EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000058301 (Gene tree)
Gene ID: 19704
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1 regulator of nonsense transcripts homolog (yeast)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 21754 bases
Position: chr8:70331525-70353278
Accession: 107995
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000148927	UPF1_Zn_bind	PF09416.10	1.4e-74	1	1
ENSMUSP00000075089	UPF1_Zn_bind	PF09416.10	1.5e-74	1	1
ENSMUSP00000148927	ResIII	PF04851.15	5.6e-05	1	1
ENSMUSP00000075089	ResIII	PF04851.15	6e-05	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000075666	-	4618	XM_006509604	ENSMUSP00000075089	1124 (aa)	XP_006509667	Q9EPU0
ENSMUST00000215817	-	4518	-	ENSMUSP00000148927	1113 (aa)	-	Q9EPU0

Gene Model

Click here to download ENSMUSG00000058301's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000058301's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000058301	Upf1	100	98.494	ENSG00000005007	UPF1	100	98.494	Homo_sapiens
ENSMUSG00000058301	Upf1	100	92.384	ENSAPOG00000010916	-	100	92.384	Acanthochromis_polyacanthus
ENSMUSG00000058301	Upf1	100	91.332	ENSAPOG00000023773	upf1	100	91.510	Acanthochromis_polyacanthus
ENSMUSG00000058301	Upf1	100	97.961	ENSAMEG00000011474	UPF1	100	97.961	Ailuropoda_melanoleuca
ENSMUSG00000058301	Upf1	92	94.244	ENSACIG00000010985	-	100	94.341	Amphilophus_citrinellus
ENSMUSG00000058301	Upf1	100	91.071	ENSACIG00000019949	upf1	100	91.510	Amphilophus_citrinellus
ENSMUSG00000058301	Upf1	100	90.844	ENSAOCG00000018519	upf1	100	91.327	Amphiprion_ocellaris
ENSMUSG00000058301	Upf1	100	92.384	ENSAOCG00000006352	-	100	92.384	Amphiprion_ocellaris
ENSMUSG00000058301	Upf1	100	90.844	ENSAPEG00000016344	upf1	100	91.327	Amphiprion_percula
ENSMUSG00000058301	Upf1	100	92.384	ENSAPEG00000006292	-	100	92.384	Amphiprion_percula
ENSMUSG00000058301	Upf1	100	92.473	ENSATEG00000016606	-	100	92.473	Anabas_testudineus
ENSMUSG00000058301	Upf1	100	90.018	ENSATEG00000017867	upf1	100	90.724	Anabas_testudineus
ENSMUSG00000058301	Upf1	94	97.526	ENSAPLG00000009175	UPF1	99	97.526	Anas_platyrhynchos
ENSMUSG00000058301	Upf1	96	95.841	ENSANAG00000024107	UPF1	98	95.841	Aotus_nancymaae
ENSMUSG00000058301	Upf1	100	92.115	ENSACLG00000022630	-	100	92.025	Astatotilapia_calliptera
ENSMUSG00000058301	Upf1	100	90.804	ENSACLG00000007181	upf1	100	91.242	Astatotilapia_calliptera
ENSMUSG00000058301	Upf1	100	92.748	ENSAMXG00000042187	upf1	100	93.196	Astyanax_mexicanus
ENSMUSG00000058301	Upf1	100	98.580	ENSBTAG00000020922	UPF1	100	98.580	Bos_taurus
ENSMUSG00000058301	Upf1	89	50.988	WBGene00004880	smg-2	99	48.245	Caenorhabditis_elegans
ENSMUSG00000058301	Upf1	100	98.494	ENSCJAG00000019627	UPF1	100	98.494	Callithrix_jacchus
ENSMUSG00000058301	Upf1	100	98.496	ENSCAFG00000014578	UPF1	100	98.496	Canis_familiaris
