NPM3	99	78.531	Echinops_telfairi
ENSMUSG00000056209	Npm3	94	82.036	ENSEASG00005008834	NPM3	100	84.746	Equus_asinus_asinus
ENSMUSG00000056209	Npm3	94	82.036	ENSECAG00000007524	NPM3	100	84.746	Equus_caballus
ENSMUSG00000056209	Npm3	64	50.893	ENSELUG00000021730	npm3	85	46.099	Esox_lucius
ENSMUSG00000056209	Npm3	100	86.932	ENSFCAG00000007178	NPM3	100	87.500	Felis_catus
ENSMUSG00000056209	Npm3	66	63.478	ENSFALG00000008586	NPM3	91	61.379	Ficedula_albicollis
ENSMUSG00000056209	Npm3	62	80.556	ENSFDAG00000016537	NPM3	100	80.556	Fukomys_damarensis
ENSMUSG00000056209	Npm3	70	47.541	ENSFHEG00000003983	npm3	68	49.533	Fundulus_heteroclitus
ENSMUSG00000056209	Npm3	61	48.113	ENSGMOG00000004317	npm3	74	46.957	Gadus_morhua
ENSMUSG00000056209	Npm3	60	67.619	ENSGALG00000032329	NPM3	95	59.286	Gallus_gallus
ENSMUSG00000056209	Npm3	61	50.467	ENSGAFG00000009135	npm3	94	43.421	Gambusia_affinis
ENSMUSG00000056209	Npm3	61	51.887	ENSGACG00000007294	npm3	62	51.887	Gasterosteus_aculeatus
ENSMUSG00000056209	Npm3	95	55.814	ENSGAGG00000004081	NPM3	88	59.873	Gopherus_agassizii
ENSMUSG00000056209	Npm3	100	82.022	ENSGGOG00000027500	NPM3	100	84.831	Gorilla_gorilla
ENSMUSG00000056209	Npm3	61	50.000	ENSHBUG00000023704	npm3	89	48.252	Haplochromis_burtoni
ENSMUSG00000056209	Npm3	100	78.286	ENSHGLG00000019118	NPM3	100	77.714	Heterocephalus_glaber_female
ENSMUSG00000056209	Npm3	77	77.778	ENSHGLG00100010926	NPM3	100	77.037	Heterocephalus_glaber_male
ENSMUSG00000056209	Npm3	75	42.424	ENSHCOG00000019322	npm3	73	42.748	Hippocampus_comes
ENSMUSG00000056209	Npm3	63	51.818	ENSIPUG00000008204	npm3	72	50.893	Ictalurus_punctatus
ENSMUSG00000056209	Npm3	99	82.955	ENSSTOG00000022621	NPM3	94	83.735	Ictidomys_tridecemlineatus
ENSMUSG00000056209	Npm3	100	83.051	ENSJJAG00000018907	Npm3	94	82.635	Jaculus_jaculus
ENSMUSG00000056209	Npm3	61	52.830	ENSKMAG00000020800	npm3	66	50.893	Kryptolebias_marmoratus
ENSMUSG00000056209	Npm3	61	51.887	ENSLBEG00000015651	npm3	86	48.921	Labrus_bergylta
ENSMUSG00000056209	Npm3	95	44.578	ENSLOCG00000000705	-	98	46.341	Lepisosteus_oculatus
ENSMUSG00000056209	Npm3	98	79.070	ENSLAFG00000023022	NPM3	95	84.431	Loxodonta_africana
ENSMUSG00000056209	Npm3	94	83.929	ENSMFAG00000041878	NPM3	94	85.119	Macaca_fascicularis
ENSMUSG00000056209	Npm3	94	83.333	ENSMMUG00000015774	NPM3	100	84.831	Macaca_mulatta
ENSMUSG00000056209	Npm3	94	83.929	ENSMNEG00000039999	NPM3	94	85.119	Macaca_nemestrina
ENSMUSG00000056209	Npm3	94	83.929	ENSMLEG00000038129	NPM3	94	85.119	Mandrillus_leucophaeus
ENSMUSG00000056209	Npm3	82	43.919	ENSMAMG00000002698	npm3	69	50.000	Mastacembelus_armatus
ENSMUSG00000056209	Npm3	81	48.252	ENSMZEG00005003091	npm3	89	48.252	Maylandia_zebra
ENSMUSG00000056209	Npm3	94	93.939	ENSMAUG00000015218	Npm3	94	93.939	Mesocricetus_auratus
ENSMUSG00000056209	Npm3	100	84.746	ENSMICG00000044119	NPM3	94	85.030	Microcebus_murinus
ENSMUSG00000056209	Npm3	99	91.379	ENSMOCG00000013601	Npm3	99	89.080	Microtus_ochrogaster
ENSMUSG00000056209	Npm3	61	50.943	ENSMMOG00000010681	npm3	67	50.000	Mola_mola
