EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000056608 (Gene tree)
Gene ID: 109151
Gene Symbol: Chd9
Alias: 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013
Full Name: chromodomain helicase DNA binding protein 9
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 226165 bases
Position: chr8:90828352-91054516
Accession: 1924001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000147741	ResIII	PF04851.15	8.6e-07	1	1
ENSMUSP00000105243	ResIII	PF04851.15	6e-06	1	1
ENSMUSP00000148088	ResIII	PF04851.15	6e-06	1	1
ENSMUSP00000046356	ResIII	PF04851.15	6.1e-06	1	1
ENSMUSP00000046356	BRK	PF07533.16	3.9e-30	1	2
ENSMUSP00000046356	BRK	PF07533.16	3.9e-30	2	2
ENSMUSP00000105243	BRK	PF07533.16	4e-30	1	2
ENSMUSP00000105243	BRK	PF07533.16	4e-30	2	2
ENSMUSP00000148088	BRK	PF07533.16	4e-30	1	2
ENSMUSP00000148088	BRK	PF07533.16	4e-30	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000048665	-	12008	XM_017312520	ENSMUSP00000046356	2869 (aa)	XP_017168009	Q8BYH8
ENSMUST00000209203	-	9213	-	ENSMUSP00000147407	1853 (aa)	-	A0A1B0GR76
ENSMUST00000209746	-	259	-	ENSMUSP00000147296	59 (aa)	-	A0A1B0GQX8
ENSMUST00000211403	-	2279	-	ENSMUSP00000147839	641 (aa)	-	A0A1B0GS89
ENSMUST00000211795	-	407	-	-	- (aa)	-	-
ENSMUST00000209474	-	759	-	-	- (aa)	-	-
ENSMUST00000211034	-	799	-	-	- (aa)	-	-
ENSMUST00000211552	-	3285	-	-	- (aa)	-	-
ENSMUST00000209341	-	2632	-	-	- (aa)	-	-
ENSMUST00000209531	-	607	-	-	- (aa)	-	-
ENSMUST00000209423	-	9419	XM_006530569	ENSMUSP00000148088	2885 (aa)	XP_006530632	Q8BYH8
ENSMUST00000109614	-	11565	XM_006530570	ENSMUSP00000105243	2885 (aa)	XP_006530633	Q8BYH8
ENSMUST00000211215	-	728	-	-	- (aa)	-	-
ENSMUST00000210887	-	4323	-	-	- (aa)	-	-
ENSMUST00000210947	-	2964	-	ENSMUSP00000147741	874 (aa)	-	A0A1B0GS03

Gene Model

Click here to download ENSMUSG00000056608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000056608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000056608	Chd9	96	66.667	ENSMUSG00000057133	Chd6	91	67.864
ENSMUSG00000056608	Chd9	82	76.430	ENSMUSG00000041235	Chd7	94	54.400
ENSMUSG00000056608	Chd9	56	40.430	ENSMUSG00000024921	Smarca2	71	33.149
ENSMUSG00000056608	Chd9	75	39.515	ENSMUSG00000023852	Chd1	78	36.626
ENSMUSG00000056608	Chd9	57	43.687	ENSMUSG00000031099	Smarca1	72	40.306
ENSMUSG00000056608	Chd9	55	42.593	ENSMUSG00000028089	Chd1l	51	42.593
ENSMUSG00000056608	Chd9	54	30.286	ENSMUSG00000078773	Rad54b	56	30.286
ENSMUSG00000056608	Chd9	95	72.865	ENSMUSG00000053754	Chd8	89	60.928
