EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000058355 (Gene tree)
Gene ID: 24015
Gene Symbol: Abce1
Alias: Oabp|RNS4l (Eye)|Rnaseli
Full Name: ATP-binding cassette%2C sub-family E (OABP)%2C member 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 28279
Position: chr8: 79683462-79711740
Accession: 1195458
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000213842	-	589	-	-	- (aa)	-	-
ENSMUST00000080536	-	3793	-	ENSMUSP00000079379	599 (aa)	-	P61222
ENSMUST00000209354	-	814	-	-	- (aa)	-	-
ENSMUST00000211509	-	3030	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000058355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000058355's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000058355	Abce1	99	77.258	FBgn0086706	pix	98	77.258	Drosophila_melanogaster
ENSMUSG00000058355	Abce1	100	100.000	ENSG00000164163	ABCE1	100	100.000	Homo_sapiens
ENSMUSG00000058355	Abce1	100	68.595	YDR091C		99	68.595	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000054	ribosomal subunit export from nucleus	21873635.	IBA	Process
GO:0000166	nucleotide binding	-	IEA	Function
GO:0005506	iron ion binding	21873635.	IBA	Function
GO:0005524	ATP binding	21873635.	IBA	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006413	translational initiation	21873635.	IBA	Process
GO:0006415	translational termination	21873635.	IBA	Process
GO:0016887	ATPase activity	-	IEA	Function
GO:0043024	ribosomal small subunit binding	21873635.	IBA	Function
GO:0060698	endoribonuclease inhibitor activity	-	ISO	Function
GO:0060702	negative regulation of endoribonuclease activity	-	ISO	Process