EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000207814	-	809	-	ENSMUSP00000146338	57 (aa)	-	A0A140LHA6
ENSMUST00000208472	-	950	-	ENSMUSP00000146814	317 (aa)	-	A0A140LIG7
ENSMUST00000209067	-	693	-	-	- (aa)	-	-
ENSMUST00000208405	-	542	-	ENSMUSP00000146398	38 (aa)	-	A0A140LHG0
ENSMUST00000207554	-	597	-	-	- (aa)	-	-
ENSMUST00000208813	-	342	-	-	- (aa)	-	-
ENSMUST00000166972	-	3449	XM_006540569	ENSMUSP00000127842	977 (aa)	XP_006540632	P17426
ENSMUST00000107857	-	3301	-	ENSMUSP00000103489	955 (aa)	-	P17426
ENSMUST00000208285	-	389	-	-	- (aa)	-	-
ENSMUST00000167930	-	3376	-	ENSMUSP00000127497	955 (aa)	-	P17426
ENSMUST00000085399	-	3442	-	ENSMUSP00000082519	977 (aa)	-	P17426

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04144	Endocytosis	KEGG
mmu04721	Synaptic vesicle cycle	KEGG
mmu04961	Endocrine and other factor-regulated calcium reabsorption	KEGG
mmu05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000060279	Ap2a1	100	98.364	ENSG00000196961	AP2A1	100	98.364	Homo_sapiens
ENSMUSG00000060279	Ap2a1	100	81.648	ENSMUSG00000002957	Ap2a2	95	96.000	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	14555962.16710293.17626015.29262337.	IPI	Function
GO:0005886	plasma membrane	-	IEA	Component
GO:0005905	clathrin-coated pit	-	IEA	Component
GO:0006886	intracellular protein transport	9714600.	TAS	Process
GO:0006897	endocytosis	-	IEA	Process
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0010976	positive regulation of neuron projection development	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	9714600.	TAS	Process
GO:0016323	basolateral plasma membrane	-	ISO	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0019901	protein kinase binding	21307259.	IPI	Function
GO:0030117	membrane coat	11879655.	IDA	Component
GO:0030122	AP-2 adaptor complex	-	IEA	Component
GO:0030131	clathrin adaptor complex	-	IEA	Component
GO:0030136	clathrin-coated vesicle	-	ISO	Component
GO:0030141	secretory granule	9714600.	TAS	Component
GO:0032433	filopodium tip	24305805.	IDA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035615	clathrin adaptor activity	-	IEA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0048260	positive regulation of receptor-mediated endocytosis	-	ISO	Process
GO:0050750	low-density lipoprotein particle receptor binding	-	ISO	Function
GO:0072583	clathrin-dependent endocytosis	-	IEA	Process
GO:1900126	negative regulation of hyaluronan biosynthetic process	-	ISO	Process