EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000201758	-	719	-	-	- (aa)	-	-
ENSMUST00000124494	-	457	-	-	- (aa)	-	-
ENSMUST00000143918	-	3735	-	-	- (aa)	-	-
ENSMUST00000046257	-	7820	XM_006497816	ENSMUSP00000047792	2452 (aa)	XP_006497879	P16546
ENSMUST00000202844	-	477	-	-	- (aa)	-	-
ENSMUST00000100225	-	7892	XM_006497813	ENSMUSP00000097797	2477 (aa)	XP_006497876	A3KGU7
ENSMUST00000152453	-	814	-	-	- (aa)	-	-
ENSMUST00000113719	-	8018	XM_006497812	ENSMUSP00000109348	2478 (aa)	XP_006497875	E9Q447
ENSMUST00000113741	-	781	-	ENSMUSP00000109370	219 (aa)	-	A3KGU4
ENSMUST00000149846	-	800	-	-	- (aa)	-	-
ENSMUST00000149038	-	1025	-	-	- (aa)	-	-
ENSMUST00000202286	-	1471	-	-	- (aa)	-	-
ENSMUST00000131827	-	570	-	-	- (aa)	-	-
ENSMUST00000129241	-	7585	XM_006497809	ENSMUSP00000121116	2498 (aa)	XP_006497872	A3KGU9
ENSMUST00000095083	-	7883	XM_006497814	ENSMUSP00000092697	2472 (aa)	XP_006497877	P16546
ENSMUST00000113717	-	7958	XM_006497815	ENSMUSP00000109346	2457 (aa)	XP_006497878	A3KGU5

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04210	Apoptosis	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000057738	Sptan1	100	98.426	ENSG00000197694	SPTAN1	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003779	actin binding	-	IEA	Function
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005515	protein binding	23746204.	IPI	Function
GO:0005516	calmodulin binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005916	fascia adherens	16481394.	IDA	Component
GO:0015630	microtubule cytoskeleton	-	ISO	Component
GO:0016020	membrane	18723693.	IDA	Component
GO:0016328	lateral plasma membrane	18796539.	IDA	Component
GO:0019905	syntaxin binding	-	ISO	Function
GO:0030018	Z disc	15247274.	IDA	Component
GO:0030507	spectrin binding	18796539.	IDA	Function
GO:0030507	spectrin binding	18796539.	IPI	Function
GO:0030507	spectrin binding	23704327.	ISO	Function
GO:0030863	cortical cytoskeleton	18723693.	IDA	Component
GO:0031532	actin cytoskeleton reorganization	-	ISO	Process
GO:0032437	cuticular plate	18796539.	IDA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0033270	paranode region of axon	16551741.	IDA	Component
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0046982	protein heterodimerization activity	18796539.	IDA	Function
GO:0051693	actin filament capping	-	IEA	Process