ENSMUSG00000056608	Chd9	55	37.255	ENSMUSG00000025001	Hells	72	36.672
ENSMUSG00000056608	Chd9	58	43.590	ENSMUSG00000031715	Smarca5	51	42.179
ENSMUSG00000056608	Chd9	54	30.966	ENSMUSG00000028702	Rad54l	66	31.164

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000056608	Chd9	100	95.538	ENSG00000177200	CHD9	100	100.000	Homo_sapiens
ENSMUSG00000056608	Chd9	99	76.855	ENSAPOG00000023034	chd9	98	68.013	Acanthochromis_polyacanthus
ENSMUSG00000056608	Chd9	99	95.145	ENSAMEG00000016232	CHD9	99	91.048	Ailuropoda_melanoleuca
ENSMUSG00000056608	Chd9	94	74.668	ENSACIG00000004097	chd9	73	61.636	Amphilophus_citrinellus
ENSMUSG00000056608	Chd9	99	77.076	ENSAOCG00000005487	chd9	99	68.244	Amphiprion_ocellaris
ENSMUSG00000056608	Chd9	99	77.076	ENSAPEG00000009859	chd9	98	68.136	Amphiprion_percula
ENSMUSG00000056608	Chd9	95	81.152	ENSATEG00000002748	chd9	99	61.675	Anabas_testudineus
ENSMUSG00000056608	Chd9	99	89.988	ENSAPLG00000002826	CHD9	74	82.880	Anas_platyrhynchos
ENSMUSG00000056608	Chd9	99	88.723	ENSACAG00000016150	CHD9	98	78.552	Anolis_carolinensis
ENSMUSG00000056608	Chd9	99	95.607	ENSANAG00000015630	CHD9	98	94.139	Aotus_nancymaae
ENSMUSG00000056608	Chd9	94	79.036	ENSACLG00000016899	chd9	73	62.529	Astatotilapia_calliptera
ENSMUSG00000056608	Chd9	99	76.345	ENSAMXG00000005652	chd9	99	59.473	Astyanax_mexicanus
ENSMUSG00000056608	Chd9	99	95.260	ENSBTAG00000002287	CHD9	99	89.656	Bos_taurus
ENSMUSG00000056608	Chd9	99	95.376	ENSCJAG00000001573	CHD9	98	94.505	Callithrix_jacchus
ENSMUSG00000056608	Chd9	99	95.145	ENSCAFG00000009699	CHD9	99	90.420	Canis_familiaris
ENSMUSG00000056608	Chd9	99	95.145	ENSCAFG00020002879	CHD9	98	94.872	Canis_lupus_dingo
ENSMUSG00000056608	Chd9	99	93.757	ENSCHIG00000021000	CHD9	64	90.450	Capra_hircus
ENSMUSG00000056608	Chd9	99	94.913	ENSTSYG00000007693	CHD9	98	94.872	Carlito_syrichta
ENSMUSG00000056608	Chd9	91	94.545	ENSCAPG00000011604	CHD9	81	74.602	Cavia_aperea
ENSMUSG00000056608	Chd9	99	87.303	ENSCPOG00000036544	CHD9	99	87.391	Cavia_porcellus
ENSMUSG00000056608	Chd9	99	95.376	ENSCCAG00000036178	CHD9	98	93.773	Cebus_capucinus
ENSMUSG00000056608	Chd9	99	95.260	ENSCATG00000036753	CHD9	98	94.505	Cercocebus_atys
ENSMUSG00000056608	Chd9	100	94.966	ENSCLAG00000007137	CHD9	100	94.966	Chinchilla_lanigera
ENSMUSG00000056608	Chd9	99	95.260	ENSCSAG00000005311	CHD9	99	90.773	Chlorocebus_sabaeus
ENSMUSG00000056608	Chd9	76	96.615	ENSCHOG00000003935	CHD9	76	96.154	Choloepus_hoffmanni
ENSMUSG00000056608	Chd9	99	90.449	ENSCPBG00000012459	CHD9	99	90.390	Chrysemys_picta_bellii
