EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000059070 (Gene tree)
Gene ID: 19899
Gene Symbol: Rpl18
Alias: L18|Rpl18a
Full Name: ribosomal protein L18
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 5380
Position: chr7: 45715457-45720836
Accession: 98003
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000209693	-	535	-	ENSMUSP00000148055	155 (aa)	-	A0A1B0GSS8
ENSMUST00000211425	-	834	-	-	- (aa)	-	-
ENSMUST00000211435	-	402	-	ENSMUSP00000147862	126 (aa)	-	A0A1B0GSA8
ENSMUST00000209556	-	282	-	ENSMUSP00000147770	80 (aa)	-	A0A1B0GS28
ENSMUST00000209867	-	254	-	ENSMUSP00000147725	57 (aa)	-	A0A1B0GRZ3
ENSMUST00000072503	-	679	-	ENSMUSP00000072320	188 (aa)	-	P35980
ENSMUST00000211325	-	502	-	-	- (aa)	-	-
ENSMUST00000211061	-	552	-	ENSMUSP00000147257	159 (aa)	-	A0A1B0GQU8
ENSMUST00000209723	-	450	-	-	- (aa)	-	-
ENSMUST00000210640	-	2989	-	ENSMUSP00000147816	188 (aa)	-	P35980
ENSMUST00000209287	-	1027	XM_017322049	ENSMUSP00000147918	136 (aa)	XP_017177538	A0A1B0GSF7

Gene Model

Click here to download ENSMUSG00000059070's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000059070's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000059070	Rpl18	100	66.912	WBGene00004430	rpl-18	100	65.957	Caenorhabditis_elegans
ENSMUSG00000059070	Rpl18	95	87.597	ENSDARG00000029533	rpl18	100	84.756	Danio_rerio
ENSMUSG00000059070	Rpl18	99	70.588	FBgn0035753	RpL18	93	69.714	Drosophila_melanogaster
ENSMUSG00000059070	Rpl18	100	96.277	ENSG00000063177	RPL18	100	96.277	Homo_sapiens
ENSMUSG00000059070	Rpl18	99	58.599	YOL120C	RPL18A	93	55.114	Saccharomyces_cerevisiae
ENSMUSG00000059070	Rpl18	99	58.599	YNL301C	RPL18B	93	55.114	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002181	cytoplasmic translation	-	ISO	Process
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0022625	cytosolic large ribosomal subunit	-	ISO	Component
GO:0042788	polysomal ribosome	-	ISO	Component
GO:0045202	synapse	-	ISO	Component