EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000060244 (Gene tree)
Gene ID: 56009
Gene Symbol: Alyref2
Alias: C130042O11Rik|Refbp2
Full Name: Aly/REF export factor 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 1273 bases
Position: chr1:171503478-171504750
Accession: 1913144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000080242	RRM_1	PF00076.22	5.2e-11	1	1
ENSMUSP00000080242	FYTT	PF07078.11	0.00011	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000081527	-	1273	-	ENSMUSP00000080242	218 (aa)	-	G3X9I4

Gene Model

Click here to download ENSMUSG00000060244's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03040	Spliceosome	KEGG
mmu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000060244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000097427	Gm6763	98	69.930
ENSMUSG00000060244	Alyref2	89	67.299	ENSMUSG00000091101	Gm4302	61	70.225
ENSMUSG00000060244	Alyref2	89	66.825	ENSMUSG00000094314	Gm4301	62	69.101
ENSMUSG00000060244	Alyref2	100	62.264	ENSMUSG00000090854	Gm4340	100	55.849
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000097878	Gm8764	98	69.930
ENSMUSG00000060244	Alyref2	100	63.223	ENSMUSG00000117091	AC153137.1	100	60.166
ENSMUSG00000060244	Alyref2	89	67.143	ENSMUSG00000112931	Gm4303	62	70.225
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000095022	Gm20765	100	56.705
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000097550	Gm21304	100	56.705
ENSMUSG00000060244	Alyref2	89	67.143	ENSMUSG00000096744	Gm4307	62	70.225
ENSMUSG00000060244	Alyref2	89	67.143	ENSMUSG00000112856	Gm4305	62	70.225
ENSMUSG00000060244	Alyref2	100	64.050	ENSMUSG00000086727	4931428L18Rik	100	57.676
ENSMUSG00000060244	Alyref2	100	70.980	ENSMUSG00000025134	Alyref	100	77.344
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000094144	Gm21312	100	56.705
ENSMUSG00000060244	Alyref2	89	66.825	ENSMUSG00000096640	Gm4312	62	69.101
ENSMUSG00000060244	Alyref2	100	63.218	ENSMUSG00000091779	Gm21293	100	56.705

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000060244	Alyref2	100	72.481	ENSG00000183684	ALYREF	97	74.031	Homo_sapiens
ENSMUSG00000060244	Alyref2	100	60.440	ENSAPOG00000018455	ALYREF	100	62.271	Acanthochromis_polyacanthus
ENSMUSG00000060244	Alyref2	87	71.569	ENSAMEG00000017463	ALYREF	83	76.471	Ailuropoda_melanoleuca
ENSMUSG00000060244	Alyref2	87	75.510	ENSACAG00000010526	ALYREF	100	66.797	Anolis_carolinensis
ENSMUSG00000060244	Alyref2	88	80.000	ENSANAG00000022638	-	80	77.949	Aotus_nancymaae
ENSMUSG00000060244	Alyref2	100	74.312	ENSANAG00000028229	-	77	77.064	Aotus_nancymaae
ENSMUSG00000060244	Alyref2	100	70.039	ENSBTAG00000008498	ALYREF	100	71.595	Bos_taurus
ENSMUSG00000060244	Alyref2	100	70.930	ENSCJAG00000039942	ALYREF	97	73.256	Callithrix_jacchus
ENSMUSG00000060244	Alyref2	100	69.261	ENSCAFG00000005877	ALYREF	100	70.817	Canis_familiaris
ENSMUSG00000060244	Alyref2	100	74.888	ENSCAFG00020009815	ALYREF	100	78.027	Canis_lupus_dingo
