EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000056211 (Gene tree)
Gene ID
226412
Gene Symbol
R3hdm1
Alias
-
Full Name
R3H domain containing 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
134436 bases
Position
chr1:128103301-128237736
Accession
2448514
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000140538R3HPF01424.225.4e-1211
ENSMUSP00000140175R3HPF01424.226.8e-1211
ENSMUSP00000139749R3HPF01424.221.6e-1111
ENSMUSP00000141142R3HPF01424.221.9e-1111
ENSMUSP00000043103R3HPF01424.224.6e-1111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
25993413Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle ProgressionIC & MEF2015Boucas JDOI: 10.1371/journal.pone.0125745
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000190056-1155-ENSMUSP00000140209385 (aa)-A0A087WQI5
ENSMUST00000188381-1130-ENSMUSP00000140538239 (aa)-Q3URW7
ENSMUST00000185471-4982--- (aa)--
ENSMUST00000189317-1040-ENSMUSP00000140175287 (aa)-A0A087WQF6
ENSMUST00000191274-597--- (aa)--
ENSMUST00000187900-3982-ENSMUSP00000141142549 (aa)-Q80ZH9
ENSMUST00000185853-549-ENSMUSP00000139647183 (aa)-A0A087WP65
ENSMUST00000189982-3709--- (aa)--
ENSMUST00000191016-2438--- (aa)--
ENSMUST00000187023-1661-ENSMUSP00000139749486 (aa)-A0A087WPF0
ENSMUST00000188570-1588--- (aa)--
ENSMUST00000036288-4795XM_006529417ENSMUSP000000431031135 (aa)XP_006529480E9Q9Q2
ENSMUST00000190288-6449--- (aa)--
ENSMUST00000187557-453-ENSMUSP0000014058332 (aa)-A0A087WRE1
ENSMUST00000185389-8458--- (aa)--
ENSMUST00000187605-6513--- (aa)--
Gene Model
Click here to download ENSMUSG00000056211's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000056211's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000056211R3hdm19759.149ENSMUSG00000025404R3hdm29657.457
ENSMUSG00000056211R3hdm18658.219ENSMUSG00000032503Arpp217960.360
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000056211R3hdm110094.561ENSG00000048991R3HDM19994.700Homo_sapiens
ENSMUSG00000056211R3hdm110064.898ENSAPOG00000020850r3hdm19747.822Acanthochromis_polyacanthus
ENSMUSG00000056211R3hdm19993.727ENSAMEG00000014886R3HDM110088.732Ailuropoda_melanoleuca
ENSMUSG00000056211R3hdm19055.357ENSACIG00000018791-8157.178Amphilophus_citrinellus
ENSMUSG00000056211R3hdm110064.883ENSAOCG00000005192r3hdm19947.364Amphiprion_ocellaris
ENSMUSG00000056211R3hdm110064.490ENSAPEG00000016108r3hdm19945.471Amphiprion_percula
ENSMUSG00000056211R3hdm110064.344ENSATEG00000000232r3hdm19944.659Anabas_testudineus
ENSMUSG00000056211R3hdm110079.070ENSAPLG00000015231R3HDM110074.472Anas_platyrhynchos
ENSMUSG00000056211R3hdm110076.970ENSACAG00000001676R3HDM110077.320Anolis_carolinensis
ENSMUSG00000056211R3hdm110093.724ENSANAG00000035334R3HDM110087.863Aotus_nancymaae
ENSMUSG00000056211R3hdm110062.857ENSACLG00000027282r3hdm19446.949Astatotilapia_calliptera
ENSMUSG00000056211R3hdm110061.935ENSAMXG00000003536r3hdm110062.704Astyanax_mexicanus