ENSMUSG00000058301	Upf1	100	98.481	ENSCAFG00020012347	UPF1	100	98.481	Canis_lupus_dingo
ENSMUSG00000058301	Upf1	100	98.566	ENSCHIG00000011018	UPF1	100	98.566	Capra_hircus
ENSMUSG00000058301	Upf1	96	97.398	ENSTSYG00000008877	UPF1	99	97.398	Carlito_syrichta
ENSMUSG00000058301	Upf1	94	98.004	ENSCAPG00000005758	UPF1	95	98.004	Cavia_aperea
ENSMUSG00000058301	Upf1	100	96.181	ENSCPOG00000025463	UPF1	100	96.181	Cavia_porcellus
ENSMUSG00000058301	Upf1	100	98.665	ENSCCAG00000032175	UPF1	100	98.665	Cebus_capucinus
ENSMUSG00000058301	Upf1	95	97.657	ENSCATG00000040306	UPF1	98	97.657	Cercocebus_atys
ENSMUSG00000058301	Upf1	96	97.870	ENSCLAG00000004037	UPF1	100	99.049	Chinchilla_lanigera
ENSMUSG00000058301	Upf1	100	98.390	ENSCSAG00000005276	UPF1	100	98.390	Chlorocebus_sabaeus
ENSMUSG00000058301	Upf1	100	96.509	ENSCPBG00000012513	UPF1	100	96.509	Chrysemys_picta_bellii
ENSMUSG00000058301	Upf1	78	77.702	ENSCING00000021399	-	99	78.687	Ciona_intestinalis
ENSMUSG00000058301	Upf1	99	72.202	ENSCSAVG00000006533	-	99	72.202	Ciona_savignyi
ENSMUSG00000058301	Upf1	95	98.131	ENSCANG00000029819	UPF1	99	98.131	Colobus_angolensis_palliatus
ENSMUSG00000058301	Upf1	100	99.820	ENSCGRG00001021067	Upf1	100	99.820	Cricetulus_griseus_chok1gshd
ENSMUSG00000058301	Upf1	95	98.784	ENSCGRG00000013480	Upf1	99	98.784	Cricetulus_griseus_crigri
ENSMUSG00000058301	Upf1	100	92.377	ENSCSEG00000016159	-	100	92.287	Cynoglossus_semilaevis
ENSMUSG00000058301	Upf1	100	86.380	ENSCSEG00000017239	upf1	100	86.470	Cynoglossus_semilaevis
ENSMUSG00000058301	Upf1	100	92.025	ENSCVAG00000010561	upf1	100	91.935	Cyprinodon_variegatus
ENSMUSG00000058301	Upf1	100	92.569	ENSDARG00000016302	upf1	100	93.017	Danio_rerio
ENSMUSG00000058301	Upf1	95	95.607	ENSDORG00000009984	Upf1	96	95.607	Dipodomys_ordii
ENSMUSG00000058301	Upf1	85	70.894	FBgn0030354	Upf1	99	61.379	Drosophila_melanogaster
ENSMUSG00000058301	Upf1	55	86.601	ENSEBUG00000010069	upf1	96	86.438	Eptatretus_burgeri
ENSMUSG00000058301	Upf1	100	98.746	ENSEASG00005006549	UPF1	100	98.746	Equus_asinus_asinus
ENSMUSG00000058301	Upf1	100	98.746	ENSECAG00000010639	UPF1	100	98.746	Equus_caballus
ENSMUSG00000058301	Upf1	100	90.285	ENSELUG00000020917	upf1	100	90.553	Esox_lucius
ENSMUSG00000058301	Upf1	100	91.006	ENSELUG00000012916	-	100	91.459	Esox_lucius
ENSMUSG00000058301	Upf1	100	98.407	ENSFCAG00000009757	UPF1	100	98.407	Felis_catus
ENSMUSG00000058301	Upf1	96	96.276	ENSFALG00000009312	UPF1	99	96.276	Ficedula_albicollis
ENSMUSG00000058301	Upf1	97	96.875	ENSFDAG00000014816	UPF1	100	98.954	Fukomys_damarensis
ENSMUSG00000058301	Upf1	85	94.975	ENSFHEG00000016276	-	96	94.975	Fundulus_heteroclitus
ENSMUSG00000058301	Upf1	100	88.622	ENSFHEG00000006428	upf1	100	88.622	Fundulus_heteroclitus
ENSMUSG00000058301	Upf1	100	91.038	ENSGMOG00000007541	upf1	100	91.837	Gadus_morhua
