EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000057133 (Gene tree)
Gene ID: 71389
Gene Symbol: Chd6
Alias: 5430439G14Rik|6330406J24Rik
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 162098 bases
Position: chr2:160946978-161109075
Accession: 1918639
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000123240	ResIII	PF04851.15	5.4e-08	1	1
ENSMUSP00000042291	ResIII	PF04851.15	3.3e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000125179	-	5051	-	-	- (aa)	-	-
ENSMUST00000155918	-	3970	-	-	- (aa)	-	-
ENSMUST00000137831	-	616	-	-	- (aa)	-	-
ENSMUST00000149866	-	601	-	-	- (aa)	-	-
ENSMUST00000138078	-	3092	-	-	- (aa)	-	-
ENSMUST00000130265	-	675	-	ENSMUSP00000117075	217 (aa)	-	A3KFM6
ENSMUST00000155066	-	646	-	-	- (aa)	-	-
ENSMUST00000039782	-	10515	XM_006500184	ENSMUSP00000042291	2711 (aa)	XP_006500247	A3KFM7
ENSMUST00000134178	-	3608	-	ENSMUSP00000123240	1183 (aa)	-	A3KFM8
ENSMUST00000143081	-	735	-	-	- (aa)	-	-
ENSMUST00000137152	-	764	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000057133's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000057133's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000057133	Chd6	63	37.741	ENSMUSG00000023852	Chd1	87	34.635
ENSMUSG00000057133	Chd6	88	69.158	ENSMUSG00000053754	Chd8	66	57.500
ENSMUSG00000057133	Chd6	91	67.864	ENSMUSG00000056608	Chd9	96	66.667
ENSMUSG00000057133	Chd6	66	36.621	ENSMUSG00000005045	Chd5	51	34.657
ENSMUSG00000057133	Chd6	61	37.625	ENSMUSG00000078671	Chd2	63	32.583
ENSMUSG00000057133	Chd6	84	72.837	ENSMUSG00000041235	Chd7	72	64.905

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000057133	Chd6	100	94.599	ENSG00000124177	CHD6	99	96.599	Homo_sapiens
ENSMUSG00000057133	Chd6	89	80.582	ENSAPOG00000013736	chd6	64	75.802	Acanthochromis_polyacanthus
ENSMUSG00000057133	Chd6	100	94.262	ENSAMEG00000009496	CHD6	100	87.532	Ailuropoda_melanoleuca
ENSMUSG00000057133	Chd6	89	80.169	ENSATEG00000005608	chd6	68	71.930	Anabas_testudineus
ENSMUSG00000057133	Chd6	99	85.191	ENSAPLG00000015592	CHD6	100	71.570	Anas_platyrhynchos
ENSMUSG00000057133	Chd6	99	78.428	ENSACAG00000006842	CHD6	99	66.751	Anolis_carolinensis
ENSMUSG00000057133	Chd6	100	94.515	ENSANAG00000037548	CHD6	99	91.009	Aotus_nancymaae
ENSMUSG00000057133	Chd6	86	78.999	ENSAMXG00000009576	chd6	77	69.170	Astyanax_mexicanus
ENSMUSG00000057133	Chd6	100	92.827	ENSBTAG00000005733	CHD6	100	84.717	Bos_taurus
ENSMUSG00000057133	Chd6	100	94.430	ENSCJAG00000017920	CHD6	99	90.826	Callithrix_jacchus
ENSMUSG00000057133	Chd6	100	94.177	ENSCAFG00000009236	CHD6	100	87.380	Canis_familiaris
