EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000056820 (Gene tree)
Gene ID: 53424
Gene Symbol: Tsnax
Alias: Trax
Full Name: translin-associated factor X
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 21196 bases
Position: chr8:125012997-125034192
Accession: 1855672
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000075290	Translin	PF01997.16	7.8e-62	1	1
ENSMUSP00000148470	Translin	PF01997.16	2.1e-28	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000212603	-	2169	-	ENSMUSP00000148470	168 (aa)	-	A0A1D5RLR0
ENSMUST00000075896	-	2391	-	ENSMUSP00000075290	290 (aa)	-	Q9QZE7

Gene Model

Click here to download ENSMUSG00000056820's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000056820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000056820	Tsnax	100	90.690	ENSG00000116918	TSNAX	100	90.690	Homo_sapiens
ENSMUSG00000056820	Tsnax	99	63.823	ENSAPOG00000011188	tsnax	99	63.823	Acanthochromis_polyacanthus
ENSMUSG00000056820	Tsnax	100	91.379	ENSAMEG00000002637	-	100	91.379	Ailuropoda_melanoleuca
ENSMUSG00000056820	Tsnax	99	63.322	ENSACIG00000005910	tsnax	99	63.322	Amphilophus_citrinellus
ENSMUSG00000056820	Tsnax	99	63.668	ENSAOCG00000012857	tsnax	99	63.668	Amphiprion_ocellaris
ENSMUSG00000056820	Tsnax	99	64.014	ENSAPEG00000024161	tsnax	99	67.816	Amphiprion_percula
ENSMUSG00000056820	Tsnax	99	66.436	ENSATEG00000014674	tsnax	99	66.436	Anabas_testudineus
ENSMUSG00000056820	Tsnax	100	77.320	ENSAPLG00000013433	-	100	77.320	Anas_platyrhynchos
ENSMUSG00000056820	Tsnax	100	78.007	ENSACAG00000002787	-	100	78.351	Anolis_carolinensis
ENSMUSG00000056820	Tsnax	100	91.724	ENSANAG00000023733	-	100	91.724	Aotus_nancymaae
ENSMUSG00000056820	Tsnax	72	65.238	ENSACLG00000023252	tsnax	86	65.238	Astatotilapia_calliptera
ENSMUSG00000056820	Tsnax	100	61.379	ENSAMXG00000024558	tsnax	100	61.379	Astyanax_mexicanus
ENSMUSG00000056820	Tsnax	100	90.690	ENSBTAG00000047434	TSNAX	100	90.690	Bos_taurus
ENSMUSG00000056820	Tsnax	100	91.724	ENSCJAG00000039956	-	100	91.724	Callithrix_jacchus
ENSMUSG00000056820	Tsnax	100	91.724	ENSCAFG00000030982	-	100	91.724	Canis_familiaris
ENSMUSG00000056820	Tsnax	100	91.724	ENSCAFG00020027186	-	100	91.724	Canis_lupus_dingo
ENSMUSG00000056820	Tsnax	100	91.034	ENSCHIG00000012051	-	100	91.034	Capra_hircus
ENSMUSG00000056820	Tsnax	100	91.379	ENSTSYG00000026820	-	100	91.379	Carlito_syrichta
ENSMUSG00000056820	Tsnax	86	93.574	ENSTSYG00000014070	-	99	93.574	Carlito_syrichta
ENSMUSG00000056820	Tsnax	85	93.522	ENSCAPG00000007224	-	95	93.522	Cavia_aperea
ENSMUSG00000056820	Tsnax	100	91.724	ENSCPOG00000036257	-	100	91.724	Cavia_porcellus
ENSMUSG00000056820	Tsnax	100	91.724	ENSCCAG00000025312	-	100	91.724	Cebus_capucinus
ENSMUSG00000056820	Tsnax	100	90.000	ENSCATG00000037048	TSNAX	100	90.000	Cercocebus_atys
ENSMUSG00000056820	Tsnax	100	91.724	ENSCLAG00000004894	-	100	91.724	Chinchilla_lanigera
