EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000061024 (Gene tree)
Gene ID: 59014
Gene Symbol: Rrs1
Alias: 5730466A07Rik|D1Ertd701e
Full Name: ribosome biogenesis regulator 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 2048 bases
Position: chr1:9545408-9547455
Accession: 1929721
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000071955	RRS1	PF04939.12	4.5e-57	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000072079	-	2048	-	ENSMUSP00000071955	365 (aa)	-	Q9CYH6

Gene Model

Click here to download ENSMUSG00000061024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000061024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000061024	Rrs1	100	90.685	ENSG00000179041	RRS1	100	90.685	Homo_sapiens
ENSMUSG00000061024	Rrs1	87	67.296	ENSATEG00000011743	rrs1	97	64.655	Anabas_testudineus
ENSMUSG00000061024	Rrs1	100	89.589	ENSANAG00000018116	RRS1	100	89.589	Aotus_nancymaae
ENSMUSG00000061024	Rrs1	84	65.902	ENSAMXG00000037893	rrs1	91	60.606	Astyanax_mexicanus
ENSMUSG00000061024	Rrs1	100	88.767	ENSBTAG00000016716	RRS1	100	88.767	Bos_taurus
ENSMUSG00000061024	Rrs1	70	44.528	WBGene00007617	rrbs-1	78	44.528	Caenorhabditis_elegans
ENSMUSG00000061024	Rrs1	100	89.589	ENSCJAG00000022034	RRS1	100	89.589	Callithrix_jacchus
ENSMUSG00000061024	Rrs1	100	88.493	ENSCAFG00000007313	RRS1	100	88.493	Canis_familiaris
ENSMUSG00000061024	Rrs1	100	88.493	ENSCAFG00020016049	-	100	88.493	Canis_lupus_dingo
ENSMUSG00000061024	Rrs1	100	88.493	ENSCAFG00020020365	-	100	88.493	Canis_lupus_dingo
ENSMUSG00000061024	Rrs1	100	89.315	ENSCHIG00000009141	RRS1	100	89.315	Capra_hircus
ENSMUSG00000061024	Rrs1	96	88.252	ENSCPOG00000000647	RRS1	100	88.767	Cavia_porcellus
ENSMUSG00000061024	Rrs1	100	89.589	ENSCCAG00000032186	RRS1	100	89.589	Cebus_capucinus
ENSMUSG00000061024	Rrs1	100	90.959	ENSCATG00000016944	RRS1	100	90.959	Cercocebus_atys
ENSMUSG00000061024	Rrs1	100	90.959	ENSCSAG00000018552	RRS1	100	90.959	Chlorocebus_sabaeus
ENSMUSG00000061024	Rrs1	87	93.691	ENSCHOG00000002455	RRS1	100	90.685	Choloepus_hoffmanni
ENSMUSG00000061024	Rrs1	87	66.258	ENSCPBG00000021374	RRS1	96	65.192	Chrysemys_picta_bellii
ENSMUSG00000061024	Rrs1	87	48.607	ENSCING00000002177	-	99	48.607	Ciona_intestinalis
ENSMUSG00000061024	Rrs1	87	47.692	ENSCSAVG00000011819	-	99	47.692	Ciona_savignyi
ENSMUSG00000061024	Rrs1	100	90.137	ENSCANG00000012718	RRS1	100	90.137	Colobus_angolensis_palliatus
ENSMUSG00000061024	Rrs1	100	92.603	ENSCGRG00001002391	-	100	92.603	Cricetulus_griseus_chok1gshd
ENSMUSG00000061024	Rrs1	98	89.356	ENSCGRG00001015575	-	99	89.356	Cricetulus_griseus_chok1gshd