ENSMUSG00000057133	Chd6	99	94.208	ENSCAFG00020012906	CHD6	99	93.426	Canis_lupus_dingo
ENSMUSG00000057133	Chd6	100	92.743	ENSCHIG00000017606	CHD6	100	84.680	Capra_hircus
ENSMUSG00000057133	Chd6	84	87.686	ENSTSYG00000014635	CHD6	100	87.730	Carlito_syrichta
ENSMUSG00000057133	Chd6	100	94.262	ENSCPOG00000015641	CHD6	100	88.599	Cavia_porcellus
ENSMUSG00000057133	Chd6	100	94.599	ENSCCAG00000036828	CHD6	99	91.009	Cebus_capucinus
ENSMUSG00000057133	Chd6	100	94.430	ENSCATG00000039248	CHD6	99	91.009	Cercocebus_atys
ENSMUSG00000057133	Chd6	100	94.177	ENSCLAG00000013743	CHD6	100	88.294	Chinchilla_lanigera
ENSMUSG00000057133	Chd6	100	94.684	ENSCSAG00000013997	CHD6	100	88.203	Chlorocebus_sabaeus
ENSMUSG00000057133	Chd6	100	85.823	ENSCHOG00000012647	CHD6	95	87.146	Choloepus_hoffmanni
ENSMUSG00000057133	Chd6	100	85.978	ENSCPBG00000019382	CHD6	99	72.694	Chrysemys_picta_bellii
ENSMUSG00000057133	Chd6	100	94.684	ENSCANG00000043435	CHD6	99	91.009	Colobus_angolensis_palliatus
ENSMUSG00000057133	Chd6	100	97.382	ENSCGRG00001002694	Chd6	100	94.178	Cricetulus_griseus_chok1gshd
ENSMUSG00000057133	Chd6	74	96.595	ENSCGRG00000006749	-	99	96.708	Cricetulus_griseus_crigri
ENSMUSG00000057133	Chd6	99	77.425	ENSDARG00000017244	chd6	79	72.962	Danio_rerio
ENSMUSG00000057133	Chd6	99	93.872	ENSDNOG00000004176	CHD6	99	86.057	Dasypus_novemcinctus
ENSMUSG00000057133	Chd6	99	94.359	ENSEASG00005023433	CHD6	95	95.174	Equus_asinus_asinus
ENSMUSG00000057133	Chd6	99	94.336	ENSECAG00000011761	CHD6	100	87.670	Equus_caballus
ENSMUSG00000057133	Chd6	73	87.558	ENSELUG00000012309	chd6	89	79.664	Esox_lucius
ENSMUSG00000057133	Chd6	100	94.430	ENSFCAG00000003572	CHD6	100	87.422	Felis_catus
ENSMUSG00000057133	Chd6	100	84.338	ENSFALG00000012563	CHD6	99	70.072	Ficedula_albicollis
ENSMUSG00000057133	Chd6	99	94.388	ENSFDAG00000013791	CHD6	99	88.672	Fukomys_damarensis
ENSMUSG00000057133	Chd6	85	75.074	ENSGMOG00000011715	chd6	84	69.478	Gadus_morhua
ENSMUSG00000057133	Chd6	89	76.598	ENSGACG00000000037	chd6	85	69.386	Gasterosteus_aculeatus
ENSMUSG00000057133	Chd6	100	94.599	ENSGGOG00000013123	CHD6	99	91.009	Gorilla_gorilla
ENSMUSG00000057133	Chd6	92	78.565	ENSHBUG00000014701	chd6	65	72.861	Haplochromis_burtoni
ENSMUSG00000057133	Chd6	100	94.346	ENSHGLG00000004548	CHD6	100	88.824	Heterocephalus_glaber_female
ENSMUSG00000057133	Chd6	100	94.346	ENSHGLG00100006401	CHD6	100	88.824	Heterocephalus_glaber_male
ENSMUSG00000057133	Chd6	85	83.647	ENSIPUG00000003692	chd6	78	75.935	Ictalurus_punctatus
ENSMUSG00000057133	Chd6	100	94.262	ENSSTOG00000013382	CHD6	100	89.261	Ictidomys_tridecemlineatus