ENSMUSG00000056211R3hdm110070.850ENSAMXG00000012861R3HDM110071.154Astyanax_mexicanus
ENSMUSG00000056211R3hdm17957.328ENSAMXG00000020587arpp218837.716Astyanax_mexicanus
ENSMUSG00000056211R3hdm110092.887ENSBTAG00000013302R3HDM110089.965Bos_taurus
ENSMUSG00000056211R3hdm110093.305ENSCJAG00000011718R3HDM110087.841Callithrix_jacchus
ENSMUSG00000056211R3hdm19993.542ENSCAFG00000005075R3HDM110088.820Canis_familiaris
ENSMUSG00000056211R3hdm19993.542ENSCAFG00020016119R3HDM110091.549Canis_lupus_dingo
ENSMUSG00000056211R3hdm19993.173ENSCHIG00000020851R3HDM110089.965Capra_hircus
ENSMUSG00000056211R3hdm110081.185ENSCAPG00000013043-10081.185Cavia_aperea
ENSMUSG00000056211R3hdm110091.289ENSCPOG00000012784R3HDM110091.561Cavia_porcellus
ENSMUSG00000056211R3hdm110092.798ENSCCAG00000027199R3HDM110087.764Cebus_capucinus
ENSMUSG00000056211R3hdm110093.724ENSCATG00000023642R3HDM110089.798Cercocebus_atys
ENSMUSG00000056211R3hdm110093.728ENSCLAG00000007962R3HDM110093.728Chinchilla_lanigera
ENSMUSG00000056211R3hdm110090.033ENSCSAG00000016356R3HDM110089.710Chlorocebus_sabaeus
ENSMUSG00000056211R3hdm18875.853ENSCHOG00000013638R3HDM19175.591Choloepus_hoffmanni
ENSMUSG00000056211R3hdm19275.737ENSCPBG00000009645R3HDM110090.775Chrysemys_picta_bellii
ENSMUSG00000056211R3hdm110093.724ENSCANG00000034748R3HDM110086.983Colobus_angolensis_palliatus
ENSMUSG00000056211R3hdm19996.892ENSCGRG00001012357R3hdm19796.823Cricetulus_griseus_chok1gshd
ENSMUSG00000056211R3hdm110098.606ENSCGRG00000012080R3hdm110098.606Cricetulus_griseus_crigri
ENSMUSG00000056211R3hdm110058.923ENSCSEG00000008944r3hdm19942.896Cynoglossus_semilaevis
ENSMUSG00000056211R3hdm110064.082ENSCVAG00000007582r3hdm19947.059Cyprinodon_variegatus
ENSMUSG00000056211R3hdm19350.554ENSDARG00000061081arpp219535.795Danio_rerio
ENSMUSG00000056211R3hdm19986.885ENSDNOG00000000771R3HDM110084.326Dasypus_novemcinctus
ENSMUSG00000056211R3hdm110096.167ENSDORG00000027689-10096.167Dipodomys_ordii
ENSMUSG00000056211R3hdm110086.047ENSETEG00000013606R3HDM110077.113Echinops_telfairi
ENSMUSG00000056211R3hdm18354.902ENSEBUG00000014746arpp219741.254Eptatretus_burgeri
ENSMUSG00000056211R3hdm110094.979ENSEASG00005007392R3HDM110094.581Equus_asinus_asinus
ENSMUSG00000056211R3hdm110095.122ENSECAG00000019114R3HDM110094.581Equus_caballus
ENSMUSG00000056211R3hdm110077.741ENSEEUG00000012589R3HDM18383.398Erinaceus_europaeus
ENSMUSG00000056211R3hdm17769.196ENSELUG00000014413r3hdm110050.968Esox_lucius
ENSMUSG00000056211R3hdm17780.000ENSELUG00000004909R3HDM19952.936Esox_lucius
ENSMUSG00000056211R3hdm110094.561ENSFCAG00000027113R3HDM110095.074Felis_catus
ENSMUSG00000056211R3hdm19979.963ENSFALG00000013731R3HDM19368.733Ficedula_albicollis
ENSMUSG00000056211R3hdm110094.077ENSFDAG00000016478R3HDM110094.077Fukomys_damarensis
ENSMUSG00000056211R3hdm110065.870ENSFHEG00000018713r3hdm19946.728Fundulus_heteroclitus
ENSMUSG00000056211R3hdm17871.353ENSGMOG00000006042-7467.174Gadus_morhua