ENSMUSG00000060244	Alyref2	98	87.671	ENSCHIG00000017396	ALYREF	91	89.498	Capra_hircus
ENSMUSG00000060244	Alyref2	91	80.905	ENSTSYG00000002272	ALYREF	84	80.905	Carlito_syrichta
ENSMUSG00000060244	Alyref2	58	72.180	ENSCAPG00000014727	-	100	79.851	Cavia_aperea
ENSMUSG00000060244	Alyref2	100	88.341	ENSCPOG00000013710	ALYREF	100	88.789	Cavia_porcellus
ENSMUSG00000060244	Alyref2	100	73.643	ENSCCAG00000020578	-	97	74.031	Cebus_capucinus
ENSMUSG00000060244	Alyref2	100	82.110	ENSCCAG00000030237	-	100	80.275	Cebus_capucinus
ENSMUSG00000060244	Alyref2	100	72.093	ENSCATG00000033169	ALYREF	97	73.643	Cercocebus_atys
ENSMUSG00000060244	Alyref2	100	81.651	ENSCLAG00000015026	ALYREF	100	84.475	Chinchilla_lanigera
ENSMUSG00000060244	Alyref2	100	72.093	ENSCSAG00000002216	ALYREF	97	73.643	Chlorocebus_sabaeus
ENSMUSG00000060244	Alyref2	82	83.243	ENSCANG00000034056	ALYREF	98	81.081	Colobus_angolensis_palliatus
ENSMUSG00000060244	Alyref2	100	84.375	ENSCGRG00001018191	-	100	85.268	Cricetulus_griseus_chok1gshd
ENSMUSG00000060244	Alyref2	83	78.836	ENSCGRG00000015871	-	100	75.124	Cricetulus_griseus_crigri
ENSMUSG00000060244	Alyref2	72	54.696	ENSCSEG00000015438	-	98	55.801	Cynoglossus_semilaevis
ENSMUSG00000060244	Alyref2	78	76.966	ENSDNOG00000002563	ALYREF	95	70.222	Dasypus_novemcinctus
ENSMUSG00000060244	Alyref2	78	82.778	ENSDORG00000025849	-	73	81.564	Dipodomys_ordii
ENSMUSG00000060244	Alyref2	78	81.250	ENSETEG00000016596	ALYREF	100	81.818	Echinops_telfairi
ENSMUSG00000060244	Alyref2	98	77.626	ENSEASG00005005824	ALYREF	90	79.452	Equus_asinus_asinus
ENSMUSG00000060244	Alyref2	98	77.626	ENSECAG00000018754	ALYREF	90	79.452	Equus_caballus
ENSMUSG00000060244	Alyref2	65	74.269	ENSEEUG00000010164	ALYREF	100	76.608	Erinaceus_europaeus
ENSMUSG00000060244	Alyref2	100	70.039	ENSFCAG00000022549	ALYREF	98	71.595	Felis_catus
ENSMUSG00000060244	Alyref2	88	83.246	ENSFDAG00000001213	ALYREF	91	84.293	Fukomys_damarensis
ENSMUSG00000060244	Alyref2	100	69.020	ENSGALG00000007237	ALYREF	100	70.980	Gallus_gallus
ENSMUSG00000060244	Alyref2	100	61.923	ENSGACG00000013328	ALYREF	100	63.077	Gasterosteus_aculeatus
ENSMUSG00000060244	Alyref2	100	67.829	ENSGAGG00000008536	ALYREF	100	70.543	Gopherus_agassizii
ENSMUSG00000060244	Alyref2	100	72.481	ENSGGOG00000013935	ALYREF	99	73.745	Gorilla_gorilla
ENSMUSG00000060244	Alyref2	100	84.163	ENSHGLG00000008293	ALYREF	100	87.387	Heterocephalus_glaber_female
ENSMUSG00000060244	Alyref2	93	66.222	ENSHGLG00100006949	ALYREF	94	67.111	Heterocephalus_glaber_male
ENSMUSG00000060244	Alyref2	100	62.687	ENSHCOG00000015046	ALYREF	100	63.296	Hippocampus_comes
ENSMUSG00000060244	Alyref2	100	74.609	ENSJJAG00000004134	-	100	75.781	Jaculus_jaculus
ENSMUSG00000060244	Alyref2	100	64.479	ENSLACG00000005694	ALYREF	100	67.692	Latimeria_chalumnae
ENSMUSG00000060244	Alyref2	83	79.144	ENSLAFG00000003083	ALYREF	100	82.888	Loxodonta_africana
ENSMUSG00000060244	Alyref2	100	71.315	ENSMFAG00000001394	ALYREF	97	73.413	Macaca_fascicularis