ENSMUSG00000057133	Chd6	99	80.488	ENSLACG00000010881	CHD6	83	76.333	Latimeria_chalumnae
ENSMUSG00000057133	Chd6	83	87.054	ENSLOCG00000007386	chd6	86	75.167	Lepisosteus_oculatus
ENSMUSG00000057133	Chd6	100	94.093	ENSLAFG00000012144	CHD6	100	87.164	Loxodonta_africana
ENSMUSG00000057133	Chd6	100	94.684	ENSMFAG00000032830	CHD6	99	91.009	Macaca_fascicularis
ENSMUSG00000057133	Chd6	100	94.684	ENSMMUG00000020458	CHD6	99	91.009	Macaca_mulatta
ENSMUSG00000057133	Chd6	100	94.684	ENSMNEG00000040847	CHD6	99	91.009	Macaca_nemestrina
ENSMUSG00000057133	Chd6	99	94.634	ENSMLEG00000031965	CHD6	99	91.009	Mandrillus_leucophaeus
ENSMUSG00000057133	Chd6	92	76.378	ENSMAMG00000013111	chd6	64	80.435	Mastacembelus_armatus
ENSMUSG00000057133	Chd6	99	85.021	ENSMGAG00000001121	CHD6	100	71.056	Meleagris_gallopavo
ENSMUSG00000057133	Chd6	99	94.804	ENSMICG00000016641	CHD6	99	91.560	Microcebus_murinus
ENSMUSG00000057133	Chd6	74	96.254	ENSMOCG00000014004	-	97	96.368	Microtus_ochrogaster
ENSMUSG00000057133	Chd6	75	95.805	ENSMODG00000000720	-	99	78.315	Monodelphis_domestica
ENSMUSG00000057133	Chd6	100	99.746	MGP_CAROLIEiJ_G0024604	Chd6	100	99.746	Mus_caroli
ENSMUSG00000057133	Chd6	100	99.493	MGP_PahariEiJ_G0026048	Chd6	100	99.493	Mus_pahari
ENSMUSG00000057133	Chd6	100	99.831	MGP_SPRETEiJ_G0025526	Chd6	100	99.831	Mus_spretus
ENSMUSG00000057133	Chd6	100	94.346	ENSMPUG00000017695	CHD6	100	86.244	Mustela_putorius_furo
ENSMUSG00000057133	Chd6	100	93.755	ENSMLUG00000016247	CHD6	100	86.797	Myotis_lucifugus
ENSMUSG00000057133	Chd6	91	77.676	ENSNBRG00000013839	chd6	80	72.513	Neolamprologus_brichardi
ENSMUSG00000057133	Chd6	100	92.165	ENSNLEG00000006496	CHD6	99	87.186	Nomascus_leucogenys
ENSMUSG00000057133	Chd6	100	90.549	ENSOPRG00000013376	-	100	83.891	Ochotona_princeps
ENSMUSG00000057133	Chd6	91	80.183	ENSONIG00000000393	chd6	84	74.494	Oreochromis_niloticus
ENSMUSG00000057133	Chd6	99	86.192	ENSOANG00000014347	CHD6	99	68.807	Ornithorhynchus_anatinus
ENSMUSG00000057133	Chd6	99	94.336	ENSOCUG00000012394	CHD6	100	85.830	Oryctolagus_cuniculus
ENSMUSG00000057133	Chd6	85	82.905	ENSORLG00020021891	chd6	95	85.571	Oryzias_latipes_hni
ENSMUSG00000057133	Chd6	99	94.092	ENSOGAG00000002427	CHD6	100	86.718	Otolemur_garnettii
ENSMUSG00000057133	Chd6	99	92.223	ENSOARG00000002597	CHD6	100	82.537	Ovis_aries
ENSMUSG00000057133	Chd6	100	94.430	ENSPPRG00000014756	CHD6	100	87.459	Panthera_pardus
ENSMUSG00000057133	Chd6	100	94.430	ENSPTIG00000011094	CHD6	100	87.348	Panthera_tigris_altaica
ENSMUSG00000057133	Chd6	100	94.599	ENSPTRG00000013504	CHD6	99	91.009	Pan_troglodytes