ENSMUSG00000056608	Chd9	99	95.145	ENSCANG00000030349	CHD9	98	94.505	Colobus_angolensis_palliatus
ENSMUSG00000056608	Chd9	99	96.994	ENSCGRG00001016150	Chd9	100	93.109	Cricetulus_griseus_chok1gshd
ENSMUSG00000056608	Chd9	100	97.140	ENSCGRG00000012850	Chd9	100	97.140	Cricetulus_griseus_crigri
ENSMUSG00000056608	Chd9	94	78.718	ENSCSEG00000009209	chd9	94	67.824	Cynoglossus_semilaevis
ENSMUSG00000056608	Chd9	94	80.751	ENSCVAG00000016195	chd9	87	67.715	Cyprinodon_variegatus
ENSMUSG00000056608	Chd9	99	75.111	ENSDARG00000074498	chd9	69	72.943	Danio_rerio
ENSMUSG00000056608	Chd9	92	94.750	ENSDNOG00000006045	CHD9	99	91.073	Dasypus_novemcinctus
ENSMUSG00000056608	Chd9	69	90.822	ENSDORG00000008523	-	99	91.608	Dipodomys_ordii
ENSMUSG00000056608	Chd9	93	95.789	ENSETEG00000009565	CHD9	93	95.789	Echinops_telfairi
ENSMUSG00000056608	Chd9	99	95.145	ENSEASG00005014832	CHD9	99	94.079	Equus_asinus_asinus
ENSMUSG00000056608	Chd9	99	95.260	ENSECAG00000011505	CHD9	99	90.389	Equus_caballus
ENSMUSG00000056608	Chd9	83	96.133	ENSEEUG00000014515	CHD9	87	96.133	Erinaceus_europaeus
ENSMUSG00000056608	Chd9	97	78.463	ENSELUG00000006031	chd9	97	67.055	Esox_lucius
ENSMUSG00000056608	Chd9	99	94.913	ENSFCAG00000022534	CHD9	98	94.505	Felis_catus
ENSMUSG00000056608	Chd9	100	90.080	ENSFALG00000013276	CHD9	99	85.202	Ficedula_albicollis
ENSMUSG00000056608	Chd9	99	94.451	ENSFDAG00000021037	CHD9	99	90.653	Fukomys_damarensis
ENSMUSG00000056608	Chd9	99	76.589	ENSFHEG00000006068	chd9	95	69.869	Fundulus_heteroclitus
ENSMUSG00000056608	Chd9	95	75.534	ENSGMOG00000006040	chd9	83	75.984	Gadus_morhua
ENSMUSG00000056608	Chd9	99	89.758	ENSGALG00000039178	CHD9	99	81.650	Gallus_gallus
ENSMUSG00000056608	Chd9	99	76.106	ENSGAFG00000010014	chd9	98	67.552	Gambusia_affinis
ENSMUSG00000056608	Chd9	94	79.614	ENSGACG00000016694	chd9	96	73.902	Gasterosteus_aculeatus
ENSMUSG00000056608	Chd9	99	95.491	ENSGGOG00000014816	CHD9	98	94.872	Gorilla_gorilla
ENSMUSG00000056608	Chd9	99	74.972	ENSHBUG00000023322	chd9	95	70.280	Haplochromis_burtoni
ENSMUSG00000056608	Chd9	100	95.080	ENSHGLG00000014938	CHD9	100	95.080	Heterocephalus_glaber_female
ENSMUSG00000056608	Chd9	100	95.080	ENSHGLG00100001011	-	100	95.080	Heterocephalus_glaber_male
ENSMUSG00000056608	Chd9	99	74.945	ENSHCOG00000000937	chd9	95	67.706	Hippocampus_comes
ENSMUSG00000056608	Chd9	95	81.513	ENSIPUG00000016448	chd9	97	72.628	Ictalurus_punctatus
ENSMUSG00000056608	Chd9	100	95.309	ENSSTOG00000022273	CHD9	100	95.309	Ictidomys_tridecemlineatus