ENSMUSG00000056820	Tsnax	100	89.655	ENSCSAG00000010285	TSNAX	100	89.655	Chlorocebus_sabaeus
ENSMUSG00000056820	Tsnax	86	91.165	ENSCHOG00000009515	-	100	91.165	Choloepus_hoffmanni
ENSMUSG00000056820	Tsnax	100	78.351	ENSCPBG00000006086	-	100	78.351	Chrysemys_picta_bellii
ENSMUSG00000056820	Tsnax	100	90.345	ENSCANG00000018814	TSNAX	100	90.345	Colobus_angolensis_palliatus
ENSMUSG00000056820	Tsnax	100	93.448	ENSCGRG00001011132	Tsnax	100	93.448	Cricetulus_griseus_chok1gshd
ENSMUSG00000056820	Tsnax	100	93.448	ENSCGRG00000017310	Tsnax	100	93.448	Cricetulus_griseus_crigri
ENSMUSG00000056820	Tsnax	96	66.429	ENSCSEG00000013110	tsnax	99	66.429	Cynoglossus_semilaevis
ENSMUSG00000056820	Tsnax	99	55.709	ENSCVAG00000003427	tsnax	99	55.709	Cyprinodon_variegatus
ENSMUSG00000056820	Tsnax	100	64.138	ENSDARG00000115282	tsnax	100	64.138	Danio_rerio
ENSMUSG00000056820	Tsnax	99	90.657	ENSDNOG00000049219	-	99	90.657	Dasypus_novemcinctus
ENSMUSG00000056820	Tsnax	93	87.546	ENSDORG00000013537	Tsnax	99	88.390	Dipodomys_ordii
ENSMUSG00000056820	Tsnax	92	35.915	FBgn0038327	Trax	93	35.915	Drosophila_melanogaster
ENSMUSG00000056820	Tsnax	71	85.030	ENSETEG00000005204	-	71	85.030	Echinops_telfairi
ENSMUSG00000056820	Tsnax	82	58.436	ENSEBUG00000013286	tsnax	94	58.436	Eptatretus_burgeri
ENSMUSG00000056820	Tsnax	100	91.034	ENSEASG00005012828	-	100	91.034	Equus_asinus_asinus
ENSMUSG00000056820	Tsnax	100	71.034	ENSEEUG00000001465	-	100	71.034	Erinaceus_europaeus
ENSMUSG00000056820	Tsnax	100	65.436	ENSELUG00000018955	tsnax	99	65.436	Esox_lucius
ENSMUSG00000056820	Tsnax	100	91.034	ENSFCAG00000028088	-	100	91.034	Felis_catus
ENSMUSG00000056820	Tsnax	74	70.400	ENSFCAG00000039622	-	99	70.400	Felis_catus
ENSMUSG00000056820	Tsnax	97	78.445	ENSFALG00000003260	-	99	78.445	Ficedula_albicollis
ENSMUSG00000056820	Tsnax	98	92.226	ENSFDAG00000015968	-	99	92.226	Fukomys_damarensis
ENSMUSG00000056820	Tsnax	99	62.887	ENSFHEG00000005717	tsnax	98	64.906	Fundulus_heteroclitus
ENSMUSG00000056820	Tsnax	93	66.300	ENSGMOG00000018552	tsnax	99	66.300	Gadus_morhua
ENSMUSG00000056820	Tsnax	100	78.694	ENSGALG00000037177	TSNAX	100	78.694	Gallus_gallus
ENSMUSG00000056820	Tsnax	99	64.360	ENSGAFG00000005000	tsnax	99	64.360	Gambusia_affinis
ENSMUSG00000056820	Tsnax	99	62.671	ENSGACG00000004171	tsnax	99	62.671	Gasterosteus_aculeatus
ENSMUSG00000056820	Tsnax	100	78.007	ENSGAGG00000012851	-	100	78.007	Gopherus_agassizii
ENSMUSG00000056820	Tsnax	100	90.690	ENSGGOG00000039786	TSNAX	100	90.690	Gorilla_gorilla
ENSMUSG00000056820	Tsnax	99	63.668	ENSHBUG00000020612	tsnax	99	63.668	Haplochromis_burtoni
ENSMUSG00000056820	Tsnax	100	91.724	ENSHGLG00000012839	TSNAX	100	91.724	Heterocephalus_glaber_female
ENSMUSG00000056820	Tsnax	100	90.000	ENSHGLG00100000780	-	100	90.000	Heterocephalus_glaber_male
ENSMUSG00000056820	Tsnax	89	69.112	ENSHCOG00000009732	tsnax	91	69.112	Hippocampus_comes
ENSMUSG00000056820	Tsnax	99	61.672	ENSIPUG00000018757	tsnax	100	61.672	Ictalurus_punctatus