ENSMUSG00000058301	Upf1	100	97.048	ENSGALG00000003220	UPF1	100	97.048	Gallus_gallus
ENSMUSG00000058301	Upf1	100	91.480	ENSGAFG00000004831	upf1	100	91.839	Gambusia_affinis
ENSMUSG00000058301	Upf1	62	94.957	ENSGAFG00000015443	-	85	94.957	Gambusia_affinis
ENSMUSG00000058301	Upf1	100	97.038	ENSGAGG00000022217	UPF1	100	97.038	Gopherus_agassizii
ENSMUSG00000058301	Upf1	94	98.944	ENSGGOG00000002608	UPF1	99	98.944	Gorilla_gorilla
ENSMUSG00000058301	Upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMUSG00000058301	Upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSMUSG00000058301	Upf1	100	98.140	ENSHGLG00000010900	UPF1	100	98.140	Heterocephalus_glaber_female
ENSMUSG00000058301	Upf1	96	95.032	ENSHGLG00100005904	UPF1	99	95.032	Heterocephalus_glaber_male
ENSMUSG00000058301	Upf1	100	91.480	ENSHCOG00000008918	upf1	100	93.327	Hippocampus_comes
ENSMUSG00000058301	Upf1	100	93.196	ENSIPUG00000005108	UPF1	100	93.554	Ictalurus_punctatus
ENSMUSG00000058301	Upf1	100	98.843	ENSSTOG00000009196	UPF1	100	98.843	Ictidomys_tridecemlineatus
ENSMUSG00000058301	Upf1	100	99.288	ENSJJAG00000023151	Upf1	100	99.288	Jaculus_jaculus
ENSMUSG00000058301	Upf1	100	92.384	ENSKMAG00000004962	upf1	100	92.294	Kryptolebias_marmoratus
ENSMUSG00000058301	Upf1	100	89.381	ENSLBEG00000014862	upf1	100	90.442	Labrus_bergylta
ENSMUSG00000058301	Upf1	100	92.122	ENSLBEG00000027848	-	100	92.122	Labrus_bergylta
ENSMUSG00000058301	Upf1	63	96.270	ENSLACG00000008482	UPF1	100	96.270	Latimeria_chalumnae
ENSMUSG00000058301	Upf1	100	94.709	ENSLOCG00000002072	upf1	100	94.709	Lepisosteus_oculatus
ENSMUSG00000058301	Upf1	100	98.053	ENSLAFG00000014963	UPF1	100	98.053	Loxodonta_africana
ENSMUSG00000058301	Upf1	100	98.665	ENSMFAG00000037748	UPF1	100	98.665	Macaca_fascicularis
ENSMUSG00000058301	Upf1	100	98.843	ENSMMUG00000023286	UPF1	100	98.843	Macaca_mulatta
ENSMUSG00000058301	Upf1	100	98.665	ENSMNEG00000000046	UPF1	100	98.665	Macaca_nemestrina
ENSMUSG00000058301	Upf1	94	98.954	ENSMLEG00000028404	UPF1	100	98.954	Mandrillus_leucophaeus
ENSMUSG00000058301	Upf1	100	91.495	ENSMAMG00000006231	-	100	91.943	Mastacembelus_armatus
ENSMUSG00000058301	Upf1	100	89.753	ENSMAMG00000006229	upf1	100	90.724	Mastacembelus_armatus
ENSMUSG00000058301	Upf1	100	89.850	ENSMZEG00005003489	upf1	100	90.949	Maylandia_zebra
ENSMUSG00000058301	Upf1	100	92.115	ENSMZEG00005016386	-	100	92.025	Maylandia_zebra
ENSMUSG00000058301	Upf1	94	97.053	ENSMGAG00000004745	UPF1	100	97.053	Meleagris_gallopavo
ENSMUSG00000058301	Upf1	95	98.145	ENSMAUG00000011398	Upf1	97	98.145	Mesocricetus_auratus
ENSMUSG00000058301	Upf1	100	98.390	ENSMICG00000001659	UPF1	100	98.390	Microcebus_murinus
ENSMUSG00000058301	Upf1	100	99.644	ENSMOCG00000005699	Upf1	100	99.644	Microtus_ochrogaster