ENSMUSG00000056608	Chd9	69	90.402	ENSJJAG00000015741	-	99	91.641	Jaculus_jaculus
ENSMUSG00000056608	Chd9	99	76.164	ENSKMAG00000016784	chd9	96	60.983	Kryptolebias_marmoratus
ENSMUSG00000056608	Chd9	99	75.801	ENSLBEG00000012077	chd9	95	68.161	Labrus_bergylta
ENSMUSG00000056608	Chd9	99	75.854	ENSLACG00000005557	CHD9	99	69.457	Latimeria_chalumnae
ENSMUSG00000056608	Chd9	100	80.135	ENSLOCG00000007225	chd9	99	72.332	Lepisosteus_oculatus
ENSMUSG00000056608	Chd9	99	94.220	ENSLAFG00000015374	CHD9	99	89.868	Loxodonta_africana
ENSMUSG00000056608	Chd9	99	95.260	ENSMFAG00000041354	CHD9	98	94.505	Macaca_fascicularis
ENSMUSG00000056608	Chd9	99	95.260	ENSMMUG00000016310	CHD9	98	94.505	Macaca_mulatta
ENSMUSG00000056608	Chd9	99	95.260	ENSMNEG00000031494	CHD9	100	91.208	Macaca_nemestrina
ENSMUSG00000056608	Chd9	99	95.260	ENSMLEG00000043219	CHD9	98	94.505	Mandrillus_leucophaeus
ENSMUSG00000056608	Chd9	94	81.016	ENSMAMG00000003909	chd9	99	60.622	Mastacembelus_armatus
ENSMUSG00000056608	Chd9	99	76.523	ENSMZEG00005006581	chd9	67	74.539	Maylandia_zebra
ENSMUSG00000056608	Chd9	99	79.247	ENSMGAG00000004642	CHD9	72	78.086	Meleagris_gallopavo
ENSMUSG00000056608	Chd9	100	96.453	ENSMAUG00000011087	-	100	96.453	Mesocricetus_auratus
ENSMUSG00000056608	Chd9	99	95.838	ENSMICG00000016679	CHD9	98	94.505	Microcebus_murinus
ENSMUSG00000056608	Chd9	100	96.911	ENSMOCG00000018583	-	100	96.911	Microtus_ochrogaster
ENSMUSG00000056608	Chd9	95	79.527	ENSMMOG00000016406	chd9	74	62.483	Mola_mola
ENSMUSG00000056608	Chd9	67	95.904	ENSMODG00000013142	-	99	90.784	Monodelphis_domestica
ENSMUSG00000056608	Chd9	95	78.622	ENSMALG00000013306	chd9	99	60.228	Monopterus_albus
ENSMUSG00000056608	Chd9	99	99.769	MGP_CAROLIEiJ_G0031364	Chd9	100	98.477	Mus_caroli
ENSMUSG00000056608	Chd9	99	98.960	MGP_PahariEiJ_G0022964	Chd9	100	95.722	Mus_pahari
ENSMUSG00000056608	Chd9	100	99.307	MGP_SPRETEiJ_G0032483	Chd9	100	99.307	Mus_spretus
ENSMUSG00000056608	Chd9	99	95.376	ENSMPUG00000003285	CHD9	99	90.174	Mustela_putorius_furo
ENSMUSG00000056608	Chd9	99	93.873	ENSMLUG00000004456	CHD9	99	89.649	Myotis_lucifugus
ENSMUSG00000056608	Chd9	100	95.767	ENSNGAG00000019957	-	100	95.767	Nannospalax_galili
ENSMUSG00000056608	Chd9	99	76.523	ENSNBRG00000009423	chd9	67	74.347	Neolamprologus_brichardi
ENSMUSG00000056608	Chd9	99	95.376	ENSNLEG00000001026	CHD9	100	91.418	Nomascus_leucogenys
ENSMUSG00000056608	Chd9	82	94.118	ENSMEUG00000008222	-	84	94.118	Notamacropus_eugenii
