EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000059273 (Gene tree)
Gene ID: 330474
Gene Symbol: Zc3h4
Alias: Bwq1|Kiaa1064-hp|LOC330474
Full Name: zinc finger CCCH-type containing 4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 36787 bases
Position: chr7:16400910-16437696
Accession: 2682314
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000147665	zf-CCCH	PF00642.24	7.2e-13	1	1
ENSMUSP00000096386	zf-CCCH	PF00642.24	8.9e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000209289	-	5853	XM_006540104	ENSMUSP00000147665	1180 (aa)	XP_006540167	A0A1B0GRU3
ENSMUST00000209374	-	3244	-	-	- (aa)	-	-
ENSMUST00000098789	-	6039	XM_006540102	ENSMUSP00000096386	1255 (aa)	XP_006540165	E9Q8K8
ENSMUST00000214735	-	333	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000059273's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000059273's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000059273	Zc3h4	91	33.428	ENSMUSG00000042851	Zc3h6	64	49.770

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000059273	Zc3h4	98	89.014	ENSG00000130749	ZC3H4	93	90.808	Homo_sapiens
ENSMUSG00000059273	Zc3h4	97	68.657	ENSACAG00000003986	ZC3H4	70	64.050	Anolis_carolinensis
ENSMUSG00000059273	Zc3h4	98	85.256	ENSANAG00000023963	ZC3H4	95	86.619	Aotus_nancymaae
ENSMUSG00000059273	Zc3h4	73	49.853	ENSAMXG00000009037	zc3h4	58	55.497	Astyanax_mexicanus
ENSMUSG00000059273	Zc3h4	98	87.350	ENSBTAG00000009286	ZC3H4	95	85.931	Bos_taurus
ENSMUSG00000059273	Zc3h4	98	87.801	ENSCJAG00000011601	ZC3H4	95	87.099	Callithrix_jacchus
ENSMUSG00000059273	Zc3h4	98	84.813	ENSCAFG00000004182	ZC3H4	95	84.223	Canis_familiaris
ENSMUSG00000059273	Zc3h4	98	82.609	ENSCHIG00000013956	ZC3H4	95	84.240	Capra_hircus
ENSMUSG00000059273	Zc3h4	89	88.148	ENSTSYG00000000926	ZC3H4	94	88.757	Carlito_syrichta
ENSMUSG00000059273	Zc3h4	98	86.848	ENSCCAG00000037597	ZC3H4	96	87.910	Cebus_capucinus
ENSMUSG00000059273	Zc3h4	98	87.089	ENSCATG00000039046	ZC3H4	95	86.367	Cercocebus_atys
ENSMUSG00000059273	Zc3h4	94	86.842	ENSCLAG00000001032	ZC3H4	100	86.311	Chinchilla_lanigera
ENSMUSG00000059273	Zc3h4	98	87.570	ENSCSAG00000002989	ZC3H4	98	87.089	Chlorocebus_sabaeus
ENSMUSG00000059273	Zc3h4	70	79.104	ENSCPBG00000001719	ZC3H4	77	79.521	Chrysemys_picta_bellii
ENSMUSG00000059273	Zc3h4	85	97.467	ENSCGRG00001016116	Zc3h4	100	97.467	Cricetulus_griseus_chok1gshd
ENSMUSG00000059273	Zc3h4	98	83.253	ENSDNOG00000003764	ZC3H4	95	84.295	Dasypus_novemcinctus
ENSMUSG00000059273	Zc3h4	100	83.320	ENSDORG00000002726	Zc3h4	100	85.455	Dipodomys_ordii
ENSMUSG00000059273	Zc3h4	81	97.802	ENSETEG00000005763	ZC3H4	74	97.826	Echinops_telfairi
ENSMUSG00000059273	Zc3h4	98	87.120	ENSECAG00000024342	ZC3H4	99	86.240	Equus_caballus
ENSMUSG00000059273	Zc3h4	79	84.874	ENSEEUG00000000519	ZC3H4	67	85.593	Erinaceus_europaeus
ENSMUSG00000059273	Zc3h4	100	86.242	ENSFCAG00000004835	ZC3H4	95	86.811	Felis_catus
ENSMUSG00000059273	Zc3h4	98	69.603	ENSGAGG00000019319	ZC3H4	60	66.534	Gopherus_agassizii
ENSMUSG00000059273	Zc3h4	98	89.094	ENSGGOG00000013071	ZC3H4	95	87.169	Gorilla_gorilla
ENSMUSG00000059273	Zc3h4	94	92.791	ENSSTOG00000016249	ZC3H4	99	92.791	Ictidomys_tridecemlineatus