ENSMUSG00000056820	Tsnax	99	92.814	ENSSTOG00000024989	-	99	92.814	Ictidomys_tridecemlineatus
ENSMUSG00000056820	Tsnax	95	74.101	ENSJJAG00000012285	-	100	74.101	Jaculus_jaculus
ENSMUSG00000056820	Tsnax	100	89.655	ENSJJAG00000000228	-	100	89.655	Jaculus_jaculus
ENSMUSG00000056820	Tsnax	100	64.483	ENSKMAG00000010607	tsnax	100	64.483	Kryptolebias_marmoratus
ENSMUSG00000056820	Tsnax	92	70.149	ENSLBEG00000002951	-	93	70.149	Labrus_bergylta
ENSMUSG00000056820	Tsnax	99	67.474	ENSLBEG00000023264	tsnax	99	67.474	Labrus_bergylta
ENSMUSG00000056820	Tsnax	100	71.769	ENSLACG00000006294	tsnax	100	71.769	Latimeria_chalumnae
ENSMUSG00000056820	Tsnax	100	66.780	ENSLOCG00000015831	tsnax	100	66.780	Lepisosteus_oculatus
ENSMUSG00000056820	Tsnax	100	79.932	ENSLAFG00000006692	-	100	79.932	Loxodonta_africana
ENSMUSG00000056820	Tsnax	100	90.000	ENSMFAG00000038495	TSNAX	100	90.000	Macaca_fascicularis
ENSMUSG00000056820	Tsnax	98	89.697	ENSMMUG00000016204	TSNAX	89	89.697	Macaca_mulatta
ENSMUSG00000056820	Tsnax	100	90.000	ENSMNEG00000038898	TSNAX	100	90.000	Macaca_nemestrina
ENSMUSG00000056820	Tsnax	100	89.655	ENSMLEG00000004157	TSNAX	100	89.655	Mandrillus_leucophaeus
ENSMUSG00000056820	Tsnax	99	63.140	ENSMAMG00000016932	tsnax	99	63.140	Mastacembelus_armatus
ENSMUSG00000056820	Tsnax	99	63.668	ENSMZEG00005010018	tsnax	99	63.668	Maylandia_zebra
ENSMUSG00000056820	Tsnax	98	77.622	ENSMGAG00000011981	-	100	77.622	Meleagris_gallopavo
ENSMUSG00000056820	Tsnax	100	95.238	ENSMAUG00000019962	Tsnax	100	95.238	Mesocricetus_auratus
ENSMUSG00000056820	Tsnax	100	91.379	ENSMICG00000043895	-	100	91.379	Microcebus_murinus
ENSMUSG00000056820	Tsnax	100	94.138	ENSMOCG00000007651	Tsnax	100	94.138	Microtus_ochrogaster
ENSMUSG00000056820	Tsnax	93	65.233	ENSMMOG00000008821	tsnax	99	65.233	Mola_mola
ENSMUSG00000056820	Tsnax	88	83.137	ENSMODG00000008812	-	100	83.137	Monodelphis_domestica
ENSMUSG00000056820	Tsnax	91	67.547	ENSMALG00000005640	tsnax	95	67.547	Monopterus_albus
ENSMUSG00000056820	Tsnax	100	98.276	MGP_CAROLIEiJ_G0031718	Tsnax	100	98.276	Mus_caroli
ENSMUSG00000056820	Tsnax	100	97.586	MGP_PahariEiJ_G0023316	Tsnax	100	97.586	Mus_pahari
ENSMUSG00000056820	Tsnax	52	30.263	MGP_SPRETEiJ_G0015313	Tsn	72	30.263	Mus_spretus
ENSMUSG00000056820	Tsnax	100	98.966	MGP_SPRETEiJ_G0032836	Tsnax	100	98.966	Mus_spretus
ENSMUSG00000056820	Tsnax	100	91.379	ENSMPUG00000005572	-	100	91.379	Mustela_putorius_furo
ENSMUSG00000056820	Tsnax	58	89.349	ENSMLUG00000028551	-	100	89.349	Myotis_lucifugus
ENSMUSG00000056820	Tsnax	98	87.805	ENSMLUG00000015591	-	98	87.805	Myotis_lucifugus
ENSMUSG00000056820	Tsnax	100	93.793	ENSNGAG00000014498	Tsnax	100	93.793	Nannospalax_galili
ENSMUSG00000056820	Tsnax	92	65.056	ENSNBRG00000020060	tsnax	99	62.153	Neolamprologus_brichardi
ENSMUSG00000056820	Tsnax	100	90.690	ENSNLEG00000035882	TSNAX	100	90.690	Nomascus_leucogenys