ENSMUSG00000060244	Alyref2	100	72.093	ENSMMUG00000012884	ALYREF	97	73.643	Macaca_mulatta
ENSMUSG00000060244	Alyref2	100	72.093	ENSMNEG00000043666	ALYREF	97	73.643	Macaca_nemestrina
ENSMUSG00000060244	Alyref2	86	82.447	ENSMLEG00000043353	ALYREF	87	81.868	Mandrillus_leucophaeus
ENSMUSG00000060244	Alyref2	100	81.651	ENSMAUG00000020552	-	100	81.651	Mesocricetus_auratus
ENSMUSG00000060244	Alyref2	100	72.374	ENSMICG00000017403	ALYREF	97	73.930	Microcebus_murinus
ENSMUSG00000060244	Alyref2	100	83.028	ENSMOCG00000016792	-	100	85.321	Microtus_ochrogaster
ENSMUSG00000060244	Alyref2	99	68.872	ENSMODG00000003030	ALYREF	84	75.194	Monodelphis_domestica
ENSMUSG00000060244	Alyref2	100	60.886	ENSMALG00000019408	ALYREF	100	61.111	Monopterus_albus
ENSMUSG00000060244	Alyref2	100	70.980	MGP_CAROLIEiJ_G0017529	Alyref	100	77.344	Mus_caroli
ENSMUSG00000060244	Alyref2	100	95.516	MGP_CAROLIEiJ_G0014874	Alyref2	100	95.516	Mus_caroli
ENSMUSG00000060244	Alyref2	72	77.128	MGP_PahariEiJ_G0018656	-	99	78.191	Mus_pahari
ENSMUSG00000060244	Alyref2	100	70.980	MGP_PahariEiJ_G0018655	-	100	77.344	Mus_pahari
ENSMUSG00000060244	Alyref2	83	71.277	MGP_PahariEiJ_G0027254	-	81	71.348	Mus_pahari
ENSMUSG00000060244	Alyref2	83	71.277	MGP_PahariEiJ_G0027255	-	79	71.348	Mus_pahari
ENSMUSG00000060244	Alyref2	78	53.982	MGP_SPRETEiJ_G0016590	-	54	71.311	Mus_spretus
ENSMUSG00000060244	Alyref2	100	98.624	MGP_SPRETEiJ_G0015679	Alyref2	100	98.624	Mus_spretus
ENSMUSG00000060244	Alyref2	100	70.980	MGP_SPRETEiJ_G0018373	Alyref	100	77.344	Mus_spretus
ENSMUSG00000060244	Alyref2	99	60.593	ENSMLUG00000027352	-	79	59.483	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	61.017	ENSMLUG00000030407	-	78	59.574	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	66.949	ENSMLUG00000027516	-	80	64.681	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	57.627	ENSMLUG00000022869	-	82	56.170	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	53.306	ENSMLUG00000024471	-	82	54.772	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	61.373	ENSMLUG00000024976	-	80	59.914	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	100	43.704	ENSMLUG00000023213	-	67	51.977	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	60.435	ENSMLUG00000024447	-	77	59.825	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	98	52.941	ENSMLUG00000015043	-	98	55.274	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	88	56.098	ENSMLUG00000028343	-	97	53.431	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	61.966	ENSMLUG00000026271	-	80	59.914	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	52.852	ENSMLUG00000002626	-	99	53.333	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	83	75.269	ENSMLUG00000009555	-	68	79.032	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	99	62.712	ENSMLUG00000025677	-	78	57.872	Myotis_lucifugus
ENSMUSG00000060244	Alyref2	100	72.481	ENSNLEG00000010313	ALYREF	97	74.031	Nomascus_leucogenys