ENSMUSG00000056211R3hdm110082.008ENSGALG00000012246R3HDM19985.574Gallus_gallus
ENSMUSG00000056211R3hdm110064.113ENSGAFG00000006203r3hdm19944.693Gambusia_affinis
ENSMUSG00000056211R3hdm18072.034ENSGACG00000014925r3hdm19948.282Gasterosteus_aculeatus
ENSMUSG00000056211R3hdm19782.759ENSGAGG00000007840R3HDM19683.042Gopherus_agassizii
ENSMUSG00000056211R3hdm110094.774ENSGGOG00000008156R3HDM110087.500Gorilla_gorilla
ENSMUSG00000056211R3hdm110062.876ENSHBUG00000015737R3HDM19058.015Haplochromis_burtoni
ENSMUSG00000056211R3hdm110094.077ENSHGLG00000015718R3HDM110094.077Heterocephalus_glaber_female
ENSMUSG00000056211R3hdm19969.492ENSHGLG00100015374-10065.727Heterocephalus_glaber_male
ENSMUSG00000056211R3hdm110093.728ENSHGLG00100003184-10093.728Heterocephalus_glaber_male
ENSMUSG00000056211R3hdm110059.751ENSHCOG00000013366r3hdm18860.000Hippocampus_comes
ENSMUSG00000056211R3hdm16057.241ENSHCOG00000005036-5682.500Hippocampus_comes
ENSMUSG00000056211R3hdm110069.355ENSIPUG00000001676R3HDM19965.476Ictalurus_punctatus
ENSMUSG00000056211R3hdm110063.600ENSIPUG00000013629r3hdm19569.159Ictalurus_punctatus
ENSMUSG00000056211R3hdm16957.143ENSIPUG00000020552arpp218533.642Ictalurus_punctatus
ENSMUSG00000056211R3hdm110094.774ENSSTOG00000007572R3HDM110094.774Ictidomys_tridecemlineatus
ENSMUSG00000056211R3hdm110095.122ENSJJAG00000018208-10095.122Jaculus_jaculus
ENSMUSG00000056211R3hdm15675.439ENSKMAG00000013373-8675.439Kryptolebias_marmoratus
ENSMUSG00000056211R3hdm110062.857ENSLBEG00000027981-9460.820Labrus_bergylta
ENSMUSG00000056211R3hdm110074.675ENSLACG00000005334R3HDM19971.975Latimeria_chalumnae
ENSMUSG00000056211R3hdm19972.697ENSLOCG00000001641r3hdm110066.264Lepisosteus_oculatus
ENSMUSG00000056211R3hdm19992.505ENSLAFG00000009065R3HDM110090.396Loxodonta_africana
ENSMUSG00000056211R3hdm110094.561ENSMFAG00000030331R3HDM110095.074Macaca_fascicularis
ENSMUSG00000056211R3hdm110094.561ENSMMUG00000009844R3HDM110086.415Macaca_mulatta
ENSMUSG00000056211R3hdm110094.561ENSMNEG00000027793R3HDM110095.074Macaca_nemestrina
ENSMUSG00000056211R3hdm110094.561ENSMLEG00000043189R3HDM110087.412Mandrillus_leucophaeus
ENSMUSG00000056211R3hdm110065.188ENSMAMG00000004532r3hdm19947.398Mastacembelus_armatus
ENSMUSG00000056211R3hdm110062.876ENSMZEG00005003157r3hdm19947.163Maylandia_zebra
ENSMUSG00000056211R3hdm110078.405ENSMGAG00000012461R3HDM110073.275Meleagris_gallopavo
ENSMUSG00000056211R3hdm110098.955ENSMAUG00000010315R3hdm110098.955Mesocricetus_auratus
ENSMUSG00000056211R3hdm110094.142ENSMICG00000005900-10087.434Microcebus_murinus
ENSMUSG00000056211R3hdm110093.724ENSMICG00000042655-10084.729Microcebus_murinus
ENSMUSG00000056211R3hdm110098.606ENSMOCG00000019833-10098.606Microtus_ochrogaster
ENSMUSG00000056211R3hdm110081.731ENSMODG00000000923R3HDM19778.021Monodelphis_domestica
ENSMUSG00000056211R3hdm110065.646ENSMALG00000009000r3hdm110045.470Monopterus_albus