ENSMUSG00000056820	Tsnax	100	77.663	ENSOPRG00000008613	-	100	77.663	Ochotona_princeps
ENSMUSG00000056820	Tsnax	99	92.814	ENSODEG00000005475	-	99	92.814	Octodon_degus
ENSMUSG00000056820	Tsnax	98	65.845	ENSODEG00000000115	-	100	65.845	Octodon_degus
ENSMUSG00000056820	Tsnax	99	63.668	ENSONIG00000010125	tsnax	99	63.668	Oreochromis_niloticus
ENSMUSG00000056820	Tsnax	98	79.720	ENSOANG00000013721	-	100	79.720	Ornithorhynchus_anatinus
ENSMUSG00000056820	Tsnax	100	91.379	ENSOCUG00000029456	-	100	91.379	Oryctolagus_cuniculus
ENSMUSG00000056820	Tsnax	100	65.411	ENSORLG00000030285	tsnax	100	65.411	Oryzias_latipes
ENSMUSG00000056820	Tsnax	100	65.068	ENSORLG00020007594	tsnax	100	65.068	Oryzias_latipes_hni
ENSMUSG00000056820	Tsnax	100	65.753	ENSORLG00015022705	tsnax	100	65.753	Oryzias_latipes_hsok
ENSMUSG00000056820	Tsnax	100	61.724	ENSOMEG00000019256	tsnax	100	61.724	Oryzias_melastigma
ENSMUSG00000056820	Tsnax	100	89.003	ENSOGAG00000005575	-	100	89.003	Otolemur_garnettii
ENSMUSG00000056820	Tsnax	100	89.310	ENSOGAG00000027793	-	100	89.310	Otolemur_garnettii
ENSMUSG00000056820	Tsnax	100	91.034	ENSOARG00000003276	-	100	91.034	Ovis_aries
ENSMUSG00000056820	Tsnax	100	90.690	ENSPPAG00000030431	TSNAX	100	90.690	Pan_paniscus
ENSMUSG00000056820	Tsnax	100	91.034	ENSPPRG00000013142	-	100	91.034	Panthera_pardus
ENSMUSG00000056820	Tsnax	77	69.231	ENSPPRG00000015159	-	99	69.231	Panthera_pardus
ENSMUSG00000056820	Tsnax	100	90.690	ENSPTIG00000014357	-	100	90.690	Panthera_tigris_altaica
ENSMUSG00000056820	Tsnax	100	90.345	ENSPTRG00000002111	TSNAX	100	90.345	Pan_troglodytes
ENSMUSG00000056820	Tsnax	100	90.000	ENSPANG00000008379	TSNAX	100	90.000	Papio_anubis
ENSMUSG00000056820	Tsnax	100	68.151	ENSPKIG00000023546	tsnax	100	68.151	Paramormyrops_kingsleyae
ENSMUSG00000056820	Tsnax	61	80.337	ENSPSIG00000005320	-	100	80.337	Pelodiscus_sinensis
ENSMUSG00000056820	Tsnax	90	67.939	ENSPMGG00000015045	tsnax	93	67.939	Periophthalmus_magnuspinnatus
ENSMUSG00000056820	Tsnax	99	63.668	ENSPFOG00000019341	tsnax	99	63.668	Poecilia_formosa
ENSMUSG00000056820	Tsnax	99	63.668	ENSPLAG00000011565	tsnax	99	63.668	Poecilia_latipinna
ENSMUSG00000056820	Tsnax	58	68.367	ENSPMEG00000023599	tsnax	73	68.367	Poecilia_mexicana
ENSMUSG00000056820	Tsnax	99	64.360	ENSPMEG00000023751	tsnax	99	64.360	Poecilia_mexicana
ENSMUSG00000056820	Tsnax	99	62.630	ENSPREG00000008389	tsnax	99	62.630	Poecilia_reticulata
ENSMUSG00000056820	Tsnax	100	90.690	ENSPPYG00000000112	TSNAX	100	90.690	Pongo_abelii
ENSMUSG00000056820	Tsnax	86	92.369	ENSPCAG00000015420	-	100	92.369	Procavia_capensis
ENSMUSG00000056820	Tsnax	100	91.034	ENSPCOG00000028517	-	100	91.034	Propithecus_coquereli
ENSMUSG00000056820	Tsnax	100	88.621	ENSPVAG00000008865	-	100	88.621	Pteropus_vampyrus
ENSMUSG00000056820	Tsnax	99	63.668	ENSPNYG00000013680	tsnax	99	63.668	Pundamilia_nyererei
ENSMUSG00000056820	Tsnax	98	64.912	ENSPNAG00000014630	tsnax	98	64.912	Pygocentrus_nattereri