ENSMUSG00000059273	Zc3h4	100	89.968	ENSJJAG00000019068	Zc3h4	100	90.047	Jaculus_jaculus
ENSMUSG00000059273	Zc3h4	98	85.292	ENSLAFG00000001586	ZC3H4	95	84.652	Loxodonta_africana
ENSMUSG00000059273	Zc3h4	98	88.933	ENSMFAG00000041518	ZC3H4	95	87.169	Macaca_fascicularis
ENSMUSG00000059273	Zc3h4	98	87.731	ENSMLEG00000007946	ZC3H4	99	87.009	Mandrillus_leucophaeus
ENSMUSG00000059273	Zc3h4	100	97.131	ENSMAUG00000000068	Zc3h4	100	97.131	Mesocricetus_auratus
ENSMUSG00000059273	Zc3h4	98	88.400	ENSMICG00000008786	ZC3H4	95	88.880	Microcebus_murinus
ENSMUSG00000059273	Zc3h4	91	79.082	ENSMODG00000008978	ZC3H4	90	84.180	Monodelphis_domestica
ENSMUSG00000059273	Zc3h4	100	98.167	MGP_PahariEiJ_G0021089	Zc3h4	100	98.167	Mus_pahari
ENSMUSG00000059273	Zc3h4	100	99.285	MGP_SPRETEiJ_G0030312	Zc3h4	100	99.285	Mus_spretus
ENSMUSG00000059273	Zc3h4	95	89.569	ENSMPUG00000005065	ZC3H4	95	87.982	Mustela_putorius_furo
ENSMUSG00000059273	Zc3h4	100	91.990	ENSNGAG00000020090	Zc3h4	100	90.960	Nannospalax_galili
ENSMUSG00000059273	Zc3h4	81	76.269	ENSMEUG00000009167	ZC3H4	73	84.081	Notamacropus_eugenii
ENSMUSG00000059273	Zc3h4	93	89.530	ENSOPRG00000014889	ZC3H4	88	89.378	Ochotona_princeps
ENSMUSG00000059273	Zc3h4	100	86.231	ENSODEG00000008320	ZC3H4	100	86.231	Octodon_degus
ENSMUSG00000059273	Zc3h4	79	63.927	ENSOANG00000001794	ZC3H4	53	69.912	Ornithorhynchus_anatinus
ENSMUSG00000059273	Zc3h4	97	84.813	ENSOCUG00000026069	ZC3H4	58	91.623	Oryctolagus_cuniculus
ENSMUSG00000059273	Zc3h4	98	87.840	ENSOGAG00000031123	ZC3H4	89	86.417	Otolemur_garnettii
ENSMUSG00000059273	Zc3h4	98	84.147	ENSPPRG00000023272	ZC3H4	95	85.052	Panthera_pardus
ENSMUSG00000059273	Zc3h4	83	93.846	ENSPTIG00000014229	ZC3H4	93	93.846	Panthera_tigris_altaica
ENSMUSG00000059273	Zc3h4	98	89.014	ENSPTRG00000011201	ZC3H4	95	87.089	Pan_troglodytes
ENSMUSG00000059273	Zc3h4	98	89.254	ENSPANG00000021115	ZC3H4	95	87.330	Papio_anubis
ENSMUSG00000059273	Zc3h4	97	71.408	ENSPSIG00000002241	ZC3H4	68	79.019	Pelodiscus_sinensis
ENSMUSG00000059273	Zc3h4	100	97.450	ENSPEMG00000009762	Zc3h4	100	97.450	Peromyscus_maniculatus_bairdii
ENSMUSG00000059273	Zc3h4	92	88.732	ENSPPYG00000010167	ZC3H4	94	87.266	Pongo_abelii
ENSMUSG00000059273	Zc3h4	73	81.034	ENSPCAG00000014919	ZC3H4	93	82.543	Procavia_capensis
ENSMUSG00000059273	Zc3h4	98	86.960	ENSPCOG00000017169	ZC3H4	95	86.720	Propithecus_coquereli
ENSMUSG00000059273	Zc3h4	93	87.789	ENSPVAG00000005687	ZC3H4	89	84.701	Pteropus_vampyrus
ENSMUSG00000059273	Zc3h4	99	97.260	ENSRNOG00000015229	Zc3h4	99	97.260	Rattus_norvegicus
ENSMUSG00000059273	Zc3h4	92	86.358	ENSRBIG00000027984	ZC3H4	95	80.433	Rhinopithecus_bieti
ENSMUSG00000059273	Zc3h4	98	87.731	ENSRROG00000032920	ZC3H4	95	86.047	Rhinopithecus_roxellana
ENSMUSG00000059273	Zc3h4	92	88.592	ENSSBOG00000030914	ZC3H4	99	89.320	Saimiri_boliviensis_boliviensis
ENSMUSG00000059273	Zc3h4	84	85.443	ENSSARG00000014146	ZC3H4	82	87.407	Sorex_araneus
ENSMUSG00000059273	Zc3h4	84	84.163	ENSSSCG00000003110	ZC3H4	84	82.604	Sus_scrofa
ENSMUSG00000059273	Zc3h4	100	85.430	ENSVVUG00000000208	ZC3H4	98	85.182	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function