ENSMUSG00000056211R3hdm1100100.000MGP_CAROLIEiJ_G0014543R3hdm1100100.000Mus_caroli
ENSMUSG00000056211R3hdm1100100.000MGP_PahariEiJ_G0027779R3hdm1100100.000Mus_pahari
ENSMUSG00000056211R3hdm1100100.000MGP_SPRETEiJ_G0015350R3hdm1100100.000Mus_spretus
ENSMUSG00000056211R3hdm19993.727ENSMPUG00000002412R3HDM110088.458Mustela_putorius_furo
ENSMUSG00000056211R3hdm19992.804ENSMLUG00000013824R3HDM110087.182Myotis_lucifugus
ENSMUSG00000056211R3hdm110095.470ENSNGAG00000001313-10095.470Nannospalax_galili
ENSMUSG00000056211R3hdm110093.724ENSNLEG00000008622R3HDM110087.412Nomascus_leucogenys
ENSMUSG00000056211R3hdm19474.612ENSMEUG00000011784R3HDM110068.079Notamacropus_eugenii
ENSMUSG00000056211R3hdm110094.774ENSODEG00000008607R3HDM110094.774Octodon_degus
ENSMUSG00000056211R3hdm18071.008ENSONIG00000012017r3hdm19845.617Oreochromis_niloticus
ENSMUSG00000056211R3hdm110085.050ENSOANG00000007987R3HDM110076.775Ornithorhynchus_anatinus
ENSMUSG00000056211R3hdm19993.727ENSOCUG00000017366R3HDM19886.922Oryctolagus_cuniculus
ENSMUSG00000056211R3hdm110065.188ENSORLG00000004297r3hdm19946.698Oryzias_latipes
ENSMUSG00000056211R3hdm110065.188ENSORLG00020019252-9360.526Oryzias_latipes_hni
ENSMUSG00000056211R3hdm110065.188ENSORLG00015017355r3hdm19946.837Oryzias_latipes_hsok
ENSMUSG00000056211R3hdm110063.279ENSOMEG00000003882-9458.126Oryzias_melastigma
ENSMUSG00000056211R3hdm19993.358ENSOGAG00000003136R3HDM110087.753Otolemur_garnettii
ENSMUSG00000056211R3hdm19993.173ENSOARG00000010788R3HDM110087.048Ovis_aries
ENSMUSG00000056211R3hdm110094.561ENSPPAG00000027858R3HDM110087.610Pan_paniscus
ENSMUSG00000056211R3hdm110094.561ENSPPRG00000002626R3HDM110088.546Panthera_pardus
ENSMUSG00000056211R3hdm110094.561ENSPTIG00000016581R3HDM110088.282Panthera_tigris_altaica
ENSMUSG00000056211R3hdm110094.561ENSPTRG00000012494R3HDM110086.555Pan_troglodytes
ENSMUSG00000056211R3hdm110094.561ENSPANG00000026448R3HDM110087.412Papio_anubis
ENSMUSG00000056211R3hdm110066.207ENSPKIG00000011224R3HDM19063.504Paramormyrops_kingsleyae
ENSMUSG00000056211R3hdm19766.549ENSPKIG00000004328r3hdm19174.921Paramormyrops_kingsleyae
ENSMUSG00000056211R3hdm110079.402ENSPSIG00000012915R3HDM110074.055Pelodiscus_sinensis
ENSMUSG00000056211R3hdm16878.395ENSPMGG00000011264-9153.687Periophthalmus_magnuspinnatus
ENSMUSG00000056211R3hdm110098.606ENSPEMG00000015187R3hdm110098.606Peromyscus_maniculatus_bairdii
ENSMUSG00000056211R3hdm110090.417ENSPCIG00000002491R3HDM110089.461Phascolarctos_cinereus
ENSMUSG00000056211R3hdm110063.576ENSPFOG00000015036r3hdm19947.179Poecilia_formosa
ENSMUSG00000056211R3hdm110063.306ENSPLAG00000018042r3hdm19944.320Poecilia_latipinna
ENSMUSG00000056211R3hdm110063.306ENSPMEG00000023947r3hdm19944.455Poecilia_mexicana
ENSMUSG00000056211R3hdm110064.189ENSPREG00000007902r3hdm18862.233Poecilia_reticulata
ENSMUSG00000056211R3hdm110086.719ENSPPYG00000012815R3HDM110085.552Pongo_abelii