ENSMUSG00000056820	Tsnax	100	95.172	ENSRNOG00000049784	Tsnax	100	95.172	Rattus_norvegicus
ENSMUSG00000056820	Tsnax	100	89.655	ENSRBIG00000040246	TSNAX	100	89.655	Rhinopithecus_bieti
ENSMUSG00000056820	Tsnax	100	89.655	ENSRROG00000044480	TSNAX	100	89.655	Rhinopithecus_roxellana
ENSMUSG00000056820	Tsnax	100	91.379	ENSSBOG00000024783	-	100	91.379	Saimiri_boliviensis_boliviensis
ENSMUSG00000056820	Tsnax	73	82.075	ENSSHAG00000006139	-	100	82.075	Sarcophilus_harrisii
ENSMUSG00000056820	Tsnax	98	67.708	ENSSFOG00015008267	tsnax	99	67.708	Scleropages_formosus
ENSMUSG00000056820	Tsnax	99	65.517	ENSSMAG00000010696	tsnax	99	65.517	Scophthalmus_maximus
ENSMUSG00000056820	Tsnax	99	65.979	ENSSDUG00000003358	tsnax	99	65.979	Seriola_dumerili
ENSMUSG00000056820	Tsnax	99	65.979	ENSSLDG00000024597	tsnax	99	65.979	Seriola_lalandi_dorsalis
ENSMUSG00000056820	Tsnax	99	88.502	ENSSARG00000011348	-	99	88.502	Sorex_araneus
ENSMUSG00000056820	Tsnax	100	79.381	ENSSPUG00000012541	-	100	79.381	Sphenodon_punctatus
ENSMUSG00000056820	Tsnax	99	63.668	ENSSPAG00000006951	tsnax	99	63.668	Stegastes_partitus
ENSMUSG00000056820	Tsnax	100	91.724	ENSSSCG00000010171	TSNAX	100	91.724	Sus_scrofa
ENSMUSG00000056820	Tsnax	99	79.310	ENSTGUG00000010090	-	99	79.310	Taeniopygia_guttata
ENSMUSG00000056820	Tsnax	89	64.259	ENSTRUG00000013041	tsnax	91	64.259	Takifugu_rubripes
ENSMUSG00000056820	Tsnax	89	65.637	ENSTNIG00000002351	tsnax	91	65.637	Tetraodon_nigroviridis
ENSMUSG00000056820	Tsnax	98	67.273	ENSTBEG00000015973	-	100	63.103	Tupaia_belangeri
ENSMUSG00000056820	Tsnax	86	91.566	ENSTTRG00000016578	-	100	91.566	Tursiops_truncatus
ENSMUSG00000056820	Tsnax	100	91.071	ENSUAMG00000013798	-	100	91.071	Ursus_americanus
ENSMUSG00000056820	Tsnax	50	89.041	ENSUAMG00000002616	-	100	89.041	Ursus_americanus
ENSMUSG00000056820	Tsnax	98	88.772	ENSUMAG00000005995	-	99	88.772	Ursus_maritimus
ENSMUSG00000056820	Tsnax	98	90.909	ENSVPAG00000003808	-	100	89.787	Vicugna_pacos
ENSMUSG00000056820	Tsnax	100	91.724	ENSVVUG00000007083	-	100	91.724	Vulpes_vulpes
ENSMUSG00000056820	Tsnax	98	61.149	ENSXETG00000026152	tsnax	99	61.149	Xenopus_tropicalis
ENSMUSG00000056820	Tsnax	99	63.668	ENSXCOG00000006896	tsnax	99	63.704	Xiphophorus_couchianus
ENSMUSG00000056820	Tsnax	99	63.322	ENSXMAG00000006738	tsnax	99	63.322	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005515	protein binding	11278549.12036294.16617164.23055941.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	11278549.12036294.	IDA	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0007275	multicellular organism development	-	IEA	Process
GO:0007283	spermatogenesis	-	IEA	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0031687	A2A adenosine receptor binding	-	ISO	Function
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0043565	sequence-specific DNA binding	-	ISO	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function