ENSMUSG00000056608	Chd9	83	100.000	ENSOPRG00000011168	CHD9	85	96.286	Ochotona_princeps
ENSMUSG00000056608	Chd9	99	94.798	ENSODEG00000004466	CHD9	99	89.309	Octodon_degus
ENSMUSG00000056608	Chd9	94	81.137	ENSONIG00000002816	chd9	87	62.634	Oreochromis_niloticus
ENSMUSG00000056608	Chd9	99	91.234	ENSOANG00000013401	CHD9	99	83.778	Ornithorhynchus_anatinus
ENSMUSG00000056608	Chd9	100	95.423	ENSOCUG00000001016	CHD9	98	92.899	Oryctolagus_cuniculus
ENSMUSG00000056608	Chd9	99	76.897	ENSORLG00000013810	chd9	98	66.964	Oryzias_latipes
ENSMUSG00000056608	Chd9	94	79.805	ENSORLG00020020665	chd9	99	60.291	Oryzias_latipes_hni
ENSMUSG00000056608	Chd9	99	76.615	ENSORLG00015019126	chd9	94	68.856	Oryzias_latipes_hsok
ENSMUSG00000056608	Chd9	94	79.490	ENSOMEG00000015978	chd9	99	62.134	Oryzias_melastigma
ENSMUSG00000056608	Chd9	99	95.145	ENSOGAG00000002110	CHD9	99	89.452	Otolemur_garnettii
ENSMUSG00000056608	Chd9	99	95.260	ENSOARG00000017664	CHD9	99	89.390	Ovis_aries
ENSMUSG00000056608	Chd9	98	92.200	ENSPPAG00000039388	-	99	91.080	Pan_paniscus
ENSMUSG00000056608	Chd9	99	94.913	ENSPPRG00000004801	CHD9	98	94.505	Panthera_pardus
ENSMUSG00000056608	Chd9	99	94.798	ENSPTIG00000021854	CHD9	99	88.924	Panthera_tigris_altaica
ENSMUSG00000056608	Chd9	99	95.376	ENSPTRG00000008113	CHD9	98	94.872	Pan_troglodytes
ENSMUSG00000056608	Chd9	100	95.423	ENSPANG00000019307	CHD9	98	94.505	Papio_anubis
ENSMUSG00000056608	Chd9	99	80.578	ENSPKIG00000021876	chd9	99	69.302	Paramormyrops_kingsleyae
ENSMUSG00000056608	Chd9	95	76.960	ENSPKIG00000025401	-	71	62.370	Paramormyrops_kingsleyae
ENSMUSG00000056608	Chd9	99	87.212	ENSPSIG00000008099	CHD9	99	81.361	Pelodiscus_sinensis
ENSMUSG00000056608	Chd9	53	76.609	ENSPMAG00000006035	-	72	67.120	Petromyzon_marinus
ENSMUSG00000056608	Chd9	100	91.553	ENSPCIG00000017215	CHD9	97	88.422	Phascolarctos_cinereus
ENSMUSG00000056608	Chd9	94	80.993	ENSPFOG00000015839	chd9	96	60.642	Poecilia_formosa
ENSMUSG00000056608	Chd9	100	75.847	ENSPLAG00000011118	chd9	95	69.715	Poecilia_latipinna
ENSMUSG00000056608	Chd9	94	78.935	ENSPMEG00000015106	chd9	96	61.233	Poecilia_mexicana
ENSMUSG00000056608	Chd9	99	76.217	ENSPREG00000006473	chd9	95	69.311	Poecilia_reticulata
ENSMUSG00000056608	Chd9	99	95.491	ENSPPYG00000007348	CHD9	99	90.486	Pongo_abelii
ENSMUSG00000056608	Chd9	99	92.593	ENSPCAG00000007564	CHD9	86	93.474	Procavia_capensis
ENSMUSG00000056608	Chd9	99	95.954	ENSPCOG00000028433	CHD9	98	94.872	Propithecus_coquereli
ENSMUSG00000056608	Chd9	99	85.566	ENSPVAG00000015617	CHD9	97	86.237	Pteropus_vampyrus