ENSMUSG00000058301	Upf1	100	90.575	ENSMMOG00000007881	upf1	100	90.942	Mola_mola
ENSMUSG00000058301	Upf1	94	91.168	ENSMMOG00000007537	-	99	92.226	Mola_mola
ENSMUSG00000058301	Upf1	100	97.264	ENSMODG00000003689	UPF1	100	97.264	Monodelphis_domestica
ENSMUSG00000058301	Upf1	100	91.169	ENSMALG00000018100	-	100	91.169	Monopterus_albus
ENSMUSG00000058301	Upf1	100	90.844	ENSMALG00000000144	upf1	100	91.023	Monopterus_albus
ENSMUSG00000058301	Upf1	100	100.000	MGP_CAROLIEiJ_G0031142	Upf1	100	100.000	Mus_caroli
ENSMUSG00000058301	Upf1	100	100.000	MGP_PahariEiJ_G0021607	Upf1	100	100.000	Mus_pahari
ENSMUSG00000058301	Upf1	100	100.000	MGP_SPRETEiJ_G0032260	Upf1	100	100.000	Mus_spretus
ENSMUSG00000058301	Upf1	100	98.481	ENSMPUG00000015516	UPF1	100	98.481	Mustela_putorius_furo
ENSMUSG00000058301	Upf1	99	98.117	ENSMLUG00000012122	UPF1	99	98.117	Myotis_lucifugus
ENSMUSG00000058301	Upf1	100	99.201	ENSNGAG00000024107	Upf1	100	99.201	Nannospalax_galili
ENSMUSG00000058301	Upf1	100	89.107	ENSNBRG00000000670	upf1	100	89.544	Neolamprologus_brichardi
ENSMUSG00000058301	Upf1	100	89.110	ENSNBRG00000022069	-	100	93.197	Neolamprologus_brichardi
ENSMUSG00000058301	Upf1	94	93.156	ENSNLEG00000006062	UPF1	100	93.156	Nomascus_leucogenys
ENSMUSG00000058301	Upf1	83	93.137	ENSMEUG00000014146	-	83	93.137	Notamacropus_eugenii
ENSMUSG00000058301	Upf1	89	98.785	ENSOPRG00000014018	UPF1	100	91.162	Ochotona_princeps
ENSMUSG00000058301	Upf1	100	97.598	ENSODEG00000012426	UPF1	100	97.598	Octodon_degus
ENSMUSG00000058301	Upf1	100	92.204	ENSONIG00000012729	-	100	92.115	Oreochromis_niloticus
ENSMUSG00000058301	Upf1	100	90.115	ENSONIG00000010452	upf1	100	91.216	Oreochromis_niloticus
ENSMUSG00000058301	Upf1	100	97.163	ENSOANG00000004568	UPF1	100	97.163	Ornithorhynchus_anatinus
ENSMUSG00000058301	Upf1	100	92.294	ENSORLG00000008453	upf1	100	92.294	Oryzias_latipes
ENSMUSG00000058301	Upf1	100	92.122	ENSORLG00020014758	upf1	100	92.122	Oryzias_latipes_hni
ENSMUSG00000058301	Upf1	100	92.122	ENSORLG00015010165	upf1	100	92.122	Oryzias_latipes_hsok
ENSMUSG00000058301	Upf1	100	92.384	ENSOMEG00000003665	upf1	100	92.294	Oryzias_melastigma
ENSMUSG00000058301	Upf1	100	98.569	ENSOGAG00000012866	UPF1	100	98.569	Otolemur_garnettii
ENSMUSG00000058301	Upf1	96	96.593	ENSOARG00000010739	UPF1	100	96.593	Ovis_aries
ENSMUSG00000058301	Upf1	95	98.131	ENSPPAG00000043884	UPF1	97	98.131	Pan_paniscus
ENSMUSG00000058301	Upf1	100	98.407	ENSPPRG00000023470	UPF1	100	98.407	Panthera_pardus
ENSMUSG00000058301	Upf1	93	97.115	ENSPTIG00000010159	UPF1	99	97.115	Panthera_tigris_altaica
ENSMUSG00000058301	Upf1	100	98.665	ENSPTRG00000010721	UPF1	100	98.665	Pan_troglodytes
ENSMUSG00000058301	Upf1	100	98.665	ENSPANG00000008847	UPF1	100	98.665	Papio_anubis
ENSMUSG00000058301	Upf1	91	94.706	ENSPKIG00000006069	upf1	97	94.608	Paramormyrops_kingsleyae
