EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000172953	-	630	-	-	- (aa)	-	-
ENSMUST00000174354	-	4084	-	ENSMUSP00000134440	979 (aa)	-	Q9ESZ8
ENSMUST00000174867	-	704	-	ENSMUSP00000133435	169 (aa)	-	G3UWV2
ENSMUST00000174003	-	771	-	-	- (aa)	-	-
ENSMUST00000173263	-	738	-	ENSMUSP00000133905	79 (aa)	-	G3UY14
ENSMUST00000173485	-	833	-	ENSMUSP00000133526	167 (aa)	-	G3UX27
ENSMUST00000059042	-	4455	XM_006504384	ENSMUSP00000049625	998 (aa)	XP_006504447	Q9ESZ8
ENSMUST00000173887	-	380	-	-	- (aa)	-	-
ENSMUST00000174188	-	733	-	ENSMUSP00000134636	159 (aa)	-	G3UZU4
ENSMUST00000173888	-	2820	-	ENSMUSP00000133969	939 (aa)	-	Q9ESZ8
ENSMUST00000174182	-	758	-	-	- (aa)	-	-
ENSMUST00000082057	-	4375	XM_006504391	ENSMUSP00000080714	977 (aa)	XP_006504454	Q9ESZ8
ENSMUST00000172553	-	490	-	-	- (aa)	-	-
ENSMUST00000172600	-	358	-	-	- (aa)	-	-
ENSMUST00000173651	-	818	-	ENSMUSP00000133375	86 (aa)	-	G3UWP6
ENSMUST00000172904	-	3274	-	-	- (aa)	-	-
ENSMUST00000174133	-	1310	-	ENSMUSP00000134111	437 (aa)	-	G3UYJ6
ENSMUST00000174773	-	517	-	-	- (aa)	-	-
ENSMUST00000201371	-	1329	-	-	- (aa)	-	-
ENSMUST00000174513	-	4021	XM_017320681	ENSMUSP00000133489	958 (aa)	XP_017176170	Q9ESZ8
ENSMUST00000174772	-	4078	-	ENSMUSP00000133740	977 (aa)	-	Q9ESZ8
ENSMUST00000111261	-	4381	XM_017320674	ENSMUSP00000106892	979 (aa)	XP_017176163	Q9ESZ8
ENSMUST00000172715	-	4114	-	ENSMUSP00000134035	913 (aa)	-	G3UYD0
ENSMUST00000173341	-	4302	-	ENSMUSP00000133444	962 (aa)	-	Q3UHU8
ENSMUST00000173509	-	803	-	-	- (aa)	-	-
ENSMUST00000202343	-	2164	-	-	- (aa)	-	-
ENSMUST00000173504	-	950	-	ENSMUSP00000134042	150 (aa)	-	G3UYD7
ENSMUST00000174155	-	4141	-	ENSMUSP00000133566	998 (aa)	-	Q9ESZ8

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu03022	Basal transcription factors	KEGG
mmu04022	cGMP-PKG signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000060261	Gtf2i	100	98.113	ENSG00000263001	GTF2I	100	97.344	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	-	IEA	Function
GO:0005515	protein binding	22899722.	IPI	Function
GO:0005623	cell	-	ISO	Component
GO:0005634	nucleus	14751286.17052463.22899722.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006366	transcription by RNA polymerase II	-	IEA	Process
GO:0014886	transition between slow and fast fiber	22899722.	IDA	Process
GO:0016525	negative regulation of angiogenesis	-	ISO	Process
GO:0042995	cell projection	14751286.	IDA	Component
GO:0043025	neuronal cell body	14751286.	IDA	Component
GO:0051019	mitogen-activated protein kinase binding	17052463.	IDA	Function
GO:0051481	negative regulation of cytosolic calcium ion concentration	-	ISO	Process