ENSMUSG00000056211R3hdm110086.711ENSPCAG00000006208R3HDM110075.947Procavia_capensis
ENSMUSG00000056211R3hdm110087.654ENSPCOG00000012698R3HDM110085.325Propithecus_coquereli
ENSMUSG00000056211R3hdm19987.823ENSPVAG00000006098R3HDM110078.303Pteropus_vampyrus
ENSMUSG00000056211R3hdm110062.876ENSPNYG00000008701-9759.569Pundamilia_nyererei
ENSMUSG00000056211R3hdm17581.283ENSPNAG00000005436R3HDM19975.884Pygocentrus_nattereri
ENSMUSG00000056211R3hdm19363.109ENSPNAG00000013952r3hdm110063.023Pygocentrus_nattereri
ENSMUSG00000056211R3hdm17955.702ENSPNAG00000004162arpp215757.600Pygocentrus_nattereri
ENSMUSG00000056211R3hdm110097.533ENSRNOG00000004099R3hdm110097.533Rattus_norvegicus
ENSMUSG00000056211R3hdm110086.047ENSRBIG00000033317R3HDM110097.786Rhinopithecus_bieti
ENSMUSG00000056211R3hdm110094.561ENSRROG00000034534R3HDM110086.719Rhinopithecus_roxellana
ENSMUSG00000056211R3hdm110092.469ENSSBOG00000020389R3HDM110087.676Saimiri_boliviensis_boliviensis
ENSMUSG00000056211R3hdm110090.417ENSSHAG00000016999R3HDM110079.507Sarcophilus_harrisii
ENSMUSG00000056211R3hdm110070.790ENSSFOG00015014134r3hdm110070.073Scleropages_formosus
ENSMUSG00000056211R3hdm110068.163ENSSFOG00015019851-9956.312Scleropages_formosus
ENSMUSG00000056211R3hdm110062.069ENSSMAG00000001669r3hdm19942.525Scophthalmus_maximus
ENSMUSG00000056211R3hdm110064.626ENSSDUG00000010749r3hdm19945.421Seriola_dumerili
ENSMUSG00000056211R3hdm110063.333ENSSLDG00000004499r3hdm19945.196Seriola_lalandi_dorsalis
ENSMUSG00000056211R3hdm110077.409ENSSARG00000000352-6981.728Sorex_araneus
ENSMUSG00000056211R3hdm19585.413ENSSPUG00000004167R3HDM110076.383Sphenodon_punctatus
ENSMUSG00000056211R3hdm110065.870ENSSPAG00000004648r3hdm19947.228Stegastes_partitus
ENSMUSG00000056211R3hdm110094.425ENSSSCG00000015692R3HDM110090.933Sus_scrofa
ENSMUSG00000056211R3hdm19979.412ENSTGUG00000011750R3HDM110069.851Taeniopygia_guttata
ENSMUSG00000056211R3hdm18960.356ENSTRUG00000011654r3hdm19346.186Takifugu_rubripes
ENSMUSG00000056211R3hdm18965.926ENSTNIG00000010362r3hdm19944.000Tetraodon_nigroviridis
ENSMUSG00000056211R3hdm19488.155ENSTTRG00000003935R3HDM110080.982Tursiops_truncatus
ENSMUSG00000056211R3hdm110094.979ENSUAMG00000024806R3HDM19991.144Ursus_americanus
ENSMUSG00000056211R3hdm110094.979ENSUMAG00000005552R3HDM110085.222Ursus_maritimus
ENSMUSG00000056211R3hdm18695.973ENSVPAG00000007333R3HDM19385.965Vicugna_pacos
ENSMUSG00000056211R3hdm110094.774ENSVVUG00000006457R3HDM110091.542Vulpes_vulpes
ENSMUSG00000056211R3hdm110067.774ENSXETG00000019330r3hdm110063.654Xenopus_tropicalis
ENSMUSG00000056211R3hdm17275.978ENSXCOG00000017448r3hdm19447.439Xiphophorus_couchianus
ENSMUSG00000056211R3hdm110064.548ENSXMAG00000007885r3hdm19947.217Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0005575cellular_component-NDComponent
GO:0008150biological_process-NDProcess

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us