ENSMUSG00000058301	Upf1	69	97.124	ENSPSIG00000009491	UPF1	100	97.124	Pelodiscus_sinensis
ENSMUSG00000058301	Upf1	100	89.187	ENSPMGG00000017327	upf1	100	89.295	Periophthalmus_magnuspinnatus
ENSMUSG00000058301	Upf1	100	99.822	ENSPEMG00000001085	Upf1	100	99.822	Peromyscus_maniculatus_bairdii
ENSMUSG00000058301	Upf1	100	87.299	ENSPMAG00000001206	upf1	100	86.732	Petromyzon_marinus
ENSMUSG00000058301	Upf1	100	97.853	ENSPCIG00000006156	UPF1	100	97.853	Phascolarctos_cinereus
ENSMUSG00000058301	Upf1	100	89.333	ENSPLAG00000018155	-	100	89.244	Poecilia_latipinna
ENSMUSG00000058301	Upf1	100	91.570	ENSPLAG00000016232	-	100	91.928	Poecilia_latipinna
ENSMUSG00000058301	Upf1	100	91.487	ENSPMEG00000016319	-	100	91.846	Poecilia_mexicana
ENSMUSG00000058301	Upf1	100	89.803	ENSPMEG00000011443	-	100	89.714	Poecilia_mexicana
ENSMUSG00000058301	Upf1	100	91.390	ENSPREG00000011247	-	100	91.749	Poecilia_reticulata
ENSMUSG00000058301	Upf1	100	89.628	ENSPREG00000009940	upf1	100	89.628	Poecilia_reticulata
ENSMUSG00000058301	Upf1	100	93.534	ENSPPYG00000009752	UPF1	100	93.534	Pongo_abelii
ENSMUSG00000058301	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSMUSG00000058301	Upf1	100	98.843	ENSPCOG00000023813	UPF1	100	98.843	Propithecus_coquereli
ENSMUSG00000058301	Upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMUSG00000058301	Upf1	100	92.115	ENSPNYG00000016731	-	100	92.025	Pundamilia_nyererei
ENSMUSG00000058301	Upf1	100	89.850	ENSPNYG00000003694	upf1	100	90.949	Pundamilia_nyererei
ENSMUSG00000058301	Upf1	100	92.748	ENSPNAG00000025614	upf1	100	93.196	Pygocentrus_nattereri
ENSMUSG00000058301	Upf1	100	99.911	ENSRNOG00000020134	Upf1	100	99.911	Rattus_norvegicus
ENSMUSG00000058301	Upf1	95	95.794	ENSRBIG00000013894	UPF1	98	98.686	Rhinopithecus_bieti
ENSMUSG00000058301	Upf1	95	98.131	ENSRROG00000040935	UPF1	99	98.131	Rhinopithecus_roxellana
ENSMUSG00000058301	Upf1	76	55.962	YMR080C	NAM7	86	55.962	Saccharomyces_cerevisiae
ENSMUSG00000058301	Upf1	96	97.220	ENSSBOG00000023632	UPF1	99	97.220	Saimiri_boliviensis_boliviensis
ENSMUSG00000058301	Upf1	94	98.196	ENSSHAG00000010499	UPF1	100	98.196	Sarcophilus_harrisii
ENSMUSG00000058301	Upf1	100	94.803	ENSSFOG00015021095	upf1	99	96.734	Scleropages_formosus
ENSMUSG00000058301	Upf1	100	92.211	ENSSMAG00000021018	-	100	92.211	Scophthalmus_maximus
ENSMUSG00000058301	Upf1	100	89.027	ENSSMAG00000005055	upf1	100	89.744	Scophthalmus_maximus
ENSMUSG00000058301	Upf1	100	92.480	ENSSDUG00000009629	-	100	92.480	Seriola_dumerili
ENSMUSG00000058301	Upf1	100	90.018	ENSSDUG00000013320	upf1	100	90.813	Seriola_dumerili
ENSMUSG00000058301	Upf1	100	92.480	ENSSLDG00000006878	-	100	92.480	Seriola_lalandi_dorsalis
ENSMUSG00000058301	Upf1	100	90.820	ENSSLDG00000020868	upf1	100	91.103	Seriola_lalandi_dorsalis