ENSMUSG00000061024	Rrs1	82	56.146	ENSCSEG00000014750	rrs1	97	54.416	Cynoglossus_semilaevis
ENSMUSG00000061024	Rrs1	84	57.329	ENSCVAG00000017878	rrs1	98	55.233	Cyprinodon_variegatus
ENSMUSG00000061024	Rrs1	82	66.333	ENSDARG00000003941	rrs1	97	63.988	Danio_rerio
ENSMUSG00000061024	Rrs1	100	88.767	ENSDNOG00000017900	RRS1	99	88.767	Dasypus_novemcinctus
ENSMUSG00000061024	Rrs1	61	92.308	ENSDORG00000026331	Rrs1	100	86.617	Dipodomys_ordii
ENSMUSG00000061024	Rrs1	79	45.763	FBgn0052409	CG32409	95	44.412	Drosophila_melanogaster
ENSMUSG00000061024	Rrs1	55	84.577	ENSETEG00000000935	-	55	84.577	Echinops_telfairi
ENSMUSG00000061024	Rrs1	80	56.122	ENSEBUG00000013506	rrs1	96	54.861	Eptatretus_burgeri
ENSMUSG00000061024	Rrs1	100	89.863	ENSEASG00005001691	RRS1	100	89.863	Equus_asinus_asinus
ENSMUSG00000061024	Rrs1	92	88.657	ENSECAG00000004492	RRS1	100	88.657	Equus_caballus
ENSMUSG00000061024	Rrs1	100	88.493	ENSEEUG00000013719	RRS1	100	88.493	Erinaceus_europaeus
ENSMUSG00000061024	Rrs1	100	89.863	ENSFCAG00000014332	RRS1	100	89.863	Felis_catus
ENSMUSG00000061024	Rrs1	80	64.570	ENSGALG00000030890	RRS1	100	61.003	Gallus_gallus
ENSMUSG00000061024	Rrs1	86	61.905	ENSGACG00000002969	rrs1	99	59.066	Gasterosteus_aculeatus
ENSMUSG00000061024	Rrs1	87	65.138	ENSGAGG00000023718	RRS1	98	63.231	Gopherus_agassizii
ENSMUSG00000061024	Rrs1	100	91.507	ENSGGOG00000026663	RRS1	100	91.507	Gorilla_gorilla
ENSMUSG00000061024	Rrs1	100	87.945	ENSHGLG00000021423	RRS1	100	87.945	Heterocephalus_glaber_female
ENSMUSG00000061024	Rrs1	100	87.945	ENSHGLG00100020640	RRS1	100	87.945	Heterocephalus_glaber_male
ENSMUSG00000061024	Rrs1	98	62.465	ENSHCOG00000015358	rrs1	94	63.025	Hippocampus_comes
ENSMUSG00000061024	Rrs1	82	65.772	ENSIPUG00000014412	rrs1	99	62.428	Ictalurus_punctatus
ENSMUSG00000061024	Rrs1	100	92.055	ENSSTOG00000026310	RRS1	100	92.055	Ictidomys_tridecemlineatus
ENSMUSG00000061024	Rrs1	76	82.437	ENSJJAG00000020395	-	100	71.585	Jaculus_jaculus
ENSMUSG00000061024	Rrs1	84	90.909	ENSJJAG00000011507	-	100	87.738	Jaculus_jaculus
ENSMUSG00000061024	Rrs1	82	67.110	ENSKMAG00000008238	rrs1	99	62.941	Kryptolebias_marmoratus
ENSMUSG00000061024	Rrs1	85	67.097	ENSLACG00000004058	RRS1	99	65.653	Latimeria_chalumnae
ENSMUSG00000061024	Rrs1	84	69.180	ENSLOCG00000017812	rrs1	98	66.269	Lepisosteus_oculatus
ENSMUSG00000061024	Rrs1	87	92.429	ENSLAFG00000015405	RRS1	99	88.767	Loxodonta_africana
ENSMUSG00000061024	Rrs1	100	90.411	ENSMFAG00000042747	RRS1	100	90.411	Macaca_fascicularis
ENSMUSG00000061024	Rrs1	100	90.411	ENSMMUG00000000886	RRS1	100	90.411	Macaca_mulatta
