EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000057666 (Gene tree)
Gene ID: 14433
Gene Symbol: Gapdh
Alias: Gapd
Full Name: glyceraldehyde-3-phosphate dehydrogenase
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 4753
Position: chr6: 125161715-125166467
Accession: 95640
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000182464	-	471	-	-	- (aa)	-	-
ENSMUST00000182670	-	358	-	-	- (aa)	-	-
ENSMUST00000147954	-	565	-	-	- (aa)	-	-
ENSMUST00000182115	-	483	-	-	- (aa)	-	-
ENSMUST00000144588	-	769	-	-	- (aa)	-	-
ENSMUST00000182052	-	471	-	ENSMUSP00000138403	55 (aa)	-	S4R1W8
ENSMUST00000182277	-	482	-	ENSMUSP00000138295	57 (aa)	-	S4R1N5
ENSMUST00000073605	-	1272	-	ENSMUSP00000073289	333 (aa)	XP_001476757	P16858
ENSMUST00000144205	-	560	-	-	- (aa)	-	-
ENSMUST00000183272	-	884	-	ENSMUSP00000138508	280 (aa)	-	S4R257
ENSMUST00000117757	-	1273	-	ENSMUSP00000113942	359 (aa)	-	A0A0A0MQF6
ENSMUST00000118875	-	1420	XM_017321385	ENSMUSP00000113213	333 (aa)	XP_001476757	P16858
ENSMUST00000192506	-	3289	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000057666's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu00010	Glycolysis / Gluconeogenesis	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01200	Carbon metabolism	KEGG
mmu01230	Biosynthesis of amino acids	KEGG
mmu04066	HIF-1 signaling pathway	KEGG
mmu05010	Alzheimer disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000057666's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000057666	Gapdh	100	76.923	WBGene00001684	gpd-2	98	75.821	Caenorhabditis_elegans
ENSMUSG00000057666	Gapdh	100	77.273	WBGene00001683	gpd-1	98	75.224	Caenorhabditis_elegans
ENSMUSG00000057666	Gapdh	100	76.573	WBGene00001686	gpd-4	98	74.627	Caenorhabditis_elegans
ENSMUSG00000057666	Gapdh	100	93.929	ENSG00000111640	GAPDH	100	94.539	Homo_sapiens
ENSMUSG00000057666	Gapdh	100	67.857	YGR192C	TDH3	99	66.364	Saccharomyces_cerevisiae
ENSMUSG00000057666	Gapdh	100	68.214	YJL052W	TDH1	99	65.455	Saccharomyces_cerevisiae
ENSMUSG00000057666	Gapdh	100	67.143	YJR009C	TDH2	99	65.758	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	-	ISO	Process
GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	21873635.	IBA	Function
GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	19903941.	IDA	Function
GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	3796661.15665293.	IMP	Function
GO:0004365	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	-	ISO	Function
GO:0005515	protein binding	19423573.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	15159393.17962088.19075228.19470756.21539824.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	14651853.	HDA	Component
GO:0005811	lipid droplet	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	21413931.23530063.24137001.	IDA	Component
GO:0005829	cytosol	24101517.	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005975	carbohydrate metabolic process	-	ISO	Process
GO:0006094	gluconeogenesis	-	ISO	Process
GO:0006096	glycolytic process	21873635.	IBA	Process
GO:0006096	glycolytic process	-	ISO	Process
GO:0006915	apoptotic process	-	ISO	Process
GO:0007275	multicellular organism development	3796661.	IMP	Process
GO:0008017	microtubule binding	-	ISO	Function
GO:0010951	negative regulation of endopeptidase activity	-	ISO	Process
GO:0015630	microtubule cytoskeleton	-	ISO	Component
GO:0017148	negative regulation of translation	23071094.	IDA	Process
GO:0017148	negative regulation of translation	-	ISO	Process
GO:0019828	aspartic-type endopeptidase inhibitor activity	-	ISO	Function
GO:0019899	enzyme binding	19903941.	IPI	Function
GO:0019933	cAMP-mediated signaling	-	ISO	Process
GO:0031640	killing of cells of other organism	-	ISO	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0035605	peptidyl-cysteine S-nitrosylase activity	-	ISO	Function
GO:0035606	peptidyl-cysteine S-trans-nitrosylation	-	ISO	Process
GO:0042802	identical protein binding	-	ISO	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0050715	positive regulation of cytokine secretion	-	ISO	Process
GO:0050821	protein stabilization	-	ISO	Process
GO:0050832	defense response to fungus	-	ISO	Process
GO:0051289	protein homotetramerization	-	ISO	Process
GO:0051402	neuron apoptotic process	-	ISO	Process
GO:0051873	killing by host of symbiont cells	-	ISO	Process
GO:0052501	positive regulation by organism of apoptotic process in other organism involved in symbiotic interaction	-	ISO	Process
GO:0060359	response to ammonium ion	-	ISO	Process
GO:0061844	antimicrobial humoral immune response mediated by antimicrobial peptide	-	ISO	Process
GO:0071346	cellular response to interferon-gamma	-	ISO	Process
GO:0097452	GAIT complex	23071094.	IDA	Component
GO:0097452	GAIT complex	-	ISO	Component
GO:0097718	disordered domain specific binding	-	ISO	Function
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099092	postsynaptic density, intracellular component	-	ISO	Component
GO:1905460	negative regulation of vascular associated smooth muscle cell apoptotic process	-	ISO	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component