ENSMUSG00000056209	Npm3	98	68.000	ENSMODG00000011689	NPM3	94	69.461	Monodelphis_domestica
ENSMUSG00000056209	Npm3	67	45.378	ENSMALG00000016787	npm3	70	45.378	Monopterus_albus
ENSMUSG00000056209	Npm3	100	98.286	MGP_CAROLIEiJ_G0023020	Npm3	100	98.286	Mus_caroli
ENSMUSG00000056209	Npm3	100	97.714	MGP_PahariEiJ_G0014510	Npm3	100	97.714	Mus_pahari
ENSMUSG00000056209	Npm3	100	98.857	MGP_SPRETEiJ_G0023941	Npm3	100	98.857	Mus_spretus
ENSMUSG00000056209	Npm3	100	83.616	ENSMPUG00000016894	NPM3	100	85.311	Mustela_putorius_furo
ENSMUSG00000056209	Npm3	97	80.814	ENSMLUG00000004961	NPM3	92	82.209	Myotis_lucifugus
ENSMUSG00000056209	Npm3	99	79.885	ENSNGAG00000000155	-	99	78.161	Nannospalax_galili
ENSMUSG00000056209	Npm3	99	85.714	ENSNGAG00000022833	-	99	86.286	Nannospalax_galili
ENSMUSG00000056209	Npm3	94	81.548	ENSNLEG00000018637	-	100	83.146	Nomascus_leucogenys
ENSMUSG00000056209	Npm3	94	83.929	ENSNLEG00000029281	-	94	85.119	Nomascus_leucogenys
ENSMUSG00000056209	Npm3	57	66.667	ENSMEUG00000004931	-	100	66.667	Notamacropus_eugenii
ENSMUSG00000056209	Npm3	78	75.912	ENSMEUG00000003465	-	93	77.519	Notamacropus_eugenii
ENSMUSG00000056209	Npm3	57	69.697	ENSMEUG00000002619	-	100	69.697	Notamacropus_eugenii
ENSMUSG00000056209	Npm3	93	80.606	ENSOPRG00000009229	NPM3	93	80.000	Ochotona_princeps
ENSMUSG00000056209	Npm3	97	78.235	ENSODEG00000006704	NPM3	96	78.182	Octodon_degus
ENSMUSG00000056209	Npm3	79	48.951	ENSONIG00000009513	npm3	88	46.853	Oreochromis_niloticus
ENSMUSG00000056209	Npm3	94	85.542	ENSOCUG00000016819	NPM3	94	86.747	Oryctolagus_cuniculus
ENSMUSG00000056209	Npm3	61	50.943	ENSORLG00000008492	npm3	89	48.936	Oryzias_latipes
ENSMUSG00000056209	Npm3	61	50.943	ENSORLG00020002450	npm3	89	48.936	Oryzias_latipes_hni
ENSMUSG00000056209	Npm3	79	48.936	ENSORLG00015006856	npm3	89	48.936	Oryzias_latipes_hsok
ENSMUSG00000056209	Npm3	65	47.368	ENSOMEG00000002666	npm3	74	45.833	Oryzias_melastigma
ENSMUSG00000056209	Npm3	100	84.181	ENSOGAG00000010001	NPM3	94	84.431	Otolemur_garnettii
ENSMUSG00000056209	Npm3	97	84.795	ENSOARG00000016916	NPM3	91	86.335	Ovis_aries
ENSMUSG00000056209	Npm3	100	82.584	ENSPPAG00000040517	NPM3	94	85.119	Pan_paniscus
ENSMUSG00000056209	Npm3	100	86.932	ENSPPRG00000012611	-	100	87.500	Panthera_pardus
ENSMUSG00000056209	Npm3	100	87.500	ENSPTIG00000005390	NPM3	100	88.068	Panthera_tigris_altaica
ENSMUSG00000056209	Npm3	100	82.584	ENSPTRG00000002875	NPM3	94	85.119	Pan_troglodytes
ENSMUSG00000056209	Npm3	94	83.929	ENSPANG00000021046	NPM3	94	85.119	Papio_anubis
ENSMUSG00000056209	Npm3	61	41.509	ENSPKIG00000007609	npm3	57	41.509	Paramormyrops_kingsleyae
ENSMUSG00000056209	Npm3	61	54.206	ENSPMGG00000020204	npm3	70	51.754	Periophthalmus_magnuspinnatus
ENSMUSG00000056209	Npm3	94	90.361	ENSPEMG00000007731	Npm3	100	91.477	Peromyscus_maniculatus_bairdii
ENSMUSG00000056209	Npm3	61	51.402	ENSPFOG00000014692	npm3	69	50.893	Poecilia_formosa
ENSMUSG00000056209	Npm3	61	51.402	ENSPLAG00000009956	npm3	69	50.893	Poecilia_latipinna
ENSMUSG00000056209	Npm3	58	51.485	ENSPMEG00000011795	npm3	71	50.943	Poecilia_mexicana