ENSMUSG00000061024	Rrs1	100	90.411	ENSMNEG00000011696	RRS1	100	90.411	Macaca_nemestrina
ENSMUSG00000061024	Rrs1	100	90.959	ENSMLEG00000004794	RRS1	100	90.959	Mandrillus_leucophaeus
ENSMUSG00000061024	Rrs1	82	67.774	ENSMZEG00005004349	RRS1	92	65.957	Maylandia_zebra
ENSMUSG00000061024	Rrs1	100	93.151	ENSMAUG00000005392	Rrs1	100	93.151	Mesocricetus_auratus
ENSMUSG00000061024	Rrs1	99	91.136	ENSMOCG00000015862	Rrs1	92	91.136	Microtus_ochrogaster
ENSMUSG00000061024	Rrs1	90	78.354	ENSMODG00000024952	RRS1	99	75.871	Monodelphis_domestica
ENSMUSG00000061024	Rrs1	100	98.356	MGP_CAROLIEiJ_G0013936	Rrs1	100	98.356	Mus_caroli
ENSMUSG00000061024	Rrs1	100	95.616	MGP_PahariEiJ_G0023883	Rrs1	100	95.616	Mus_pahari
ENSMUSG00000061024	Rrs1	100	99.452	MGP_SPRETEiJ_G0014739	Rrs1	100	99.452	Mus_spretus
ENSMUSG00000061024	Rrs1	100	87.945	ENSMPUG00000018626	RRS1	98	87.945	Mustela_putorius_furo
ENSMUSG00000061024	Rrs1	100	91.233	ENSNGAG00000012904	Rrs1	100	91.233	Nannospalax_galili
ENSMUSG00000061024	Rrs1	88	83.282	ENSNLEG00000027730	RRS1	96	89.116	Nomascus_leucogenys
ENSMUSG00000061024	Rrs1	82	68.439	ENSONIG00000014187	rrs1	95	66.163	Oreochromis_niloticus
ENSMUSG00000061024	Rrs1	90	72.205	ENSOANG00000012348	RRS1	98	69.892	Ornithorhynchus_anatinus
ENSMUSG00000061024	Rrs1	90	91.743	ENSOCUG00000013490	RRS1	100	86.992	Oryctolagus_cuniculus
ENSMUSG00000061024	Rrs1	86	57.143	ENSOMEG00000008525	rrs1	99	55.491	Oryzias_melastigma
ENSMUSG00000061024	Rrs1	100	89.041	ENSOGAG00000001085	RRS1	100	89.041	Otolemur_garnettii
ENSMUSG00000061024	Rrs1	100	83.562	ENSOARG00000017417	RRS1	98	83.562	Ovis_aries
ENSMUSG00000061024	Rrs1	100	90.959	ENSPPAG00000024378	RRS1	100	90.959	Pan_paniscus
ENSMUSG00000061024	Rrs1	100	89.589	ENSPPRG00000021408	RRS1	100	89.589	Panthera_pardus
ENSMUSG00000061024	Rrs1	100	90.685	ENSPTRG00000030988	RRS1	100	90.685	Pan_troglodytes
ENSMUSG00000061024	Rrs1	100	65.479	ENSPANG00000035974	RRS1	100	66.027	Papio_anubis
ENSMUSG00000061024	Rrs1	81	67.677	ENSPKIG00000007953	rrs1	98	63.988	Paramormyrops_kingsleyae
ENSMUSG00000061024	Rrs1	100	92.055	ENSPEMG00000014427	Rrs1	100	92.055	Peromyscus_maniculatus_bairdii
ENSMUSG00000061024	Rrs1	82	60.067	ENSPMAG00000006513	rrs1	97	54.865	Petromyzon_marinus
ENSMUSG00000061024	Rrs1	84	82.468	ENSPCIG00000026695	RRS1	100	77.717	Phascolarctos_cinereus
ENSMUSG00000061024	Rrs1	82	69.231	ENSPFOG00000020722	rrs1	100	67.077	Poecilia_formosa
ENSMUSG00000061024	Rrs1	83	58.361	ENSPREG00000019960	rrs1	96	56.433	Poecilia_reticulata
ENSMUSG00000061024	Rrs1	81	94.276	ENSPPYG00000018637	RRS1	100	94.276	Pongo_abelii
