EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000057637 (Gene tree)
Gene ID: 110593
Gene Symbol: Prdm2
Alias: 4833427P12Rik|E330024L24Rik|KMT8|LOC381568|Riz|Riz1
Full Name: PR domain containing 2%2C with ZNF domain
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 105605
Position: chr4: 143107391-143212995
Accession: 107628
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000105778	-	7304	XM_006538485	ENSMUSP00000101404	1709 (aa)	XP_006538548	A2A7B5
ENSMUST00000134791	-	617	-	ENSMUSP00000116458	152 (aa)	-	Q8C2W5
ENSMUST00000156909	-	347	-	-	- (aa)	-	-
ENSMUST00000154280	-	574	XM_011250175	ENSMUSP00000117741	169 (aa)	XP_011248477	A2A7B7

Gene Model

Click here to download ENSMUSG00000057637's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000057637's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	21873635.	IBA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	11544182.	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0008340	determination of adult lifespan	11544182.	IMP	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0032355	response to estradiol	-	ISO	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process