ENSMUSG00000056209	Npm3	61	51.402	ENSPREG00000020765	npm3	89	45.517	Poecilia_reticulata
ENSMUSG00000056209	Npm3	94	83.529	ENSPPYG00000002589	NPM3	87	84.444	Pongo_abelii
ENSMUSG00000056209	Npm3	100	83.616	ENSPCOG00000014704	NPM3	94	84.431	Propithecus_coquereli
ENSMUSG00000056209	Npm3	94	81.437	ENSPVAG00000004038	NPM3	100	83.616	Pteropus_vampyrus
ENSMUSG00000056209	Npm3	81	48.252	ENSPNYG00000009300	npm3	89	48.252	Pundamilia_nyererei
ENSMUSG00000056209	Npm3	63	53.153	ENSPNAG00000014779	npm3	87	50.360	Pygocentrus_nattereri
ENSMUSG00000056209	Npm3	100	93.714	ENSRNOG00000017622	Npm3	100	92.571	Rattus_norvegicus
ENSMUSG00000056209	Npm3	91	71.605	ENSRBIG00000042048	-	90	79.720	Rhinopithecus_bieti
ENSMUSG00000056209	Npm3	100	82.486	ENSRBIG00000039086	-	94	85.030	Rhinopithecus_bieti
ENSMUSG00000056209	Npm3	100	82.486	ENSRROG00000029912	NPM3	94	85.030	Rhinopithecus_roxellana
ENSMUSG00000056209	Npm3	95	83.529	ENSSBOG00000027661	NPM3	100	84.706	Saimiri_boliviensis_boliviensis
ENSMUSG00000056209	Npm3	92	66.061	ENSSHAG00000008567	NPM3	94	65.476	Sarcophilus_harrisii
ENSMUSG00000056209	Npm3	61	49.057	ENSSFOG00015013651	npm3	87	42.446	Scleropages_formosus
ENSMUSG00000056209	Npm3	61	50.000	ENSSMAG00000003907	npm3	86	46.715	Scophthalmus_maximus
ENSMUSG00000056209	Npm3	61	53.774	ENSSDUG00000022843	npm3	67	52.778	Seriola_dumerili
ENSMUSG00000056209	Npm3	61	53.774	ENSSLDG00000002811	npm3	67	52.778	Seriola_lalandi_dorsalis
ENSMUSG00000056209	Npm3	68	68.033	ENSSPUG00000011875	NPM3	76	68.033	Sphenodon_punctatus
ENSMUSG00000056209	Npm3	64	49.107	ENSSPAG00000002553	npm3	73	47.458	Stegastes_partitus
ENSMUSG00000056209	Npm3	99	80.571	ENSSSCG00000010568	NPM3	94	83.030	Sus_scrofa
ENSMUSG00000056209	Npm3	63	65.766	ENSTGUG00000009948	NPM3	84	65.766	Taeniopygia_guttata
ENSMUSG00000056209	Npm3	83	45.890	ENSTRUG00000011661	npm3	74	49.573	Takifugu_rubripes
ENSMUSG00000056209	Npm3	67	48.718	ENSTNIG00000016518	npm3	67	48.718	Tetraodon_nigroviridis
ENSMUSG00000056209	Npm3	94	84.431	ENSUAMG00000024072	NPM3	73	86.441	Ursus_americanus
ENSMUSG00000056209	Npm3	94	84.431	ENSUMAG00000023016	NPM3	73	86.441	Ursus_maritimus
ENSMUSG00000056209	Npm3	100	85.795	ENSVPAG00000003120	NPM3	100	88.068	Vicugna_pacos
ENSMUSG00000056209	Npm3	94	85.455	ENSVVUG00000000945	NPM3	87	86.286	Vulpes_vulpes
ENSMUSG00000056209	Npm3	81	44.706	ENSXETG00000014472	npm3	68	55.932	Xenopus_tropicalis
ENSMUSG00000056209	Npm3	64	50.893	ENSXCOG00000012121	npm3	67	50.893	Xiphophorus_couchianus
ENSMUSG00000056209	Npm3	64	50.893	ENSXMAG00000013473	npm3	67	50.893	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003682	chromatin binding	21873635.	IBA	Function
GO:0005515	protein binding	15596447.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	15596447.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006338	chromatin remodeling	21873635.	IBA	Process
GO:0006364	rRNA processing	15596447.	IDA	Process
GO:0009303	rRNA transcription	15596447.	IDA	Process
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0042393	histone binding	21873635.	IBA	Function