ENSMUSG00000060244	Alyref2	90	56.190	ENSMEUG00000002210	ALYREF	92	60.849	Notamacropus_eugenii
ENSMUSG00000060244	Alyref2	58	72.932	ENSOPRG00000005551	-	52	78.195	Ochotona_princeps
ENSMUSG00000060244	Alyref2	100	68.077	ENSODEG00000008359	ALYREF	100	73.563	Octodon_degus
ENSMUSG00000060244	Alyref2	100	62.454	ENSORLG00000012331	ALYREF	99	62.353	Oryzias_latipes
ENSMUSG00000060244	Alyref2	78	82.123	ENSOGAG00000012409	ALYREF	85	79.293	Otolemur_garnettii
ENSMUSG00000060244	Alyref2	78	78.090	ENSOARG00000017932	ALYREF	83	68.778	Ovis_aries
ENSMUSG00000060244	Alyref2	100	70.039	ENSPPRG00000010829	ALYREF	98	71.595	Panthera_pardus
ENSMUSG00000060244	Alyref2	56	91.803	ENSPTIG00000006399	ALYREF	68	91.803	Panthera_tigris_altaica
ENSMUSG00000060244	Alyref2	100	72.481	ENSPTRG00000009774	ALYREF	97	74.031	Pan_troglodytes
ENSMUSG00000060244	Alyref2	100	72.093	ENSPANG00000019265	ALYREF	97	73.643	Papio_anubis
ENSMUSG00000060244	Alyref2	56	72.727	ENSPSIG00000017541	ALYREF	97	76.515	Pelodiscus_sinensis
ENSMUSG00000060244	Alyref2	100	72.093	ENSPPYG00000008749	ALYREF	97	74.031	Pongo_abelii
ENSMUSG00000060244	Alyref2	100	72.374	ENSPCOG00000020874	ALYREF	97	73.930	Propithecus_coquereli
ENSMUSG00000060244	Alyref2	100	62.992	ENSPVAG00000017866	ALYREF	100	66.016	Pteropus_vampyrus
ENSMUSG00000060244	Alyref2	65	73.988	ENSRNOG00000036687	Alyref	91	76.744	Rattus_norvegicus
ENSMUSG00000060244	Alyref2	79	79.121	ENSRBIG00000039651	ALYREF	74	81.319	Rhinopithecus_bieti
ENSMUSG00000060244	Alyref2	89	78.744	ENSRROG00000045364	ALYREF	81	80.193	Rhinopithecus_roxellana
ENSMUSG00000060244	Alyref2	83	74.211	ENSSHAG00000010459	ALYREF	98	81.675	Sarcophilus_harrisii
ENSMUSG00000060244	Alyref2	100	51.321	ENSSDUG00000003992	-	98	50.965	Seriola_dumerili
ENSMUSG00000060244	Alyref2	100	51.527	ENSSLDG00000005386	-	98	51.562	Seriola_lalandi_dorsalis
ENSMUSG00000060244	Alyref2	100	67.829	ENSSPUG00000004600	ALYREF	100	69.380	Sphenodon_punctatus
ENSMUSG00000060244	Alyref2	100	58.759	ENSSPAG00000011178	ALYREF	97	60.949	Stegastes_partitus
ENSMUSG00000060244	Alyref2	100	70.703	ENSSSCG00000032655	ALYREF	100	71.484	Sus_scrofa
ENSMUSG00000060244	Alyref2	56	73.282	ENSTGUG00000003513	ALYREF	97	74.046	Taeniopygia_guttata
ENSMUSG00000060244	Alyref2	100	62.547	ENSTRUG00000008828	ALYREF	100	61.567	Takifugu_rubripes
ENSMUSG00000060244	Alyref2	78	76.966	ENSTBEG00000005834	ALYREF	100	78.652	Tupaia_belangeri
ENSMUSG00000060244	Alyref2	100	69.261	ENSTTRG00000012275	ALYREF	100	70.817	Tursiops_truncatus
ENSMUSG00000060244	Alyref2	77	67.429	ENSUAMG00000016931	ALYREF	65	68.452	Ursus_americanus
ENSMUSG00000060244	Alyref2	77	67.429	ENSUMAG00000016384	ALYREF	65	69.048	Ursus_maritimus
ENSMUSG00000060244	Alyref2	100	71.308	ENSXETG00000005391	alyref	100	71.308	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	10786854.	IDA	Function
GO:0003723	RNA binding	10786854.	IDA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0051028	mRNA transport	18364396.	IDA	Process