ENSMUSG00000058301	Upf1	100	96.858	ENSSPUG00000010538	UPF1	100	96.858	Sphenodon_punctatus
ENSMUSG00000058301	Upf1	100	89.238	ENSSPAG00000000003	upf1	100	89.276	Stegastes_partitus
ENSMUSG00000058301	Upf1	100	92.466	ENSSPAG00000011521	-	100	92.377	Stegastes_partitus
ENSMUSG00000058301	Upf1	100	98.492	ENSSSCG00000039301	UPF1	100	98.492	Sus_scrofa
ENSMUSG00000058301	Upf1	83	89.468	ENSTGUG00000001057	UPF1	100	95.273	Taeniopygia_guttata
ENSMUSG00000058301	Upf1	100	90.868	ENSTRUG00000005131	-	100	91.390	Takifugu_rubripes
ENSMUSG00000058301	Upf1	100	90.575	ENSTRUG00000000150	upf1	100	90.575	Takifugu_rubripes
ENSMUSG00000058301	Upf1	100	94.444	ENSTTRG00000011544	UPF1	100	94.265	Tursiops_truncatus
ENSMUSG00000058301	Upf1	100	98.391	ENSUAMG00000007093	UPF1	100	98.391	Ursus_americanus
ENSMUSG00000058301	Upf1	95	98.129	ENSUMAG00000006652	UPF1	99	99.066	Ursus_maritimus
ENSMUSG00000058301	Upf1	100	98.481	ENSVVUG00000007797	UPF1	100	98.481	Vulpes_vulpes
ENSMUSG00000058301	Upf1	100	81.938	ENSXETG00000013602	upf1	100	81.850	Xenopus_tropicalis
ENSMUSG00000058301	Upf1	93	93.598	ENSXCOG00000005764	-	100	94.083	Xiphophorus_couchianus
ENSMUSG00000058301	Upf1	97	89.508	ENSXCOG00000015275	-	96	89.415	Xiphophorus_couchianus
ENSMUSG00000058301	Upf1	100	89.767	ENSXMAG00000001703	-	100	89.677	Xiphophorus_maculatus
ENSMUSG00000058301	Upf1	100	91.308	ENSXMAG00000002540	-	100	91.667	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0000294	nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay	-	ISO	Process
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0000785	chromatin	-	ISO	Component
GO:0000956	nuclear-transcribed mRNA catabolic process	-	ISO	Process
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005515	protein binding	23202588.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006260	DNA replication	-	ISO	Process
GO:0006281	DNA repair	-	ISO	Process
GO:0006449	regulation of translational termination	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0009048	dosage compensation by inactivation of X chromosome	16789828.	IMP	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0032201	telomere maintenance via semi-conservative replication	-	ISO	Process
GO:0032204	regulation of telomere maintenance	-	ISO	Process
GO:0035145	exon-exon junction complex	-	ISO	Component
GO:0042162	telomeric DNA binding	-	ISO	Function
GO:0044530	supraspliceosomal complex	-	ISO	Component
GO:0044770	cell cycle phase transition	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0061014	positive regulation of mRNA catabolic process	-	ISO	Process
GO:0061158	3'-UTR-mediated mRNA destabilization	-	ISO	Process
GO:0071044	histone mRNA catabolic process	-	ISO	Process
GO:0071222	cellular response to lipopolysaccharide	-	ISO	Process
GO:0071347	cellular response to interleukin-1	-	ISO	Process