EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000058558 (Gene tree)
Gene ID: 100503670
Gene Symbol: Rpl5
Alias: U21RNA
Full Name: ribosomal protein L5
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 8504
Position: chr5: 107900502-107909005
Accession: 102854
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000151767	-	815	-	-	- (aa)	-	-
ENSMUST00000140659	-	1024	-	-	- (aa)	-	-
ENSMUST00000082223	-	2045	XM_006534684	ENSMUSP00000080854	297 (aa)	XP_006534747	P47962
ENSMUST00000129944	-	634	-	-	- (aa)	-	-
ENSMUST00000123183	-	854	-	-	- (aa)	-	-
ENSMUST00000153590	-	834	-	ENSMUSP00000123474	163 (aa)	-	D3YYV8

Gene Model

Click here to download ENSMUSG00000058558's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000058558's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000058558	Rpl5	100	59.509	WBGene00004416	rpl-5	99	57.679	Caenorhabditis_elegans
ENSMUSG00000058558	Rpl5	100	71.779	FBgn0064225	RpL5	97	67.931	Drosophila_melanogaster
ENSMUSG00000058558	Rpl5	100	98.773	ENSG00000122406	RPL5	100	98.462	Homo_sapiens
ENSMUSG00000058558	Rpl5	100	53.374	YPL131W	RPL5	99	49.147	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	21873635.	IBA	Process
GO:0000027	ribosomal large subunit assembly	-	ISO	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005515	protein binding	16648475.17936560.20832751.22789538.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006364	rRNA processing	-	ISO	Process
GO:0006412	translation	-	IEA	Process
GO:0008097	5S rRNA binding	21873635.	IBA	Function
GO:0008097	5S rRNA binding	-	ISO	Function
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0010922	positive regulation of phosphatase activity	-	ISO	Process
GO:0014069	postsynaptic density	-	ISO	Component
GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	-	ISO	Component
GO:0019843	rRNA binding	-	IEA	Function
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0022625	cytosolic large ribosomal subunit	-	ISO	Component
GO:0022626	cytosolic ribosome	-	ISO	Component
GO:0031625	ubiquitin protein ligase binding	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0042273	ribosomal large subunit biogenesis	-	ISO	Process
GO:0045202	synapse	16635246.	EXP	Component
GO:0045202	synapse	16635246.	IDA	Component
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:0050821	protein stabilization	-	ISO	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISO	Process
GO:1904667	negative regulation of ubiquitin protein ligase activity	-	ISO	Process
GO:1905017	positive regulation of isoleucine-tRNA ligase activity	-	ISO	Process
GO:1905020	positive regulation of methionine-tRNA ligase activity	-	ISO	Process
GO:1905023	positive regulation of threonine-tRNA ligase activity	-	ISO	Process
GO:1990904	ribonucleoprotein complex	18809582.	ISO	Component
GO:1990948	ubiquitin ligase inhibitor activity	-	ISO	Function
GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:2000435	negative regulation of protein neddylation	-	ISO	Process