ENSMUSG00000057133	Chd6	100	94.768	ENSPANG00000025554	CHD6	99	91.193	Papio_anubis
ENSMUSG00000057133	Chd6	89	80.664	ENSPKIG00000005578	chd6	79	72.589	Paramormyrops_kingsleyae
ENSMUSG00000057133	Chd6	80	84.696	ENSPMGG00000014877	chd6	84	74.777	Periophthalmus_magnuspinnatus
ENSMUSG00000057133	Chd6	74	96.233	ENSPEMG00000014672	-	99	92.844	Peromyscus_maniculatus_bairdii
ENSMUSG00000057133	Chd6	100	88.627	ENSPCIG00000028037	CHD6	100	77.505	Phascolarctos_cinereus
ENSMUSG00000057133	Chd6	92	78.442	ENSPLAG00000003128	chd6	67	73.459	Poecilia_latipinna
ENSMUSG00000057133	Chd6	86	82.843	ENSPREG00000022653	chd6	99	85.714	Poecilia_reticulata
ENSMUSG00000057133	Chd6	100	94.515	ENSPPYG00000011016	CHD6	100	88.207	Pongo_abelii
ENSMUSG00000057133	Chd6	100	94.768	ENSPCOG00000001089	CHD6	99	91.009	Propithecus_coquereli
ENSMUSG00000057133	Chd6	91	79.908	ENSPNYG00000022516	chd6	80	73.711	Pundamilia_nyererei
ENSMUSG00000057133	Chd6	82	83.113	ENSPNAG00000012825	chd6	79	70.397	Pygocentrus_nattereri
ENSMUSG00000057133	Chd6	100	98.226	ENSRNOG00000016744	Chd6	100	95.684	Rattus_norvegicus
ENSMUSG00000057133	Chd6	100	94.515	ENSSBOG00000022089	CHD6	99	91.009	Saimiri_boliviensis_boliviensis
ENSMUSG00000057133	Chd6	100	88.364	ENSSHAG00000017072	CHD6	100	77.219	Sarcophilus_harrisii
ENSMUSG00000057133	Chd6	91	81.953	ENSSFOG00015012920	chd6	81	72.242	Scleropages_formosus
ENSMUSG00000057133	Chd6	72	98.684	ENSSARG00000002615	-	61	98.684	Sorex_araneus
ENSMUSG00000057133	Chd6	100	93.418	ENSSSCG00000007360	CHD6	100	87.570	Sus_scrofa
ENSMUSG00000057133	Chd6	93	88.688	ENSTGUG00000003179	CHD6	100	72.428	Taeniopygia_guttata
ENSMUSG00000057133	Chd6	80	85.189	ENSTNIG00000017487	chd6	100	56.827	Tetraodon_nigroviridis
ENSMUSG00000057133	Chd6	100	92.827	ENSTTRG00000013438	CHD6	100	83.688	Tursiops_truncatus
ENSMUSG00000057133	Chd6	99	94.293	ENSUAMG00000024036	CHD6	95	93.629	Ursus_americanus
ENSMUSG00000057133	Chd6	99	94.288	ENSUMAG00000002017	CHD6	95	93.629	Ursus_maritimus
ENSMUSG00000057133	Chd6	95	89.343	ENSVPAG00000007941	CHD6	95	87.132	Vicugna_pacos
ENSMUSG00000057133	Chd6	100	94.177	ENSVVUG00000029164	CHD6	100	87.312	Vulpes_vulpes
ENSMUSG00000057133	Chd6	100	71.741	ENSXETG00000021445	chd6	100	60.634	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001221	transcription cofactor binding	-	ISO	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0008094	DNA-dependent ATPase activity	-	ISO	Function
GO:0016787	hydrolase activity	-	IEA	Function
GO:0016817	hydrolase activity, acting on acid anhydrides	-	IEA	Function
GO:0036091	positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress	-	ISO	Process