ENSMUSG00000056608	Chd9	99	76.523	ENSPNYG00000010947	chd9	67	74.406	Pundamilia_nyererei
ENSMUSG00000056608	Chd9	99	77.928	ENSPNAG00000024141	chd9	99	68.883	Pygocentrus_nattereri
ENSMUSG00000056608	Chd9	99	96.532	ENSRNOG00000049302	Chd9	100	95.035	Rattus_norvegicus
ENSMUSG00000056608	Chd9	99	95.255	ENSRBIG00000035553	CHD9	98	94.505	Rhinopithecus_bieti
ENSMUSG00000056608	Chd9	96	95.125	ENSRROG00000033278	CHD9	98	94.505	Rhinopithecus_roxellana
ENSMUSG00000056608	Chd9	99	95.376	ENSSBOG00000030240	CHD9	98	94.139	Saimiri_boliviensis_boliviensis
ENSMUSG00000056608	Chd9	99	91.119	ENSSHAG00000002719	CHD9	99	84.442	Sarcophilus_harrisii
ENSMUSG00000056608	Chd9	99	79.769	ENSSFOG00015020209	chd9	99	62.111	Scleropages_formosus
ENSMUSG00000056608	Chd9	99	77.590	ENSSFOG00015001327	chd9	66	75.862	Scleropages_formosus
ENSMUSG00000056608	Chd9	99	76.339	ENSSMAG00000008953	chd9	95	68.502	Scophthalmus_maximus
ENSMUSG00000056608	Chd9	99	77.232	ENSSDUG00000006139	chd9	95	69.311	Seriola_dumerili
ENSMUSG00000056608	Chd9	99	77.232	ENSSLDG00000017818	chd9	95	69.391	Seriola_lalandi_dorsalis
ENSMUSG00000056608	Chd9	95	96.708	ENSSARG00000010632	CHD9	71	95.205	Sorex_araneus
ENSMUSG00000056608	Chd9	99	76.744	ENSSPAG00000021649	chd9	98	67.758	Stegastes_partitus
ENSMUSG00000056608	Chd9	99	95.145	ENSSSCG00000033591	CHD9	75	91.437	Sus_scrofa
ENSMUSG00000056608	Chd9	99	89.897	ENSTGUG00000007476	CHD9	100	82.034	Taeniopygia_guttata
ENSMUSG00000056608	Chd9	95	80.120	ENSTRUG00000009125	chd9	99	60.255	Takifugu_rubripes
ENSMUSG00000056608	Chd9	68	94.737	ENSTNIG00000003825	chd9	97	62.150	Tetraodon_nigroviridis
ENSMUSG00000056608	Chd9	92	81.818	ENSTBEG00000016052	-	81	91.892	Tupaia_belangeri
ENSMUSG00000056608	Chd9	99	95.145	ENSTTRG00000012674	CHD9	90	89.923	Tursiops_truncatus
ENSMUSG00000056608	Chd9	64	88.835	ENSUAMG00000022706	CHD9	98	94.872	Ursus_americanus
ENSMUSG00000056608	Chd9	99	95.145	ENSUMAG00000004043	CHD9	98	97.015	Ursus_maritimus
ENSMUSG00000056608	Chd9	90	98.826	ENSVPAG00000001374	CHD9	97	90.343	Vicugna_pacos
ENSMUSG00000056608	Chd9	99	95.145	ENSVVUG00000019435	CHD9	99	90.420	Vulpes_vulpes
ENSMUSG00000056608	Chd9	99	84.580	ENSXETG00000000349	chd9	96	74.417	Xenopus_tropicalis
ENSMUSG00000056608	Chd9	95	80.406	ENSXCOG00000012997	chd9	95	69.873	Xiphophorus_couchianus
ENSMUSG00000056608	Chd9	99	76.106	ENSXMAG00000016192	chd9	95	70.021	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016817	hydrolase activity, acting on acid anhydrides	-	IEA	Function