ENSMUSG00000061024	Rrs1	90	90.909	ENSPCAG00000009115	RRS1	100	88.493	Procavia_capensis
ENSMUSG00000061024	Rrs1	80	67.123	ENSPNAG00000021707	rrs1	97	63.663	Pygocentrus_nattereri
ENSMUSG00000061024	Rrs1	100	95.068	ENSRNOG00000007240	Rrs1	100	95.068	Rattus_norvegicus
ENSMUSG00000061024	Rrs1	100	90.137	ENSRBIG00000009132	RRS1	100	90.137	Rhinopithecus_bieti
ENSMUSG00000061024	Rrs1	100	90.137	ENSRROG00000013472	RRS1	100	90.137	Rhinopithecus_roxellana
ENSMUSG00000061024	Rrs1	92	86.782	ENSSBOG00000012639	-	100	86.575	Saimiri_boliviensis_boliviensis
ENSMUSG00000061024	Rrs1	92	90.145	ENSSBOG00000011006	-	100	86.575	Saimiri_boliviensis_boliviensis
ENSMUSG00000061024	Rrs1	80	55.631	ENSSFOG00015015772	rrs1	97	53.687	Scleropages_formosus
ENSMUSG00000061024	Rrs1	81	66.892	ENSSMAG00000015226	rrs1	98	61.905	Scophthalmus_maximus
ENSMUSG00000061024	Rrs1	82	85.393	ENSSARG00000006976	RRS1	82	85.393	Sorex_araneus
ENSMUSG00000061024	Rrs1	100	89.863	ENSSSCG00000006214	RRS1	100	89.863	Sus_scrofa
ENSMUSG00000061024	Rrs1	85	64.194	ENSTRUG00000008796	rrs1	94	64.331	Takifugu_rubripes
ENSMUSG00000061024	Rrs1	76	67.754	ENSTNIG00000004026	rrs1	99	65.689	Tetraodon_nigroviridis
ENSMUSG00000061024	Rrs1	100	89.589	ENSTBEG00000014752	RRS1	100	89.589	Tupaia_belangeri
ENSMUSG00000061024	Rrs1	100	89.589	ENSUAMG00000008502	RRS1	100	89.589	Ursus_americanus
ENSMUSG00000061024	Rrs1	100	88.767	ENSVVUG00000018452	RRS1	100	88.767	Vulpes_vulpes
ENSMUSG00000061024	Rrs1	82	68.896	ENSXCOG00000009809	rrs1	95	66.272	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000027	ribosomal large subunit assembly	-	ISO	Process
GO:0000055	ribosomal large subunit export from nucleus	21873635.	IBA	Process
GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0000794	condensed nuclear chromosome	-	ISO	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0002244	hematopoietic progenitor cell differentiation	24029230.	IMP	Process
GO:0005515	protein binding	19433866.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	19433866.	IDA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005783	endoplasmic reticulum	19433866.	IDA	Component
GO:0007080	mitotic metaphase plate congression	-	ISO	Process
GO:0008097	5S rRNA binding	-	ISO	Function
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	-	IEA	Process
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0042273	ribosomal large subunit biogenesis	-	ISO	Process
GO:1901796	regulation of signal transduction by p53 class mediator	-	ISO	Process
GO:1902570	protein localization to nucleolus	-	ISO	Process